Wall clock time and date at job start Tue Mar 31 2020 17:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31886 * 119.38387 * 2 1 4 4 C 1.32439 * 121.77503 * 180.28104 * 3 2 1 5 5 S 1.76196 * 119.83203 * 179.97438 * 4 3 2 6 6 C 1.81000 * 100.00198 * 359.97438 * 5 4 3 7 7 C 1.50707 * 109.46984 * 179.97438 * 6 5 4 8 8 O 1.20819 * 120.00049 * 0.02562 * 7 6 5 9 9 O 1.34228 * 119.99988 * 180.02562 * 7 6 5 10 10 C 1.45194 * 117.00245 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47286 * 180.02562 * 10 9 7 12 12 C 1.50707 * 109.47068 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99901 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99791 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99592 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00152 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46791 * 90.00086 * 16 14 12 18 18 H 1.48500 * 109.46958 * 210.00158 * 16 14 12 19 19 H 1.48504 * 109.47162 * 330.00183 * 16 14 12 20 20 C 1.40655 * 120.33038 * 359.97438 * 4 3 2 21 21 C 1.43203 * 120.61437 * 179.97438 * 20 4 3 22 22 N 4.76334 * 139.38716 * 0.42307 * 3 1 2 23 23 C 1.39919 * 118.77369 * 0.02562 * 20 4 3 24 24 C 1.50701 * 120.81858 * 179.97438 * 23 20 4 25 25 C 1.38315 * 119.38594 * 180.26857 * 2 1 3 26 26 C 1.50703 * 120.23720 * 359.70141 * 25 2 1 27 27 H 1.09001 * 109.47195 * 269.73265 * 1 2 3 28 28 H 1.09000 * 109.47201 * 29.72912 * 1 2 3 29 29 H 1.08999 * 109.46945 * 149.73016 * 1 2 3 30 30 H 1.08991 * 109.47086 * 299.99922 * 6 5 4 31 31 H 1.08999 * 109.47234 * 60.00270 * 6 5 4 32 32 H 1.09007 * 109.46633 * 299.99993 * 10 9 7 33 33 H 1.08999 * 109.47181 * 59.99754 * 10 9 7 34 34 H 1.08999 * 109.46461 * 299.99183 * 11 10 9 35 35 H 1.08999 * 109.47441 * 59.99632 * 11 10 9 36 36 H 0.97001 * 119.99958 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.46973 * 270.02582 * 24 23 20 38 38 H 1.08997 * 109.46933 * 30.02203 * 24 23 20 39 39 H 1.09000 * 109.47157 * 150.02201 * 24 23 20 40 40 H 1.09000 * 109.47043 * 89.99897 * 26 25 2 41 41 H 1.08995 * 109.47030 * 210.00506 * 26 25 2 42 42 H 1.09006 * 109.46685 * 329.99945 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1541 1.1492 0.0000 4 6 3.4773 1.2045 -0.0055 5 16 4.2893 2.7682 -0.0059 6 6 2.8522 3.8686 0.0016 7 6 3.3173 5.3021 0.0029 8 8 4.4989 5.5539 -0.0013 9 8 2.4187 6.2992 0.0088 10 6 2.9383 7.6550 0.0091 11 6 1.7739 8.6474 0.0168 12 6 2.3133 10.0547 0.0178 13 1 3.3799 10.2241 0.0139 14 6 1.4451 11.1257 0.0238 15 7 1.9158 12.3537 0.0252 16 14 -0.3998 10.8326 0.0299 17 1 -0.8834 10.7514 1.4316 18 1 -1.0814 11.9542 -0.6648 19 1 -0.7010 9.5592 -0.6723 20 6 4.2376 0.0211 -0.0111 21 6 5.6687 0.0738 -0.0176 22 7 6.8039 0.1156 -0.0229 23 6 3.5699 -1.2085 -0.0112 24 6 4.3387 -2.5046 -0.0176 25 6 2.1857 -1.2052 -0.0056 26 6 1.4236 -2.5053 -0.0050 27 1 -0.3634 -0.0048 1.0277 28 1 -0.3633 0.8924 -0.5096 29 1 -0.3633 -0.8876 -0.5180 30 1 2.2480 3.6831 -0.8864 31 1 2.2548 3.6800 0.8935 32 1 3.5520 7.8085 0.8969 33 1 3.5443 7.8121 -0.8831 34 1 1.1600 8.4940 -0.8707 35 1 1.1682 8.4902 0.9093 36 1 1.3051 13.1073 0.0290 37 1 4.5201 -2.8143 -1.0468 38 1 5.2915 -2.3643 0.4928 39 1 3.7607 -3.2725 0.4965 40 1 1.2352 -2.8166 -1.0324 41 1 2.0100 -3.2698 0.5046 42 1 0.4744 -2.3698 0.5135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044944663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:38 Heat of formation + Delta-G solvation = -36.584709 kcal Electronic energy + Delta-G solvation = -24456.584449 eV Core-core repulsion = 20720.889970 eV Total energy + Delta-G solvation = -3735.694479 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12644 -40.14869 -37.12306 -36.39858 -35.25709 -34.13596 -33.36960 -31.25819 -30.21425 -29.32442 -29.13890 -27.17116 -25.21661 -23.65769 -22.02069 -21.32617 -20.66275 -18.96335 -18.10862 -17.73673 -17.41994 -16.64996 -16.52520 -15.81765 -15.62776 -15.09404 -14.36784 -14.29512 -14.20528 -14.14335 -14.01212 -13.75783 -13.67802 -13.44424 -13.24007 -13.10183 -13.03194 -13.00054 -12.79701 -12.62907 -12.48493 -12.15200 -12.13719 -11.57327 -11.35604 -10.95441 -10.75692 -10.70663 -10.17548 -10.09967 -10.06454 -9.97687 -9.83420 -9.76918 -9.38363 -8.64910 -7.97821 -6.15161 -4.16824 0.01098 0.50303 0.84410 1.57869 2.27430 2.30930 2.47478 2.97260 3.23886 3.26011 3.33417 3.33539 3.37344 3.84073 3.92918 4.26292 4.35241 4.36213 4.48414 4.77389 4.78839 4.82666 4.86413 4.91260 5.05876 5.09394 5.12332 5.16651 5.18134 5.28332 5.33712 5.40709 5.54198 5.62998 5.87655 5.90711 5.98559 6.38385 6.63784 7.05761 7.10688 7.16865 7.19343 7.58285 7.90085 8.36743 8.86282 9.43891 10.97296 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.019365 B = 0.002189 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.546051 B =12787.821811 C =14191.710444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.181 3.819 3 N -0.490 5.490 4 C 0.151 3.849 5 S 0.035 5.965 6 C -0.118 4.118 7 C 0.472 3.528 8 O -0.499 6.499 9 O -0.352 6.352 10 C 0.082 3.918 11 C -0.009 4.009 12 C -0.529 4.529 13 H 0.076 0.924 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.882 3.118 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.263 1.263 20 C -0.072 4.072 21 C 0.254 3.746 22 N -0.394 5.394 23 C 0.026 3.974 24 C -0.127 4.127 25 C -0.152 4.152 26 C -0.112 4.112 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.025 0.975 36 H 0.266 0.734 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.360 -35.642 -0.125 35.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.039 3.961 3 N -0.203 5.203 4 C -0.101 4.101 5 S 0.278 5.722 6 C -0.267 4.267 7 C 0.313 3.687 8 O -0.388 6.388 9 O -0.268 6.268 10 C 0.010 3.990 11 C -0.046 4.046 12 C -0.567 4.567 13 H 0.094 0.906 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.708 3.292 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.187 1.187 20 C -0.086 4.086 21 C -0.062 4.062 22 N -0.069 5.069 23 C 0.015 3.985 24 C -0.184 4.184 25 C -0.158 4.158 26 C -0.169 4.169 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.566 -33.993 -0.135 34.029 hybrid contribution -2.121 -0.815 0.032 2.273 sum -3.687 -34.807 -0.103 35.002 Atomic orbital electron populations 1.20895 0.87859 1.04361 1.03874 1.21399 0.97264 0.87275 0.90197 1.68067 1.06260 1.29123 1.16848 1.23595 0.92595 0.97729 0.96154 1.86769 1.06263 0.90102 1.89051 1.23275 1.01471 0.91255 1.10728 1.22408 0.85002 0.87722 0.73567 1.90711 1.18019 1.84916 1.45156 1.86472 1.39918 1.17835 1.82578 1.23506 0.99186 0.74208 1.02129 1.19640 0.93672 0.93344 0.97991 1.20825 0.95639 0.87621 1.52566 0.90609 1.24942 0.99137 0.94853 0.94103 1.69894 1.35387 0.98141 1.49930 0.86743 0.85338 0.78325 0.78755 1.20035 1.21144 1.18741 1.16215 0.85489 0.93338 1.13512 1.25109 0.92085 0.94581 0.94471 1.81272 1.11443 1.06172 1.08014 1.20097 0.93247 0.93782 0.91381 1.21017 1.00118 0.93330 1.03889 1.20388 0.92811 0.97051 1.05541 1.20831 1.00034 0.92981 1.03008 0.89465 0.89682 0.89834 0.84598 0.84595 0.91398 0.91368 0.95280 0.95709 0.92393 0.89338 0.90802 0.89438 0.90480 0.90741 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.48 9.33 36.00 0.34 -0.14 16 2 C 0.18 1.28 6.78 -82.54 -0.56 0.72 16 3 N -0.49 -4.68 9.03 -7.93 -0.07 -4.76 16 4 C 0.15 1.60 7.01 -16.38 -0.11 1.48 16 5 S 0.03 0.44 20.20 -107.50 -2.17 -1.73 16 6 C -0.12 -1.43 5.43 36.01 0.20 -1.24 16 7 C 0.47 7.79 7.98 36.01 0.29 8.08 16 8 O -0.50 -9.66 15.61 -18.74 -0.29 -9.95 16 9 O -0.35 -6.47 10.22 -39.25 -0.40 -6.87 16 10 C 0.08 1.74 5.40 37.16 0.20 1.94 16 11 C -0.01 -0.21 4.42 -27.88 -0.12 -0.34 16 12 C -0.53 -14.94 9.66 -34.44 -0.33 -15.27 16 13 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 14 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 15 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 16 Si 0.88 21.20 27.47 -169.99 -4.67 16.54 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 20 C -0.07 -0.69 5.77 -106.43 -0.61 -1.31 16 21 C 0.25 2.85 12.92 -22.47 -0.29 2.56 16 22 N -0.39 -5.17 18.54 41.84 0.78 -4.40 16 23 C 0.03 0.18 5.95 -103.92 -0.62 -0.44 16 24 C -0.13 -0.55 9.28 36.01 0.33 -0.21 16 25 C -0.15 -0.87 5.89 -104.52 -0.62 -1.49 16 26 C -0.11 -0.27 8.80 36.01 0.32 0.05 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.18 6.67 -51.93 -0.35 -0.17 16 30 H 0.14 1.42 8.12 -51.92 -0.42 1.00 16 31 H 0.14 1.42 8.12 -51.92 -0.42 1.00 16 32 H 0.07 1.44 8.13 -51.93 -0.42 1.02 16 33 H 0.07 1.45 8.13 -51.93 -0.42 1.03 16 34 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 35 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.39 7.19 -51.93 -0.37 0.02 16 39 H 0.09 0.19 6.07 -51.93 -0.31 -0.12 16 40 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.07 0.11 6.05 -51.93 -0.31 -0.20 16 42 H 0.08 0.11 6.70 -51.93 -0.35 -0.24 16 LS Contribution 374.71 15.07 5.65 5.65 Total: -1.00 -33.87 374.71 -7.53 -41.41 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -5.43 Total: -5.80 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.70 Total: -3.64 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 1.48 Total: -35.60 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.69 Total: -16.83 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 16 Polarization: 0.44 SS G_CDS: -2.17 Total: -1.73 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.87 -7.53 -41.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044944663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.823 kcal (2) G-P(sol) polarization free energy of solvation -33.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds