Wall clock time and date at job start Tue Mar 31 2020 17:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39335 * 119.12823 * 2 1 4 4 C 1.36575 * 119.93860 * 180.02562 * 3 2 1 5 5 C 1.40774 * 118.14680 * 359.97438 * 4 3 2 6 6 C 1.40427 * 121.37085 * 180.02562 * 5 4 3 7 7 C 1.36132 * 119.61662 * 180.02562 * 6 5 4 8 8 C 1.39356 * 120.86108 * 359.95753 * 7 6 5 9 9 C 1.36078 * 121.07296 * 0.02642 * 8 7 6 10 10 S 1.76197 * 120.12577 * 179.97438 * 9 8 7 11 11 O 1.42104 * 106.40120 * 228.56104 * 10 9 8 12 12 O 1.42105 * 106.40443 * 1.48035 * 10 9 8 13 13 N 1.65598 * 107.22102 * 115.02006 * 10 9 8 14 14 C 1.46505 * 120.00281 * 89.99535 * 13 10 9 15 15 C 1.46501 * 120.00019 * 270.00224 * 13 10 9 16 16 H 1.09003 * 109.47203 * 359.97438 * 15 13 10 17 17 C 1.53003 * 109.47036 * 239.99632 * 15 13 10 18 18 C 1.50694 * 109.47470 * 119.99871 * 15 13 10 19 19 H 1.07997 * 120.00176 * 34.99370 * 18 15 13 20 20 C 1.37887 * 120.00156 * 215.00143 * 18 15 13 21 21 N 1.31512 * 119.99970 * 184.91284 * 20 18 15 22 22 Si 1.86797 * 119.99749 * 4.91325 * 20 18 15 23 23 H 1.48498 * 109.47447 * 84.83277 * 22 20 18 24 24 H 1.48503 * 109.47113 * 204.83675 * 22 20 18 25 25 H 1.48504 * 109.47082 * 324.82935 * 22 20 18 26 26 C 1.40592 * 119.74883 * 359.97438 * 9 8 7 27 27 N 1.31090 * 119.12748 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47338 * 89.99342 * 1 2 3 29 29 H 1.09003 * 109.47226 * 210.00010 * 1 2 3 30 30 H 1.09007 * 109.47365 * 329.99749 * 1 2 3 31 31 H 1.08000 * 120.02957 * 0.28311 * 3 2 1 32 32 H 1.07998 * 120.92742 * 180.02562 * 4 3 2 33 33 H 1.08003 * 120.19380 * 0.02562 * 6 5 4 34 34 H 1.07998 * 119.57273 * 179.97438 * 7 6 5 35 35 H 1.08004 * 119.46291 * 180.02562 * 8 7 6 36 36 H 1.08998 * 109.46354 * 89.99903 * 14 13 10 37 37 H 1.09000 * 109.47417 * 210.00370 * 14 13 10 38 38 H 1.09004 * 109.46641 * 330.00613 * 14 13 10 39 39 H 1.08999 * 109.46862 * 54.97596 * 17 15 13 40 40 H 1.09003 * 109.47305 * 174.97249 * 17 15 13 41 41 H 1.08996 * 109.47164 * 294.97403 * 17 15 13 42 42 H 0.97004 * 120.00003 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1852 1.2171 0.0000 4 6 3.5508 1.2365 -0.0005 5 6 4.2323 0.0047 -0.0005 6 6 5.6354 -0.0544 -0.0005 7 6 6.2577 -1.2652 -0.0010 8 6 5.5205 -2.4478 -0.0007 9 6 4.1599 -2.4273 -0.0003 10 16 3.2527 -3.9378 -0.0006 11 8 2.2725 -3.8170 -1.0222 12 8 4.2143 -4.9835 0.0341 13 7 2.4272 -4.0141 1.4329 14 6 1.0763 -3.4557 1.5309 15 6 3.0477 -4.6399 2.6032 16 1 4.0444 -4.9943 2.3401 17 6 2.1917 -5.8216 3.0636 18 6 3.1509 -3.6303 3.7172 19 1 2.3781 -2.8869 3.8456 20 6 4.2321 -3.6556 4.5726 21 7 4.2754 -2.8383 5.6020 22 14 5.6353 -4.8507 4.2691 23 1 6.5915 -4.2560 3.3010 24 1 6.3351 -5.1280 5.5492 25 1 5.0949 -6.1185 3.7159 26 6 3.4808 -1.1963 0.0002 27 7 2.1450 -1.1451 0.0005 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6315 2.1444 0.0046 32 1 4.0927 2.1706 -0.0001 33 1 6.2174 0.8554 -0.0001 34 1 7.3368 -1.3098 -0.0014 35 1 6.0376 -3.3961 -0.0006 36 1 0.3462 -4.2249 1.2793 37 1 0.9003 -3.1065 2.5484 38 1 0.9774 -2.6202 0.8378 39 1 2.0429 -6.5086 2.2306 40 1 2.6975 -6.3414 3.8773 41 1 1.2252 -5.4566 3.4108 42 1 5.0362 -2.8559 6.2036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084937726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:23 Heat of formation + Delta-G solvation = -10.774770 kcal Electronic energy + Delta-G solvation = -28116.189031 eV Core-core repulsion = 24381.613756 eV Total energy + Delta-G solvation = -3734.575276 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.79933 -37.39661 -36.54497 -36.14379 -35.16194 -33.59715 -32.42425 -31.97830 -30.19035 -29.79700 -27.78692 -25.53414 -25.09657 -23.86681 -22.85210 -22.40796 -20.49958 -18.43862 -18.09406 -17.57031 -17.09711 -16.61107 -16.20227 -15.67237 -15.27825 -14.68273 -14.63630 -14.38272 -13.92778 -13.57900 -13.45976 -13.12403 -13.03742 -12.83564 -12.53940 -12.49021 -12.30266 -12.16632 -11.78759 -11.63592 -11.46549 -11.39343 -11.37140 -11.23468 -11.11103 -10.78653 -10.71778 -10.63367 -10.57793 -10.16516 -9.79076 -9.31129 -9.23812 -8.64529 -8.62418 -8.43995 -7.87831 -6.18478 -4.17597 0.20177 0.89138 1.15955 1.86565 2.86160 3.23635 3.32213 3.39645 3.66769 4.04356 4.19018 4.33594 4.38646 4.57048 4.63754 4.78899 4.89262 5.03477 5.14685 5.15881 5.31299 5.36963 5.51585 5.61101 5.61906 5.84232 5.90425 5.95370 6.03420 6.04736 6.17016 6.29737 6.32210 6.35777 6.49137 6.53096 6.63729 6.76404 6.79757 6.91166 7.06411 7.28333 7.52258 7.76516 7.95974 8.44483 8.88141 9.43619 10.93659 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.011437 B = 0.006197 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.616838 B = 4517.564070 C = 4864.822654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.178 3.822 3 C -0.181 4.181 4 C -0.044 4.044 5 C -0.127 4.127 6 C -0.044 4.044 7 C -0.144 4.144 8 C 0.016 3.984 9 C -0.646 4.646 10 S 2.687 3.313 11 O -0.958 6.958 12 O -0.975 6.975 13 N -0.965 5.965 14 C 0.092 3.908 15 C 0.230 3.770 16 H 0.055 0.945 17 C -0.141 4.141 18 C -0.514 4.514 19 H 0.082 0.918 20 C 0.078 3.922 21 N -0.890 5.890 22 Si 0.855 3.145 23 H -0.270 1.270 24 H -0.284 1.284 25 H -0.256 1.256 26 C 0.218 3.782 27 N -0.476 5.476 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.029 0.971 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.615 8.596 -11.129 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.026 3.974 3 C -0.201 4.201 4 C -0.070 4.070 5 C -0.130 4.130 6 C -0.063 4.063 7 C -0.163 4.163 8 C -0.004 4.004 9 C -0.730 4.730 10 S 2.776 3.224 11 O -0.948 6.948 12 O -0.965 6.965 13 N -0.805 5.805 14 C -0.054 4.054 15 C 0.127 3.873 16 H 0.073 0.927 17 C -0.201 4.201 18 C -0.554 4.554 19 H 0.100 0.900 20 C -0.126 4.126 21 N -0.527 5.527 22 Si 0.681 3.319 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.180 1.180 26 C 0.096 3.904 27 N -0.186 5.186 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.164 0.836 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.899 7.217 -11.648 13.833 hybrid contribution 1.814 1.074 0.510 2.169 sum -0.085 8.291 -11.138 13.885 Atomic orbital electron populations 1.20873 0.88359 1.04122 1.03449 1.21531 0.97310 0.87924 0.90637 1.21668 0.94962 0.99216 1.04249 1.21432 0.94582 0.96891 0.94052 1.18817 0.94916 0.94144 1.05126 1.21187 0.92812 0.98502 0.93825 1.21021 1.00649 0.92318 1.02327 1.20901 0.92256 0.99991 0.87302 1.30963 1.06300 1.19467 1.16308 1.02171 0.73246 0.73295 0.73701 1.93519 1.58654 1.86736 1.55870 1.93515 1.63095 1.52756 1.87136 1.57431 1.24690 1.71014 1.27382 1.21592 0.81662 0.98287 1.03867 1.19140 0.92572 0.91688 0.83918 0.92695 1.22138 1.00952 0.97656 0.99364 1.21222 1.08288 1.15222 1.10684 0.90016 1.24971 0.97739 0.95115 0.94785 1.69889 1.30853 1.37568 1.14434 0.87176 0.83416 0.83182 0.78104 1.19571 1.20961 1.18040 1.17843 0.88782 0.91202 0.92593 1.67780 1.07659 1.28920 1.14194 0.89868 0.89597 0.90409 0.84417 0.84314 0.84812 0.84713 0.83565 0.94383 0.90948 0.89414 0.95217 0.92723 0.92797 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.14 36.00 0.37 -0.80 16 2 C 0.18 2.55 6.78 -82.50 -0.56 1.99 16 3 C -0.18 -2.15 9.64 -39.77 -0.38 -2.53 16 4 C -0.04 -0.54 9.90 -39.22 -0.39 -0.93 16 5 C -0.13 -2.01 5.74 -106.80 -0.61 -2.62 16 6 C -0.04 -0.60 9.77 -39.51 -0.39 -0.99 16 7 C -0.14 -2.09 9.96 -39.92 -0.40 -2.49 16 8 C 0.02 0.29 9.47 -39.94 -0.38 -0.09 16 9 C -0.65 -12.94 5.91 -39.47 -0.23 -13.17 16 10 S 2.69 58.18 5.25 -107.50 -0.56 57.62 16 11 O -0.96 -21.25 16.40 -57.17 -0.94 -22.19 16 12 O -0.97 -22.41 15.50 -57.17 -0.89 -23.29 16 13 N -0.97 -21.29 3.06 -115.85 -0.35 -21.65 16 14 C 0.09 1.78 9.33 59.85 0.56 2.34 16 15 C 0.23 5.55 2.28 -69.08 -0.16 5.40 16 16 H 0.06 1.39 4.06 -51.93 -0.21 1.18 16 17 C -0.14 -3.05 9.10 37.16 0.34 -2.71 16 18 C -0.51 -13.90 8.72 -34.44 -0.30 -14.20 16 19 H 0.08 2.37 6.82 -52.49 -0.36 2.01 16 20 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 21 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 22 Si 0.86 21.12 26.99 -169.99 -4.59 16.53 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.26 -6.13 6.82 56.52 0.39 -5.74 16 26 C 0.22 4.15 6.56 -84.86 -0.56 3.59 16 27 N -0.48 -8.63 6.20 -7.23 -0.04 -8.68 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.09 0.97 7.44 -51.93 -0.39 0.58 16 30 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 31 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 34 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.15 2.44 7.26 -52.48 -0.38 2.06 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.44 6.56 -51.93 -0.34 1.10 16 38 H 0.09 1.62 4.12 -51.93 -0.21 1.41 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.05 1.10 7.84 -51.93 -0.41 0.69 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 352.45 15.07 5.31 5.31 Total: -1.00 -34.48 352.45 -9.73 -44.21 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.25 Total: 2.71 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -3.19 Total: -25.15 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.37 Total: -55.75 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -1.82 Total: -45.48 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.59 Total: 16.53 kcal Atomic # 16 Polarization: 58.18 SS G_CDS: -0.56 Total: 57.62 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.48 -9.73 -44.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084937726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.433 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds