Wall clock time and date at job start Tue Mar 31 2020 19:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99892 * 2 1 4 4 H 1.48504 * 109.47344 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47112 * 299.99866 * 3 2 1 6 6 H 1.48493 * 109.47351 * 60.00000 * 3 2 1 7 7 C 1.37874 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00221 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.43201 * 57.46334 * 9 7 2 11 11 C 1.54889 * 110.48983 * 294.78220 * 9 7 2 12 12 C 1.54885 * 102.74994 * 203.37868 * 11 9 7 13 13 C 1.54272 * 104.19904 * 37.94008 * 12 11 9 14 14 H 1.09002 * 110.07378 * 217.08907 * 13 12 11 15 15 N 1.46495 * 110.03372 * 95.67420 * 13 12 11 16 16 C 1.39058 * 120.00214 * 87.83573 * 15 13 12 17 17 C 1.39206 * 119.62665 * 359.97438 * 16 15 13 18 18 C 1.38393 * 119.30485 * 180.02562 * 17 16 15 19 19 C 1.38765 * 118.58732 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.39353 * 179.97438 * 19 18 17 21 21 C 1.39195 * 119.20964 * 359.97438 * 19 18 17 22 22 C 1.48403 * 119.68562 * 179.97438 * 21 19 18 23 23 N 1.34066 * 126.67811 * 359.97438 * 22 21 19 24 24 N 1.28990 * 107.26767 * 179.97438 * 23 22 21 25 25 N 1.28732 * 108.94839 * 359.97438 * 24 23 22 26 26 H 0.97001 * 125.33511 * 179.97438 * 25 24 23 27 27 N 1.28877 * 109.32161 * 0.24675 * 25 24 23 28 28 N 1.32257 * 119.63312 * 180.27520 * 16 15 13 29 29 C 1.53872 * 106.59428 * 336.39315 * 13 12 11 30 30 H 0.96994 * 120.00598 * 0.02562 * 1 2 3 31 31 H 1.09004 * 110.75321 * 321.69191 * 11 9 7 32 32 H 1.08997 * 110.75916 * 85.05895 * 11 9 7 33 33 H 1.08997 * 110.48512 * 279.26186 * 12 11 9 34 34 H 1.09000 * 110.48996 * 156.61646 * 12 11 9 35 35 H 0.97000 * 120.00159 * 267.83869 * 15 13 12 36 36 H 1.07999 * 120.34064 * 359.97438 * 17 16 15 37 37 H 1.08002 * 120.70260 * 179.97438 * 18 17 16 38 38 H 1.09000 * 110.03630 * 119.28578 * 29 13 12 39 39 H 1.09005 * 110.03245 * 240.71681 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5847 -2.5538 -0.8614 11 6 0.4538 -2.6649 1.3170 12 6 0.2759 -4.2002 1.4180 13 6 1.6126 -4.7709 0.9009 14 1 1.4340 -5.6793 0.3256 15 7 2.5050 -5.0575 2.0267 16 6 2.4486 -6.2934 2.6616 17 6 1.5408 -7.2524 2.2213 18 6 1.4899 -8.4800 2.8583 19 6 2.3513 -8.7127 3.9210 20 17 2.3268 -10.2355 4.7541 21 6 3.2351 -7.7106 4.3111 22 6 4.1605 -7.9480 5.4467 23 7 4.2559 -9.0650 6.1820 24 7 5.1760 -8.8655 7.0638 25 7 5.6538 -7.6802 6.9086 26 1 6.3577 -7.2843 7.4459 27 7 5.0462 -7.1001 5.9312 28 7 3.2539 -6.5424 3.6808 29 6 2.2326 -3.6893 -0.0010 30 1 -0.4851 0.8399 -0.0004 31 1 1.0249 -2.2856 2.1644 32 1 -0.5137 -2.1676 1.2483 33 1 -0.5494 -4.5309 0.7876 34 1 0.1093 -4.4977 2.4533 35 1 3.1353 -4.3851 2.3294 36 1 0.8825 -7.0403 1.3917 37 1 0.7940 -9.2403 2.5356 38 1 3.1975 -3.3776 0.3989 39 1 2.3541 -4.0725 -1.0142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592682429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:17 Heat of formation + Delta-G solvation = 137.792032 kcal Electronic energy + Delta-G solvation = -25233.183545 eV Core-core repulsion = 21431.759311 eV Total energy + Delta-G solvation = -3801.424234 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.100 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.48848 -41.44088 -39.36593 -37.44364 -36.00296 -35.31241 -34.56885 -33.98669 -33.06784 -30.63231 -29.88636 -28.31247 -26.42585 -25.84361 -25.47691 -23.67373 -23.14732 -21.16057 -20.81973 -20.21513 -18.71547 -18.41946 -18.19652 -18.01094 -17.16816 -16.71314 -16.47745 -15.85595 -15.69592 -15.48093 -15.07976 -14.68424 -14.24968 -14.03409 -13.80552 -13.50879 -13.33099 -13.29331 -12.96603 -12.73502 -12.54623 -12.40384 -12.38743 -12.36205 -12.05959 -11.99197 -11.65127 -11.60523 -11.39754 -11.04718 -10.82786 -10.76233 -10.63111 -10.54198 -10.40912 -8.62520 -8.10565 -6.18404 -0.50647 0.15671 0.26620 1.20307 1.21582 1.34499 1.38951 1.42433 1.51870 1.98360 2.43960 2.56774 2.74038 3.04874 3.21193 3.79755 3.86253 3.91003 3.95528 4.04633 4.09531 4.26850 4.36882 4.57060 4.71856 4.79576 4.85443 4.95291 4.97232 5.13020 5.18014 5.22198 5.24693 5.42338 5.52674 5.58638 5.68750 5.93659 6.03169 6.05861 6.41687 6.54318 6.93175 6.97524 7.11255 7.48817 8.97989 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.018472 B = 0.002572 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.469410 B =10883.607066 C =12054.688728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.527 4.527 8 H 0.051 0.949 9 C 0.039 3.961 10 H 0.008 0.992 11 C -0.094 4.094 12 C -0.130 4.130 13 C 0.160 3.840 14 H 0.109 0.891 15 N -0.703 5.703 16 C 0.406 3.594 17 C -0.205 4.205 18 C -0.014 4.014 19 C -0.125 4.125 20 Cl -0.032 7.032 21 C 0.240 3.760 22 C 0.201 3.799 23 N -0.255 5.255 24 N -0.056 5.056 25 N -0.201 5.201 26 H 0.494 0.506 27 N -0.272 5.272 28 N -0.534 5.534 29 C -0.114 4.114 30 H 0.258 0.742 31 H 0.026 0.974 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.402 0.598 36 H 0.171 0.829 37 H 0.185 0.815 38 H 0.057 0.943 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 -20.010 9.324 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.565 4.565 8 H 0.069 0.931 9 C 0.021 3.979 10 H 0.026 0.974 11 C -0.132 4.132 12 C -0.169 4.169 13 C 0.056 3.944 14 H 0.127 0.873 15 N -0.333 5.333 16 C 0.167 3.833 17 C -0.231 4.231 18 C -0.039 4.039 19 C -0.160 4.160 20 Cl -0.003 7.003 21 C 0.099 3.901 22 C -0.080 4.080 23 N -0.129 5.129 24 N -0.051 5.051 25 N -0.052 5.052 26 H 0.353 0.647 27 N -0.125 5.125 28 N -0.254 5.254 29 C -0.152 4.152 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.238 0.762 36 H 0.188 0.812 37 H 0.202 0.798 38 H 0.076 0.924 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.364 -19.678 9.976 22.962 hybrid contribution 0.340 1.677 0.031 1.712 sum 6.704 -18.000 10.007 21.659 Atomic orbital electron populations 1.70066 1.07033 1.26908 1.51711 1.25686 0.95594 1.02133 0.95204 0.85700 0.79262 0.80487 0.77372 1.19203 1.20796 1.21124 1.21620 0.92838 0.92187 1.49877 0.93058 1.19448 0.93020 0.91967 0.93487 0.97408 1.22212 0.99045 0.93847 0.98100 1.22876 0.97236 0.96002 1.00775 1.21750 0.88566 0.98616 0.85488 0.87329 1.45051 1.41553 1.12303 1.34369 1.18530 0.89488 0.87485 0.87788 1.21917 1.02752 0.93291 1.05093 1.21563 0.95045 0.97058 0.90268 1.21532 1.02948 0.90377 1.01169 1.98384 1.97705 1.27301 1.76951 1.17266 0.92312 0.89153 0.91347 1.23192 0.97779 0.88025 0.98963 1.76438 1.11881 1.21505 1.03089 1.78889 1.06583 1.01730 1.17904 1.47877 1.27600 1.08540 1.21202 0.64653 1.75126 1.09484 1.24647 1.03259 1.66902 1.26999 1.20713 1.10813 1.22439 0.99140 0.94928 0.98728 0.93275 0.95489 0.94576 0.89953 0.92008 0.76198 0.81189 0.79823 0.92424 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.10 12.29 21.45 0.26 -51.83 16 2 C 0.01 0.68 5.35 84.65 0.45 1.13 16 3 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 7 C -0.53 -27.73 8.46 25.60 0.22 -27.51 16 8 H 0.05 2.67 7.54 -2.91 -0.02 2.65 16 9 C 0.04 1.80 2.72 -10.47 -0.03 1.77 16 10 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 11 C -0.09 -4.05 5.75 31.88 0.18 -3.87 16 12 C -0.13 -4.05 6.54 31.67 0.21 -3.85 16 13 C 0.16 4.43 2.92 45.72 0.13 4.56 16 14 H 0.11 2.32 6.40 -2.39 -0.02 2.30 16 15 N -0.70 -19.57 5.20 -321.11 -1.67 -21.24 16 16 C 0.41 10.72 7.65 133.10 1.02 11.74 16 17 C -0.20 -4.13 9.23 22.54 0.21 -3.92 16 18 C -0.01 -0.25 9.96 22.43 0.22 -0.02 16 19 C -0.12 -2.87 6.36 22.63 0.14 -2.72 16 20 Cl -0.03 -0.69 26.17 -2.72 -0.07 -0.76 16 21 C 0.24 6.59 6.75 41.94 0.28 6.88 16 22 C 0.20 5.41 7.96 137.35 1.09 6.50 16 23 N -0.26 -6.46 9.85 -52.20 -0.51 -6.98 16 24 N -0.06 -1.16 13.47 37.02 0.50 -0.67 16 25 N -0.20 -3.31 7.90 37.02 0.29 -3.02 16 26 H 0.49 2.97 8.96 -347.53 -3.12 -0.14 16 27 N -0.27 -6.62 12.38 -52.15 -0.65 -7.27 16 28 N -0.53 -15.76 10.32 -182.17 -1.88 -17.64 16 29 C -0.11 -3.98 6.13 31.32 0.19 -3.78 16 30 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 31 H 0.03 1.24 8.05 -2.39 -0.02 1.22 16 32 H 0.04 1.75 7.56 -2.39 -0.02 1.74 16 33 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.06 1.85 8.04 -2.39 -0.02 1.83 16 35 H 0.40 12.18 8.44 -92.71 -0.78 11.39 16 36 H 0.17 2.64 6.19 -2.91 -0.02 2.62 16 37 H 0.18 1.97 8.06 -2.91 -0.02 1.94 16 38 H 0.06 2.09 7.13 -2.39 -0.02 2.07 16 39 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 Total: -1.00 -66.72 343.33 -0.13 -66.85 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -2.76 Total: 10.56 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 4.33 Total: -13.09 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -3.66 Total: -108.64 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.07 Total: -0.76 kcal Total: -66.72 -0.13 -66.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592682429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.643 kcal (2) G-P(sol) polarization free energy of solvation -66.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds