Wall clock time and date at job start Tue Mar 31 2020 19:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99892 * 2 1 4 4 H 1.48504 * 109.47344 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47112 * 299.99866 * 3 2 1 6 6 H 1.48493 * 109.47351 * 60.00000 * 3 2 1 7 7 C 1.37874 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00221 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.43201 * 57.46334 * 9 7 2 11 11 C 1.54889 * 110.48983 * 294.78220 * 9 7 2 12 12 C 1.54885 * 102.74994 * 203.37868 * 11 9 7 13 13 C 1.54272 * 104.19904 * 37.94008 * 12 11 9 14 14 H 1.09002 * 110.07378 * 217.08907 * 13 12 11 15 15 N 1.46495 * 110.03372 * 95.67420 * 13 12 11 16 16 C 1.39058 * 120.00214 * 87.83573 * 15 13 12 17 17 C 1.39206 * 119.62665 * 359.97438 * 16 15 13 18 18 C 1.38393 * 119.30485 * 180.02562 * 17 16 15 19 19 C 1.38765 * 118.58732 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.39353 * 179.97438 * 19 18 17 21 21 C 1.39195 * 119.20964 * 359.97438 * 19 18 17 22 22 C 1.48403 * 119.68562 * 179.97438 * 21 19 18 23 23 N 1.34066 * 126.67811 * 359.97438 * 22 21 19 24 24 N 1.28990 * 107.26767 * 179.97438 * 23 22 21 25 25 N 1.28732 * 108.94839 * 359.97438 * 24 23 22 26 26 H 0.97001 * 125.33511 * 179.97438 * 25 24 23 27 27 N 1.28877 * 109.32161 * 0.24675 * 25 24 23 28 28 N 1.32257 * 119.63312 * 180.27520 * 16 15 13 29 29 C 1.53872 * 106.59428 * 336.39315 * 13 12 11 30 30 H 0.96994 * 120.00598 * 0.02562 * 1 2 3 31 31 H 1.09004 * 110.75321 * 321.69191 * 11 9 7 32 32 H 1.08997 * 110.75916 * 85.05895 * 11 9 7 33 33 H 1.08997 * 110.48512 * 279.26186 * 12 11 9 34 34 H 1.09000 * 110.48996 * 156.61646 * 12 11 9 35 35 H 0.97000 * 120.00159 * 267.83869 * 15 13 12 36 36 H 1.07999 * 120.34064 * 359.97438 * 17 16 15 37 37 H 1.08002 * 120.70260 * 179.97438 * 18 17 16 38 38 H 1.09000 * 110.03630 * 119.28578 * 29 13 12 39 39 H 1.09005 * 110.03245 * 240.71681 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5847 -2.5538 -0.8614 11 6 0.4538 -2.6649 1.3170 12 6 0.2759 -4.2002 1.4180 13 6 1.6126 -4.7709 0.9009 14 1 1.4340 -5.6793 0.3256 15 7 2.5050 -5.0575 2.0267 16 6 2.4486 -6.2934 2.6616 17 6 1.5408 -7.2524 2.2213 18 6 1.4899 -8.4800 2.8583 19 6 2.3513 -8.7127 3.9210 20 17 2.3268 -10.2355 4.7541 21 6 3.2351 -7.7106 4.3111 22 6 4.1605 -7.9480 5.4467 23 7 4.2559 -9.0650 6.1820 24 7 5.1760 -8.8655 7.0638 25 7 5.6538 -7.6802 6.9086 26 1 6.3577 -7.2843 7.4459 27 7 5.0462 -7.1001 5.9312 28 7 3.2539 -6.5424 3.6808 29 6 2.2326 -3.6893 -0.0010 30 1 -0.4851 0.8399 -0.0004 31 1 1.0249 -2.2856 2.1644 32 1 -0.5137 -2.1676 1.2483 33 1 -0.5494 -4.5309 0.7876 34 1 0.1093 -4.4977 2.4533 35 1 3.1353 -4.3851 2.3294 36 1 0.8825 -7.0403 1.3917 37 1 0.7940 -9.2403 2.5356 38 1 3.1975 -3.3776 0.3989 39 1 2.3541 -4.0725 -1.0142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592682429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:18 Heat of formation + Delta-G solvation = 156.380770 kcal Electronic energy + Delta-G solvation = -25232.377477 eV Core-core repulsion = 21431.759311 eV Total energy + Delta-G solvation = -3800.618166 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.100 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.59922 -40.44434 -38.02257 -36.47735 -34.83038 -34.27519 -33.50907 -32.49735 -31.89210 -29.50680 -28.29836 -26.88031 -25.43150 -24.75462 -23.92125 -22.72618 -22.11819 -19.75417 -19.37231 -19.23813 -17.64139 -17.30871 -17.08569 -16.56424 -16.14379 -15.47035 -14.82253 -14.66066 -14.49859 -14.21310 -14.00540 -13.40280 -13.14333 -12.68015 -12.66432 -12.36420 -12.24136 -11.76551 -11.55391 -11.46886 -11.42388 -11.09318 -11.00191 -10.89260 -10.72725 -10.57058 -10.42016 -10.13791 -9.87633 -9.73079 -9.63976 -9.45774 -9.30776 -8.87913 -8.42768 -7.57714 -6.07270 -4.10175 0.44009 1.03524 1.19067 2.04323 2.15213 2.17165 2.96735 3.25722 3.34557 3.37644 3.53253 3.71747 3.98570 4.39221 4.69576 4.78941 4.83742 5.00066 5.22177 5.23590 5.31115 5.44210 5.47551 5.61574 5.73313 5.76870 6.07164 6.17660 6.20552 6.30797 6.41182 6.54490 6.59849 6.83927 6.96805 7.17320 7.25086 7.61321 7.64674 7.78581 7.94623 7.97455 8.07436 8.36016 8.92454 9.54550 11.02185 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.018472 B = 0.002572 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.469410 B =10883.607066 C =12054.688728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.049 3.951 10 H 0.034 0.966 11 C -0.099 4.099 12 C -0.144 4.144 13 C 0.144 3.856 14 H 0.073 0.927 15 N -0.696 5.696 16 C 0.420 3.580 17 C -0.211 4.211 18 C -0.024 4.024 19 C -0.125 4.125 20 Cl -0.038 7.038 21 C 0.262 3.738 22 C 0.216 3.784 23 N -0.239 5.239 24 N -0.058 5.058 25 N -0.230 5.230 26 H 0.475 0.525 27 N -0.255 5.255 28 N -0.511 5.511 29 C -0.123 4.123 30 H 0.259 0.741 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.409 0.591 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.064 0.936 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.474 -18.115 9.252 21.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.030 3.970 10 H 0.052 0.948 11 C -0.137 4.137 12 C -0.183 4.183 13 C 0.040 3.960 14 H 0.091 0.909 15 N -0.325 5.325 16 C 0.181 3.819 17 C -0.238 4.238 18 C -0.050 4.050 19 C -0.161 4.161 20 Cl -0.010 7.010 21 C 0.120 3.880 22 C -0.065 4.065 23 N -0.113 5.113 24 N -0.053 5.053 25 N -0.076 5.076 26 H 0.330 0.670 27 N -0.107 5.107 28 N -0.230 5.230 29 C -0.161 4.161 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.246 0.754 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.083 0.917 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.026 -17.749 9.873 21.185 hybrid contribution 0.380 1.119 -0.024 1.182 sum 6.407 -16.630 9.849 20.362 Atomic orbital electron populations 1.69950 1.05870 1.26426 1.50424 1.24970 0.94835 0.99058 0.95029 0.86598 0.80189 0.84016 0.77568 1.19810 1.21068 1.21084 1.21195 0.92723 0.90452 1.50910 0.92646 1.19471 0.92384 0.91135 0.94011 0.94813 1.22448 1.01466 0.90172 0.99651 1.22986 0.95507 1.00117 0.99699 1.21967 0.89986 0.98393 0.85650 0.90873 1.45172 1.41398 1.11930 1.34013 1.18338 0.88681 0.87338 0.87553 1.21670 1.03523 0.93725 1.04882 1.21174 0.95500 0.96732 0.91595 1.21337 1.03258 0.90521 1.00944 1.98381 1.97758 1.27883 1.76930 1.17060 0.91362 0.88809 0.90810 1.23076 0.97251 0.87626 0.98514 1.76462 1.11009 1.21281 1.02572 1.78963 1.06816 1.01220 1.18318 1.47862 1.28173 1.09336 1.22252 0.67050 1.75178 1.09087 1.24146 1.02325 1.67008 1.26051 1.19887 1.10042 1.22617 1.00717 0.95789 0.96953 0.93089 0.93345 0.91364 0.91730 0.92782 0.75371 0.83390 0.83312 0.91696 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.55 12.29 55.43 0.68 -23.87 16 2 C 0.06 1.68 5.35 -17.82 -0.10 1.58 16 3 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -13.29 8.46 -34.44 -0.29 -13.58 16 8 H 0.06 1.42 7.54 -52.48 -0.40 1.03 16 9 C 0.05 1.10 2.72 -90.11 -0.25 0.85 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 11 C -0.10 -2.11 5.75 -24.74 -0.14 -2.25 16 12 C -0.14 -2.37 6.54 -25.07 -0.16 -2.54 16 13 C 0.14 2.17 2.92 -66.81 -0.19 1.97 16 14 H 0.07 0.95 6.40 -51.93 -0.33 0.61 16 15 N -0.70 -10.22 5.20 -52.85 -0.28 -10.50 16 16 C 0.42 5.96 7.65 -155.06 -1.19 4.78 16 17 C -0.21 -2.50 9.23 -39.16 -0.36 -2.86 16 18 C -0.02 -0.26 9.96 -39.33 -0.39 -0.65 16 19 C -0.13 -1.57 6.36 -39.03 -0.25 -1.81 16 20 Cl -0.04 -0.45 26.17 -51.86 -1.36 -1.80 16 21 C 0.26 3.73 6.75 -82.92 -0.56 3.17 16 22 C 0.22 2.99 7.96 -156.29 -1.24 1.74 16 23 N -0.24 -3.14 9.85 32.15 0.32 -2.82 16 24 N -0.06 -0.64 13.47 60.35 0.81 0.18 16 25 N -0.23 -2.04 7.90 60.35 0.48 -1.56 16 26 H 0.48 1.79 8.96 -340.35 -3.05 -1.26 16 27 N -0.26 -3.20 12.38 32.16 0.40 -2.80 16 28 N -0.51 -7.76 10.32 -8.93 -0.09 -7.85 16 29 C -0.12 -2.20 6.13 -25.61 -0.16 -2.36 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.05 1.09 8.05 -51.93 -0.42 0.67 16 32 H 0.07 1.61 7.56 -51.93 -0.39 1.22 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.87 8.04 -51.93 -0.42 0.45 16 35 H 0.41 6.27 8.44 -40.82 -0.34 5.93 16 36 H 0.15 1.52 6.19 -52.49 -0.33 1.19 16 37 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.06 1.19 7.13 -51.93 -0.37 0.82 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -30.01 343.33 -11.04 -41.05 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.87 Total: 1.09 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -5.28 Total: -11.95 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: 2.32 Total: -49.22 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.36 Total: -1.80 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.01 -11.04 -41.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592682429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.434 kcal (2) G-P(sol) polarization free energy of solvation -30.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds