Wall clock time and date at job start Tue Mar 31 2020 18:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47229 * 2 1 4 4 H 1.09000 * 109.65727 * 54.70432 * 3 2 1 5 5 C 1.50435 * 109.56817 * 175.00124 * 3 2 1 6 6 O 1.21282 * 118.48738 * 287.11643 * 5 3 2 7 7 N 1.33378 * 123.02132 * 107.14440 * 5 3 2 8 8 C 1.45641 * 124.59296 * 4.28854 * 7 5 3 9 9 C 1.52994 * 110.74081 * 338.12813 * 8 7 5 10 10 N 1.47043 * 109.56707 * 294.40920 * 3 2 1 11 11 C 1.34782 * 121.35314 * 102.90686 * 10 3 2 12 12 O 1.21549 * 119.99908 * 179.14246 * 11 10 3 13 13 C 1.47864 * 119.99926 * 359.14586 * 11 10 3 14 14 C 1.39675 * 120.10250 * 337.75618 * 13 11 10 15 15 C 1.38035 * 120.04021 * 180.02562 * 14 13 11 16 16 C 1.38182 * 120.24285 * 359.97438 * 15 14 13 17 17 C 1.39172 * 120.20415 * 359.95490 * 16 15 14 18 18 S 1.76199 * 120.02379 * 179.97438 * 17 16 15 19 19 C 1.76194 * 100.00243 * 270.42840 * 18 17 16 20 20 H 1.07999 * 119.99763 * 353.91693 * 19 18 17 21 21 C 1.38726 * 120.00139 * 173.91822 * 19 18 17 22 22 N 1.31630 * 120.00066 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00253 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47244 * 89.99410 * 23 21 19 25 25 H 1.48493 * 109.47173 * 209.99832 * 23 21 19 26 26 H 1.48500 * 109.46953 * 329.99875 * 23 21 19 27 27 C 1.38879 * 119.95753 * 359.79039 * 17 16 15 28 28 H 1.09002 * 109.47353 * 59.99982 * 1 2 3 29 29 H 1.09003 * 109.46761 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47094 * 299.99670 * 1 2 3 31 31 H 1.09008 * 109.46979 * 240.00784 * 2 1 3 32 32 H 1.08998 * 109.47399 * 120.00537 * 2 1 3 33 33 H 0.97008 * 117.70189 * 184.31788 * 7 5 3 34 34 H 1.08998 * 109.21616 * 98.43414 * 8 7 5 35 35 H 1.09003 * 109.22170 * 217.81402 * 8 7 5 36 36 H 1.08995 * 109.72419 * 166.37168 * 9 8 7 37 37 H 1.09002 * 109.71911 * 287.03188 * 9 8 7 38 38 H 1.08005 * 119.97417 * 0.02562 * 14 13 11 39 39 H 1.07996 * 119.87693 * 179.97438 * 15 14 13 40 40 H 1.08001 * 119.89443 * 179.97438 * 16 15 14 41 41 H 0.97001 * 119.99912 * 180.02562 * 22 21 19 42 42 H 1.08001 * 120.12271 * 180.22849 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6031 1.9859 0.8378 5 6 3.5393 1.4468 0.1235 6 8 4.0323 1.1645 1.1950 7 7 4.3513 1.7474 -0.8910 8 6 3.9045 2.1912 -2.2042 9 6 2.4569 1.7652 -2.4565 10 7 1.6644 2.0977 -1.2617 11 6 0.6363 2.9672 -1.3213 12 8 0.3569 3.5066 -2.3742 13 6 -0.1516 3.2651 -0.1061 14 6 -0.1686 2.3595 0.9572 15 6 -0.9049 2.6386 2.0909 16 6 -1.6272 3.8133 2.1800 17 6 -1.6163 4.7234 1.1272 18 16 -2.5396 6.2195 1.2455 19 6 -4.0792 5.6826 0.5778 20 1 -4.1691 4.6921 0.1568 21 6 -5.1758 6.5321 0.5928 22 7 -5.0663 7.7392 1.1063 23 14 -6.8082 5.9627 -0.1145 24 1 -7.6103 5.3125 0.9528 25 1 -7.5510 7.1321 -0.6491 26 1 -6.5611 4.9906 -1.2096 27 6 -0.8741 4.4536 -0.0152 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.3066 1.6642 -0.7440 34 1 3.9733 3.2776 -2.2584 35 1 4.5459 1.7525 -2.9687 36 1 2.0611 2.3003 -3.3197 37 1 2.4158 0.6913 -2.6382 38 1 0.3948 1.4403 0.8922 39 1 -0.9166 1.9364 2.9113 40 1 -2.2018 4.0258 3.0694 41 1 -5.8332 8.3331 1.1171 42 1 -0.8608 5.1597 -0.8323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079471464.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:49 Heat of formation + Delta-G solvation = 22.509426 kcal Electronic energy + Delta-G solvation = -26757.742876 eV Core-core repulsion = 23024.610911 eV Total energy + Delta-G solvation = -3733.131965 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.70204 -39.59894 -38.12008 -36.87872 -35.91822 -32.98677 -32.51556 -31.17343 -30.54962 -29.75356 -27.46247 -25.58762 -24.73085 -23.62726 -22.65171 -21.96576 -20.68820 -19.33564 -18.36930 -17.53128 -17.50398 -16.93471 -16.42604 -15.96571 -15.85002 -15.28549 -14.86278 -14.83370 -14.46728 -14.30712 -14.08165 -13.96094 -13.44933 -13.21814 -13.04348 -12.87990 -12.76439 -12.43959 -12.15549 -11.93977 -11.90144 -11.52786 -11.21194 -11.14144 -11.09081 -10.84126 -10.66199 -10.16740 -9.96795 -9.65732 -9.54323 -9.17623 -9.02664 -8.97454 -8.62602 -8.00691 -6.72810 -6.29528 -4.03819 1.10544 1.59469 2.19063 2.44087 2.78388 2.93487 3.19751 3.20047 3.27206 3.45131 3.95878 3.98808 4.21465 4.23080 4.33609 4.46964 4.63787 4.70658 4.86104 4.90619 4.98369 5.05540 5.07946 5.18521 5.27465 5.33249 5.42273 5.46575 5.60739 5.68248 5.69030 5.81942 5.87566 5.98385 6.05223 6.21038 6.35048 6.49162 6.58853 6.84743 6.87061 7.04303 7.16720 7.56863 7.76768 8.02566 8.32034 9.16367 10.77167 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.019681 B = 0.003116 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.367017 B = 8984.479207 C = 9192.478750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 C 0.090 3.910 4 H 0.161 0.839 5 C 0.519 3.481 6 O -0.543 6.543 7 N -0.717 5.717 8 C 0.095 3.905 9 C 0.094 3.906 10 N -0.612 5.612 11 C 0.575 3.425 12 O -0.525 6.525 13 C -0.156 4.156 14 C -0.164 4.164 15 C -0.142 4.142 16 C -0.052 4.052 17 C -0.106 4.106 18 S -0.036 6.036 19 C -0.519 4.519 20 H 0.076 0.924 21 C 0.074 3.926 22 N -0.870 5.870 23 Si 0.921 3.079 24 H -0.276 1.276 25 H -0.281 1.281 26 H -0.271 1.271 27 C -0.019 4.019 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.400 0.600 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.190 0.810 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.270 0.730 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.738 -16.063 -4.186 23.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.170 4.170 3 C -0.016 4.016 4 H 0.177 0.823 5 C 0.305 3.695 6 O -0.420 6.420 7 N -0.369 5.369 8 C -0.030 4.030 9 C -0.028 4.028 10 N -0.348 5.348 11 C 0.366 3.634 12 O -0.402 6.402 13 C -0.161 4.161 14 C -0.180 4.180 15 C -0.162 4.162 16 C -0.073 4.073 17 C -0.216 4.216 18 S 0.199 5.801 19 C -0.667 4.667 20 H 0.094 0.906 21 C -0.135 4.135 22 N -0.506 5.506 23 Si 0.747 3.253 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.195 1.195 27 C -0.040 4.040 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.236 0.764 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.133 0.867 37 H 0.098 0.902 38 H 0.206 0.794 39 H 0.144 0.856 40 H 0.150 0.850 41 H 0.079 0.921 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 16.753 -14.593 -3.824 22.544 hybrid contribution -0.947 -1.534 -0.997 2.060 sum 15.807 -16.126 -4.821 23.090 Atomic orbital electron populations 1.22714 0.94257 1.03177 1.04655 1.21873 0.97359 0.93528 1.04212 1.22639 0.91294 0.97103 0.90588 0.82297 1.20258 0.89605 0.76047 0.83630 1.90796 1.75997 1.49092 1.26069 1.45375 1.10506 1.68283 1.12726 1.21800 0.96146 1.00798 0.84247 1.21926 0.89236 1.01755 0.89917 1.48071 1.32907 1.44854 1.08954 1.18457 0.78838 0.77286 0.88824 1.90783 1.68004 1.50382 1.30985 1.19721 1.03442 0.98140 0.94810 1.23522 1.00107 1.01085 0.93307 1.21124 0.98984 0.98078 0.97989 1.22035 0.94908 0.92111 0.98214 1.22845 1.00864 1.02858 0.95059 1.83613 1.08794 1.04819 1.82916 1.22832 0.94746 1.03867 1.45227 0.90612 1.24998 0.98934 0.94646 0.94968 1.69990 1.31433 1.06584 1.42576 0.86121 0.81546 0.78411 0.79266 1.20166 1.20661 1.19518 1.21894 0.91087 0.94254 0.96799 0.91782 0.91675 0.88135 0.90712 0.89092 0.76416 0.90817 0.89080 0.86662 0.90244 0.79397 0.85627 0.85027 0.92060 0.84539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 8.28 37.16 0.31 -1.39 16 2 C -0.13 -1.07 5.27 -26.73 -0.14 -1.21 16 3 C 0.09 0.92 2.19 -68.91 -0.15 0.77 16 4 H 0.16 1.82 4.07 -51.96 -0.21 1.61 16 5 C 0.52 5.61 7.10 -11.74 -0.08 5.53 16 6 O -0.54 -7.59 17.80 5.56 0.10 -7.49 16 7 N -0.72 -5.64 5.42 -61.33 -0.33 -5.97 16 8 C 0.10 0.58 7.34 -4.51 -0.03 0.55 16 9 C 0.09 0.75 6.39 -3.67 -0.02 0.73 16 10 N -0.61 -6.81 2.27 -167.72 -0.38 -7.19 16 11 C 0.57 8.77 6.72 -12.32 -0.08 8.69 16 12 O -0.53 -9.59 16.04 5.32 0.09 -9.51 16 13 C -0.16 -2.56 5.64 -104.99 -0.59 -3.16 16 14 C -0.16 -2.23 4.99 -39.12 -0.20 -2.42 16 15 C -0.14 -2.02 9.89 -39.68 -0.39 -2.41 16 16 C -0.05 -0.93 9.79 -39.26 -0.38 -1.31 16 17 C -0.11 -2.23 5.45 -39.00 -0.21 -2.45 16 18 S -0.04 -0.91 21.41 -107.50 -2.30 -3.22 16 19 C -0.52 -14.60 9.46 30.91 0.29 -14.30 16 20 H 0.08 2.12 7.79 -52.49 -0.41 1.71 16 21 C 0.07 2.05 5.49 -17.46 -0.10 1.96 16 22 N -0.87 -25.33 13.22 55.49 0.73 -24.60 16 23 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 C -0.02 -0.37 9.34 -38.92 -0.36 -0.73 16 28 H 0.06 0.69 6.93 -51.93 -0.36 0.33 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.94 4.34 -51.93 -0.23 0.71 16 31 H 0.07 0.54 7.34 -51.92 -0.38 0.15 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.40 2.58 8.80 -40.82 -0.36 2.22 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.12 1.01 7.06 -51.93 -0.37 0.64 16 37 H 0.08 0.49 7.39 -51.93 -0.38 0.10 16 38 H 0.19 2.04 1.09 -63.10 -0.07 1.97 16 39 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 40 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.14 2.86 7.81 -52.49 -0.41 2.45 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -34.40 349.96 -8.84 -43.25 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.85 Total: 4.29 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -2.15 Total: -11.17 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.02 Total: -37.76 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.18 Total: -17.00 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.40 -8.84 -43.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079471464.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.756 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds