Wall clock time and date at job start Tue Mar 31 2020 17:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38383 * 119.84844 * 2 1 4 4 C 1.37930 * 120.15296 * 180.27730 * 3 2 1 5 5 C 1.39652 * 119.84298 * 359.74389 * 4 3 2 6 6 C 1.43203 * 120.14686 * 179.97438 * 5 4 3 7 7 N 4.80108 * 136.86018 * 0.31074 * 3 1 2 8 8 C 1.39611 * 119.70222 * 0.02562 * 5 4 3 9 9 C 1.37975 * 119.84102 * 359.97438 * 8 5 4 10 10 S 1.76208 * 119.91979 * 179.97438 * 9 8 5 11 11 O 1.42101 * 106.40125 * 5.76123 * 10 9 8 12 12 O 1.42093 * 106.40005 * 232.84098 * 10 9 8 13 13 N 1.65600 * 107.21452 * 119.29976 * 10 9 8 14 14 C 1.36937 * 120.00005 * 283.59651 * 13 10 9 15 15 H 1.07993 * 119.99966 * 28.76137 * 14 13 10 16 16 C 1.38816 * 119.99481 * 208.75811 * 14 13 10 17 17 N 1.31610 * 120.00453 * 357.64535 * 16 14 13 18 18 Si 1.86805 * 119.99473 * 177.64093 * 16 14 13 19 19 H 1.48498 * 109.47100 * 90.00337 * 18 16 14 20 20 H 1.48505 * 109.46951 * 210.00036 * 18 16 14 21 21 H 1.48493 * 109.47168 * 330.00145 * 18 16 14 22 22 C 1.46500 * 119.99557 * 103.60051 * 13 10 9 23 23 C 1.55241 * 110.57709 * 213.38812 * 22 13 10 24 24 C 1.54888 * 102.58786 * 203.33718 * 23 22 13 25 25 C 1.54264 * 104.31173 * 37.93626 * 24 23 22 26 26 C 1.53869 * 106.59745 * 336.32065 * 25 24 23 27 27 H 1.08995 * 109.47258 * 262.55324 * 1 2 3 28 28 H 1.09005 * 109.47099 * 22.55006 * 1 2 3 29 29 H 1.09000 * 109.47068 * 142.54733 * 1 2 3 30 30 H 1.08002 * 119.92602 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.07464 * 179.72365 * 4 3 2 32 32 H 1.07999 * 120.07945 * 180.02562 * 8 5 4 33 33 H 0.97002 * 120.00481 * 180.02562 * 17 16 14 34 34 H 1.08997 * 110.43867 * 335.97559 * 22 13 10 35 35 H 1.09010 * 110.89337 * 85.04882 * 23 22 13 36 36 H 1.08998 * 110.77133 * 321.57358 * 23 22 13 37 37 H 1.08998 * 110.48806 * 279.18822 * 24 23 22 38 38 H 1.09006 * 110.48556 * 156.68297 * 24 23 22 39 39 H 1.09005 * 110.03206 * 95.60679 * 25 24 23 40 40 H 1.08994 * 110.03287 * 216.98871 * 25 24 23 41 41 H 1.09006 * 110.03107 * 119.28403 * 26 25 24 42 42 H 1.09001 * 110.03244 * 240.66605 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5750 1.2076 -0.0058 5 6 4.2764 0.0000 -0.0062 6 6 5.7084 0.0000 -0.0127 7 7 6.8444 0.0000 -0.0178 8 6 3.5752 -1.2073 -0.0013 9 6 2.1955 -1.1998 0.0044 10 16 1.3084 -2.7223 0.0099 11 8 2.2788 -3.7516 0.1439 12 8 0.3905 -2.6557 -1.0727 13 7 0.3986 -2.7544 1.3932 14 6 0.9928 -3.0226 2.5974 15 1 2.0287 -2.7633 2.7580 16 6 0.2633 -3.6277 3.6117 17 7 -1.0114 -3.9015 3.4323 18 14 1.0913 -4.0535 5.2312 19 1 0.9689 -2.9065 6.1663 20 1 0.4356 -5.2471 5.8235 21 1 2.5273 -4.3456 4.9912 22 6 -1.0420 -2.4960 1.3285 23 6 -1.5242 -1.7695 2.6129 24 6 -3.0317 -2.1230 2.6548 25 6 -3.0940 -3.5856 2.1685 26 6 -1.8290 -3.8227 1.3252 27 1 -0.3633 -0.1332 1.0189 28 1 -0.3633 0.9491 -0.3941 29 1 -0.3633 -0.8158 -0.6249 30 1 1.6521 2.1335 -0.0004 31 1 4.1113 2.1450 -0.0103 32 1 4.1115 -2.1447 -0.0012 33 1 -1.5212 -4.3240 4.1412 34 1 -1.2837 -1.9069 0.4438 35 1 -1.3823 -0.6921 2.5267 36 1 -1.0116 -2.1585 3.4926 37 1 -3.5946 -1.4736 1.9844 38 1 -3.4142 -2.0426 3.6724 39 1 -3.1059 -4.2629 3.0225 40 1 -3.9843 -3.7386 1.5586 41 1 -1.2269 -4.6151 1.7700 42 1 -2.1050 -4.0915 0.3055 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080214152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:09 Heat of formation + Delta-G solvation = 45.387146 kcal Electronic energy + Delta-G solvation = -28163.528679 eV Core-core repulsion = 24431.388767 eV Total energy + Delta-G solvation = -3732.139912 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -39.57290 -38.23710 -36.65641 -36.36818 -35.00338 -33.58284 -32.94113 -31.51244 -31.33652 -27.78829 -27.40265 -26.42573 -24.26174 -23.25604 -22.47006 -19.94605 -19.64180 -19.20046 -18.35107 -16.97650 -16.55240 -16.02367 -15.65215 -15.57881 -14.90495 -14.54713 -14.33247 -14.25447 -14.08073 -13.85484 -13.34889 -13.05981 -12.96977 -12.66474 -12.48163 -12.21387 -12.13596 -11.94982 -11.77384 -11.48578 -11.41628 -11.28624 -11.16477 -11.01148 -10.83055 -10.61862 -10.35062 -10.24209 -9.96661 -9.90679 -9.68984 -9.60358 -9.36692 -8.91103 -8.76461 -8.43662 -7.42746 -5.94414 -3.98887 0.61907 0.99686 1.28854 2.61498 2.77450 3.18188 3.27524 3.31668 3.66061 3.80445 3.96674 4.34289 4.50533 4.64459 4.76427 4.88902 5.00034 5.12149 5.37986 5.53011 5.62187 5.76964 5.82619 5.90433 5.97745 6.00833 6.03142 6.07959 6.23392 6.29940 6.42103 6.66425 6.70055 6.78439 6.82407 6.84709 6.96292 7.16301 7.26906 7.38206 7.42105 7.51443 7.69688 8.07220 8.17446 8.53639 8.92550 9.29699 10.69726 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.013656 B = 0.005351 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.881745 B = 5231.600807 C = 6007.917336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.059 3.941 3 C -0.148 4.148 4 C -0.025 4.025 5 C -0.067 4.067 6 C 0.263 3.737 7 N -0.425 5.425 8 C 0.031 3.969 9 C -0.672 4.672 10 S 2.670 3.330 11 O -0.962 6.962 12 O -0.978 6.978 13 N -0.841 5.841 14 C -0.298 4.298 15 H 0.092 0.908 16 C 0.025 3.975 17 N -0.849 5.849 18 Si 0.913 3.087 19 H -0.282 1.282 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.168 3.832 23 C -0.116 4.116 24 C -0.107 4.107 25 C -0.076 4.076 26 C -0.094 4.094 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.150 0.850 33 H 0.261 0.739 34 H 0.060 0.940 35 H 0.011 0.989 36 H 0.141 0.859 37 H 0.033 0.967 38 H 0.042 0.958 39 H 0.062 0.938 40 H 0.016 0.984 41 H 0.114 0.886 42 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.561 8.464 -2.986 9.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.057 3.943 3 C -0.166 4.166 4 C -0.045 4.045 5 C -0.072 4.072 6 C -0.052 4.052 7 N -0.100 5.100 8 C 0.009 3.991 9 C -0.753 4.753 10 S 2.759 3.241 11 O -0.952 6.952 12 O -0.968 6.968 13 N -0.675 5.675 14 C -0.428 4.428 15 H 0.109 0.891 16 C -0.176 4.176 17 N -0.491 5.491 18 Si 0.741 3.259 19 H -0.208 1.208 20 H -0.210 1.210 21 H -0.197 1.197 22 C 0.062 3.938 23 C -0.154 4.154 24 C -0.145 4.145 25 C -0.114 4.114 26 C -0.133 4.133 27 H 0.126 0.874 28 H 0.099 0.901 29 H 0.126 0.874 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.167 0.833 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.029 0.971 36 H 0.158 0.842 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.035 0.965 41 H 0.132 0.868 42 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 0.192 7.774 -3.568 8.556 hybrid contribution 0.170 0.689 1.151 1.352 sum 0.361 8.463 -2.417 8.809 Atomic orbital electron populations 1.22026 0.90077 1.05896 1.06059 1.19804 0.96447 0.91562 0.86498 1.21088 0.93545 0.98151 1.03862 1.21306 0.94373 0.96459 0.92386 1.15982 0.84383 0.95126 1.11674 1.25618 0.92509 0.93728 0.93372 1.81223 1.11941 1.07321 1.09550 1.20971 0.92350 0.97700 0.88069 1.31609 1.05592 1.22299 1.15834 1.02489 0.73630 0.74222 0.73710 1.93500 1.62669 1.52503 1.86516 1.93465 1.62680 1.87083 1.53563 1.53027 1.14260 1.80738 1.19495 1.18997 0.96787 1.37238 0.89775 0.89060 1.25155 0.96057 0.96836 0.99546 1.71156 1.05876 1.40811 1.31281 0.86133 0.79581 0.78115 0.82112 1.20817 1.20952 1.19725 1.21602 0.79369 0.96277 0.96591 1.23587 0.94856 0.93944 1.03031 1.22058 0.97381 0.96772 0.98302 1.21673 0.94988 0.96162 0.98602 1.22676 0.96529 1.00512 0.93603 0.87423 0.90143 0.87360 0.84368 0.84717 0.83275 0.92650 0.92215 0.97064 0.84155 0.94862 0.93951 0.91912 0.96546 0.86834 0.98056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 7.86 36.01 0.28 -2.28 16 2 C 0.06 0.85 5.88 -104.53 -0.61 0.24 16 3 C -0.15 -1.70 9.65 -39.64 -0.38 -2.08 16 4 C -0.02 -0.27 9.76 -39.17 -0.38 -0.66 16 5 C -0.07 -0.91 5.73 -106.93 -0.61 -1.52 16 6 C 0.26 3.74 15.33 -22.47 -0.34 3.39 16 7 N -0.42 -6.72 18.54 41.84 0.78 -5.95 16 8 C 0.03 0.48 9.25 -39.17 -0.36 0.12 16 9 C -0.67 -11.35 5.89 -39.64 -0.23 -11.58 16 10 S 2.67 54.53 4.92 -107.50 -0.53 54.01 16 11 O -0.96 -22.11 16.44 -57.17 -0.94 -23.05 16 12 O -0.98 -20.67 14.53 -57.17 -0.83 -21.50 16 13 N -0.84 -17.96 2.68 -51.64 -0.14 -18.09 16 14 C -0.30 -6.76 8.64 -15.06 -0.13 -6.89 16 15 H 0.09 2.05 7.83 -52.49 -0.41 1.64 16 16 C 0.03 0.57 3.84 -17.43 -0.07 0.50 16 17 N -0.85 -18.66 3.63 55.49 0.20 -18.46 16 18 Si 0.91 18.64 29.55 -169.99 -5.02 13.61 16 19 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 C 0.17 3.41 1.65 -66.08 -0.11 3.30 16 23 C -0.12 -2.25 5.35 -24.55 -0.13 -2.38 16 24 C -0.11 -1.91 6.64 -25.07 -0.17 -2.08 16 25 C -0.08 -1.44 5.96 -25.62 -0.15 -1.59 16 26 C -0.09 -1.99 5.63 -25.62 -0.14 -2.14 16 27 H 0.11 1.57 5.09 -51.93 -0.26 1.30 16 28 H 0.08 0.84 8.03 -51.93 -0.42 0.43 16 29 H 0.11 1.71 4.06 -51.93 -0.21 1.50 16 30 H 0.14 1.14 8.05 -52.49 -0.42 0.72 16 31 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.15 2.31 7.34 -52.49 -0.39 1.92 16 33 H 0.26 5.60 7.47 -40.82 -0.31 5.30 16 34 H 0.06 1.14 4.71 -51.93 -0.24 0.90 16 35 H 0.01 0.20 6.65 -51.92 -0.35 -0.15 16 36 H 0.14 3.04 3.80 -59.99 -0.23 2.81 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.21 6.54 -51.93 -0.34 0.87 16 40 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.11 2.70 5.80 -51.93 -0.30 2.39 16 42 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 LS Contribution 334.67 15.07 5.04 5.04 Total: -1.00 -26.25 334.67 -9.78 -36.02 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.78 Total: 4.02 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -3.55 Total: -25.66 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.84 Total: -42.50 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -1.77 Total: -44.55 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.61 kcal Atomic # 16 Polarization: 54.53 SS G_CDS: -0.53 Total: 54.01 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.25 -9.78 -36.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080214152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.411 kcal (2) G-P(sol) polarization free energy of solvation -26.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds