Wall clock time and date at job start Tue Mar 31 2020 17:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36108 * 120.12483 * 2 1 4 4 C 1.39318 * 121.06572 * 179.97438 * 3 2 1 5 5 C 1.36170 * 120.86895 * 0.07020 * 4 3 2 6 6 S 1.76200 * 120.19238 * 179.97438 * 5 4 3 7 7 O 1.42100 * 106.40394 * 359.70131 * 6 5 4 8 8 O 1.42099 * 106.40327 * 132.62287 * 6 5 4 9 9 N 1.65603 * 107.21632 * 246.16358 * 6 5 4 10 10 C 1.46497 * 119.99859 * 263.01866 * 9 6 5 11 11 C 1.46500 * 119.99943 * 83.01770 * 9 6 5 12 12 H 1.09002 * 109.47408 * 354.44737 * 11 9 6 13 13 C 1.53003 * 109.47246 * 114.44611 * 11 9 6 14 14 C 1.50704 * 109.47080 * 234.44612 * 11 9 6 15 15 H 1.07995 * 119.99919 * 359.97438 * 14 11 9 16 16 C 1.37878 * 119.99751 * 179.97438 * 14 11 9 17 17 N 1.31516 * 120.00258 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 119.99776 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.47026 * 90.00171 * 18 16 14 20 20 H 1.48495 * 109.47109 * 210.00484 * 18 16 14 21 21 H 1.48498 * 109.47365 * 330.00690 * 18 16 14 22 22 C 1.40389 * 119.61525 * 359.91110 * 5 4 3 23 23 C 1.40774 * 121.38660 * 180.02562 * 22 5 4 24 24 C 1.36568 * 118.15513 * 180.02562 * 23 22 5 25 25 C 1.39340 * 119.93828 * 359.97438 * 24 23 22 26 26 N 1.31080 * 121.75180 * 0.02562 * 25 24 23 27 27 C 1.33694 * 121.32278 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47067 * 270.01644 * 1 2 3 29 29 H 1.09003 * 109.47137 * 30.01743 * 1 2 3 30 30 H 1.09002 * 109.47240 * 150.02230 * 1 2 3 31 31 H 1.08000 * 119.46968 * 359.97438 * 3 2 1 32 32 H 1.08005 * 119.56341 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.47380 * 90.00503 * 10 9 6 34 34 H 1.09004 * 109.47077 * 210.00006 * 10 9 6 35 35 H 1.08998 * 109.47173 * 329.99899 * 10 9 6 36 36 H 1.09010 * 109.46857 * 60.00030 * 13 11 9 37 37 H 1.08998 * 109.47656 * 179.97438 * 13 11 9 38 38 H 1.09000 * 109.47367 * 300.00679 * 13 11 9 39 39 H 0.96997 * 120.00005 * 180.02562 * 17 16 14 40 40 H 1.08009 * 120.92315 * 359.97438 * 23 22 5 41 41 H 1.08000 * 120.03274 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.12165 * 179.72377 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.1772 0.0000 4 6 3.5831 1.2001 0.0005 5 6 4.3009 0.0429 -0.0004 6 16 6.0622 0.0927 -0.0003 7 8 6.4248 1.4666 -0.0064 8 8 6.4893 -0.8195 1.0020 9 7 6.5701 -0.5314 -1.4477 10 6 6.9741 -1.9367 -1.5381 11 6 6.6156 0.3219 -2.6377 12 1 6.1893 1.2970 -2.4022 13 6 8.0682 0.4952 -3.0859 14 6 5.8209 -0.3193 -3.7462 15 1 5.3315 -1.2677 -3.5809 16 6 5.7189 0.3049 -4.9713 17 7 6.3154 1.4596 -5.1728 18 14 4.7345 -0.4901 -6.3455 19 1 3.3239 -0.0318 -6.2730 20 1 5.3139 -0.1036 -7.6570 21 1 4.7832 -1.9670 -6.1988 22 6 3.6294 -1.1899 0.0001 23 6 4.3341 -2.4086 -0.0003 24 6 3.6143 -3.5692 -0.0004 25 6 2.2216 -3.5238 0.0004 26 7 1.5685 -2.3873 0.0007 27 6 2.2125 -1.2156 0.0009 28 1 -0.3633 0.0003 1.0277 29 1 -0.3633 0.8899 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6435 2.1087 -0.0004 32 1 4.1005 2.1482 0.0009 33 1 6.1070 -2.5487 -1.7865 34 1 7.7315 -2.0478 -2.3141 35 1 7.3843 -2.2591 -0.5811 36 1 8.4945 -0.4801 -3.3216 37 1 8.1020 1.1296 -3.9716 38 1 8.6430 0.9588 -2.2842 39 1 6.2433 1.8989 -6.0346 40 1 5.4140 -2.4253 -0.0013 41 1 4.1240 -4.5214 -0.0011 42 1 1.6655 -4.4496 -0.0043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103496531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:50 Heat of formation + Delta-G solvation = -11.630170 kcal Electronic energy + Delta-G solvation = -27848.407979 eV Core-core repulsion = 24113.795611 eV Total energy + Delta-G solvation = -3734.612369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.84818 -37.36436 -36.77759 -36.32293 -35.40863 -34.23246 -32.68827 -31.23028 -30.57525 -29.18002 -27.21911 -25.66962 -25.24495 -24.10527 -23.69595 -21.60287 -20.79840 -18.74535 -17.98086 -17.38872 -17.26635 -16.72437 -16.32655 -15.53822 -15.32782 -14.68267 -14.61979 -14.45941 -14.35526 -13.59800 -13.45848 -13.32763 -13.07134 -12.99859 -12.85104 -12.27769 -12.15247 -12.04763 -11.82285 -11.72879 -11.53639 -11.43574 -11.30026 -11.23331 -11.04801 -10.92973 -10.90714 -10.52665 -10.33151 -10.30615 -10.08824 -9.42677 -9.27789 -8.74971 -8.54040 -8.37276 -8.03327 -6.14538 -4.22623 0.16854 0.87099 0.92086 1.83817 2.81561 3.21625 3.28989 3.30821 3.50935 3.99291 4.19851 4.26618 4.32159 4.55541 4.64179 4.75224 4.88085 5.00091 5.14053 5.16442 5.34380 5.34912 5.41832 5.55426 5.57718 5.71393 5.79250 5.87180 5.98935 6.06498 6.15981 6.19579 6.23009 6.33765 6.45796 6.55225 6.77184 6.85102 6.85431 7.02993 7.35102 7.56403 7.71087 7.87566 7.98703 8.19812 8.80230 9.44104 10.90699 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.010345 B = 0.005955 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.078819 B = 4700.569851 C = 5498.251351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.010 4.010 3 C -0.133 4.133 4 C 0.013 3.987 5 C -0.655 4.655 6 S 2.684 3.316 7 O -0.957 6.957 8 O -0.975 6.975 9 N -0.978 5.978 10 C 0.090 3.910 11 C 0.271 3.729 12 H 0.055 0.945 13 C -0.146 4.146 14 C -0.525 4.525 15 H 0.062 0.938 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.013 4.013 23 C -0.082 4.082 24 C -0.157 4.157 25 C 0.120 3.880 26 N -0.466 5.466 27 C 0.108 3.892 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.149 0.851 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.094 0.906 38 H 0.016 0.984 39 H 0.264 0.736 40 H 0.153 0.847 41 H 0.142 0.858 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.872 -5.976 9.453 13.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.011 4.011 3 C -0.154 4.154 4 C -0.006 4.006 5 C -0.740 4.740 6 S 2.774 3.226 7 O -0.947 6.947 8 O -0.965 6.965 9 N -0.818 5.818 10 C -0.055 4.055 11 C 0.169 3.831 12 H 0.072 0.928 13 C -0.206 4.206 14 C -0.564 4.564 15 H 0.081 0.919 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.016 4.016 23 C -0.108 4.108 24 C -0.177 4.177 25 C -0.053 4.053 26 N -0.174 5.174 27 C -0.014 4.014 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.156 0.844 32 H 0.166 0.834 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.113 0.887 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.171 0.829 41 H 0.159 0.841 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.274 -5.409 9.974 13.478 hybrid contribution -0.339 -0.589 -1.290 1.458 sum -7.613 -5.998 8.683 13.013 Atomic orbital electron populations 1.20794 0.89775 1.03601 1.02757 1.19827 0.96764 0.90984 0.93510 1.20930 0.94141 0.98027 1.02298 1.20882 0.94400 0.97689 0.87672 1.31086 1.28283 0.98009 1.16645 1.02170 0.73592 0.73634 0.73240 1.93555 1.81399 1.33156 1.86617 1.93507 1.80695 1.64870 1.57397 1.57397 1.78181 1.19434 1.26824 1.21490 1.00530 0.81337 1.02190 1.18743 0.94609 0.89117 0.80668 0.92769 1.22083 0.96441 1.00514 1.01555 1.21336 1.31702 1.07088 0.96308 0.91938 1.24891 0.95506 0.94871 0.98400 1.69870 1.42835 1.15481 1.24266 0.86561 0.80192 0.79684 0.81385 1.20689 1.21046 1.19885 1.18023 0.93990 0.92444 0.97105 1.22091 1.02022 0.91742 0.94952 1.21870 0.95511 0.99352 1.00982 1.22927 0.91852 0.96133 0.94395 1.67941 1.39814 0.97645 1.11956 1.18663 0.89674 0.92289 1.00815 0.90588 0.91143 0.89999 0.84378 0.83362 0.93409 0.89782 0.91623 0.94745 0.88719 0.96508 0.92579 0.82928 0.84051 0.82275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.80 36.01 0.35 -0.93 16 2 C -0.01 -0.15 5.89 -104.52 -0.62 -0.76 16 3 C -0.13 -1.93 9.58 -39.95 -0.38 -2.31 16 4 C 0.01 0.22 9.48 -39.92 -0.38 -0.16 16 5 C -0.65 -12.17 5.91 -39.52 -0.23 -12.41 16 6 S 2.68 53.01 5.06 -107.50 -0.54 52.47 16 7 O -0.96 -20.90 15.82 -57.17 -0.90 -21.80 16 8 O -0.97 -19.21 14.65 -57.17 -0.84 -20.04 16 9 N -0.98 -19.92 3.06 -115.85 -0.36 -20.27 16 10 C 0.09 1.55 7.91 59.85 0.47 2.02 16 11 C 0.27 6.48 2.54 -69.08 -0.18 6.30 16 12 H 0.05 1.42 7.22 -51.93 -0.38 1.04 16 13 C -0.15 -3.39 9.04 37.16 0.34 -3.05 16 14 C -0.52 -13.39 8.31 -34.44 -0.29 -13.68 16 15 H 0.06 1.58 7.34 -52.49 -0.39 1.20 16 16 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 17 N -0.89 -24.01 11.32 55.43 0.63 -23.38 16 18 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 C -0.01 -0.23 5.74 -106.80 -0.61 -0.84 16 23 C -0.08 -1.33 8.11 -39.23 -0.32 -1.65 16 24 C -0.16 -2.04 10.03 -39.77 -0.40 -2.43 16 25 C 0.12 1.53 11.15 -17.46 -0.19 1.33 16 26 N -0.47 -7.16 9.42 -10.97 -0.10 -7.26 16 27 C 0.11 1.82 6.58 -84.86 -0.56 1.27 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.08 0.98 7.56 -51.93 -0.39 0.59 16 31 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 32 H 0.15 2.30 7.28 -52.48 -0.38 1.92 16 33 H 0.05 0.77 6.60 -51.93 -0.34 0.42 16 34 H 0.08 1.41 6.73 -51.93 -0.35 1.06 16 35 H 0.07 0.98 6.68 -51.93 -0.35 0.63 16 36 H 0.03 0.73 6.89 -51.92 -0.36 0.38 16 37 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.15 2.42 3.09 -52.48 -0.16 2.26 16 41 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 347.86 15.07 5.24 5.24 Total: -1.00 -31.66 347.86 -10.06 -41.72 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.08 Total: 3.47 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -3.09 Total: -25.68 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.17 Total: -50.91 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -1.74 Total: -41.85 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 53.01 SS G_CDS: -0.54 Total: 52.47 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.66 -10.06 -41.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103496531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.088 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds