Wall clock time and date at job start Tue Mar 31 2020 18:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47026 * 2 1 4 4 C 1.50697 * 109.47029 * 120.00456 * 2 1 3 5 5 H 1.08001 * 119.99620 * 120.00159 * 4 2 1 6 6 C 1.37875 * 120.00234 * 299.99893 * 4 2 1 7 7 N 1.31514 * 119.99844 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00039 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47078 * 90.00080 * 8 6 4 10 10 H 1.48500 * 109.46950 * 209.99903 * 8 6 4 11 11 H 1.48496 * 109.47016 * 329.99889 * 8 6 4 12 12 N 1.46500 * 109.46762 * 240.00743 * 2 1 3 13 13 C 1.46505 * 119.99952 * 299.99561 * 12 2 1 14 14 C 1.34773 * 120.00391 * 120.00074 * 12 2 1 15 15 O 1.21606 * 119.99828 * 4.87254 * 14 12 2 16 16 C 1.47483 * 120.00157 * 184.59225 * 14 12 2 17 17 C 1.39806 * 119.95234 * 320.48639 * 16 14 12 18 18 C 1.37716 * 119.79262 * 179.65338 * 17 16 14 19 19 C 1.38922 * 120.12568 * 0.57772 * 18 17 16 20 20 C 1.39872 * 120.64846 * 359.83861 * 19 18 17 21 21 C 1.38565 * 119.19308 * 359.78332 * 20 19 18 22 22 N 1.39331 * 121.50367 * 179.53689 * 20 19 18 23 23 C 1.33102 * 125.83543 * 22.43385 * 22 20 19 24 24 O 1.21299 * 118.27149 * 179.08343 * 23 22 20 25 25 C 1.50370 * 123.45902 * 359.10253 * 23 22 20 26 26 H 1.08995 * 109.55403 * 205.01766 * 25 23 22 27 27 C 1.52998 * 109.63290 * 84.76713 * 25 23 22 28 28 S 1.76480 * 120.05752 * 179.97438 * 19 18 17 29 29 H 1.08996 * 109.46904 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46506 * 299.99611 * 1 2 3 31 31 H 1.08998 * 109.46972 * 59.99094 * 1 2 3 32 32 H 0.96998 * 119.99924 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.47012 * 265.91281 * 13 12 2 34 34 H 1.09003 * 109.46799 * 25.91105 * 13 12 2 35 35 H 1.08999 * 109.46814 * 145.90779 * 13 12 2 36 36 H 1.07990 * 120.10102 * 359.93460 * 17 16 14 37 37 H 1.07999 * 119.93041 * 180.25321 * 18 17 16 38 38 H 1.07997 * 119.93300 * 180.15077 * 21 20 19 39 39 H 0.97000 * 117.08209 * 202.43014 * 22 20 19 40 40 H 1.08999 * 109.47910 * 300.45290 * 27 25 23 41 41 H 1.09002 * 109.47154 * 60.45625 * 27 25 23 42 42 H 1.08996 * 109.47275 * 180.45014 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9437 0.8300 2.6034 8 14 2.3226 -1.1199 4.0078 9 1 3.6306 -0.5444 4.4118 10 1 1.3445 -0.9494 5.1122 11 1 2.4881 -2.5657 3.7119 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7931 -0.0355 -2.0834 15 8 3.1602 1.0997 -1.8483 16 6 3.2009 -0.6977 -3.3365 17 6 3.5533 -2.0506 -3.3284 18 6 3.9267 -2.6675 -4.5017 19 6 3.9648 -1.9452 -5.6878 20 6 3.6231 -0.5890 -5.7080 21 6 3.2400 0.0291 -4.5285 22 7 3.6643 0.1548 -6.8854 23 6 3.5991 -0.3371 -8.1205 24 8 3.6307 0.4404 -9.0510 25 6 3.4880 -1.8059 -8.4232 26 1 3.8850 -2.0043 -9.4187 27 6 2.0203 -2.2336 -8.3626 28 16 4.4442 -2.7373 -7.1902 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 0.7091 1.1611 3.4845 33 1 2.4520 -2.7362 -1.0357 34 1 0.7253 -2.3191 -0.9231 35 1 1.5525 -2.2673 -2.4984 36 1 3.5283 -2.6113 -2.4058 37 1 4.1953 -3.7135 -4.4987 38 1 2.9713 1.0751 -4.5308 39 1 3.7479 1.1171 -6.7972 40 1 1.6235 -2.0314 -7.3677 41 1 1.4480 -1.6742 -9.1026 42 1 1.9436 -3.3000 -8.5745 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264123976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:22 Heat of formation + Delta-G solvation = -47.976045 kcal Electronic energy + Delta-G solvation = -26231.840636 eV Core-core repulsion = 22495.652192 eV Total energy + Delta-G solvation = -3736.188444 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.04864 -41.15669 -39.50394 -37.22360 -36.54598 -34.80489 -34.20894 -32.58558 -31.57687 -30.35811 -27.84364 -27.29722 -26.46982 -25.29545 -24.21366 -22.98269 -21.67915 -20.35464 -19.19350 -18.99677 -18.48145 -18.40523 -17.59189 -17.15101 -16.79486 -16.38495 -16.30150 -16.00882 -15.65320 -15.45181 -14.97052 -14.81156 -14.56844 -14.42088 -14.31610 -13.93709 -13.59760 -13.48154 -13.22506 -13.11629 -12.95158 -12.82809 -12.68807 -12.56797 -12.37510 -12.16028 -12.09983 -12.03812 -11.85241 -11.30123 -11.17868 -10.79480 -10.66268 -10.50080 -9.56491 -9.38021 -8.60191 -8.13771 -6.30330 -0.53283 -0.00868 0.20291 0.89101 1.29685 1.43608 1.45128 1.54641 1.60008 1.76844 2.23095 2.44014 2.57743 2.86188 3.14921 3.47648 3.54856 3.66063 3.91097 4.01266 4.04609 4.22857 4.42411 4.55754 4.60504 4.64127 4.66911 4.69508 4.79143 4.88484 4.95191 5.03627 5.05593 5.08220 5.20808 5.26073 5.43765 5.46311 5.62265 5.66308 5.89738 6.01679 6.15515 6.54295 6.73490 6.77131 7.24085 7.43465 8.90690 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.025273 B = 0.002718 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.656780 B =10297.817890 C =10708.181684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.261 3.739 3 H 0.009 0.991 4 C -0.537 4.537 5 H 0.065 0.935 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.284 1.284 10 H -0.282 1.282 11 H -0.258 1.258 12 N -0.587 5.587 13 C 0.074 3.926 14 C 0.536 3.464 15 O -0.599 6.599 16 C -0.094 4.094 17 C -0.090 4.090 18 C -0.051 4.051 19 C -0.121 4.121 20 C 0.150 3.850 21 C -0.094 4.094 22 N -0.650 5.650 23 C 0.527 3.473 24 O -0.551 6.551 25 C -0.097 4.097 26 H 0.168 0.832 27 C -0.137 4.137 28 S -0.054 6.054 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.020 0.980 32 H 0.264 0.736 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.162 0.838 37 H 0.177 0.823 38 H 0.131 0.869 39 H 0.417 0.583 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.951 -13.680 -20.409 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.159 3.841 3 H 0.027 0.973 4 C -0.575 4.575 5 H 0.084 0.916 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.210 1.210 10 H -0.208 1.208 11 H -0.181 1.181 12 N -0.316 5.316 13 C -0.068 4.068 14 C 0.324 3.676 15 O -0.482 6.482 16 C -0.100 4.100 17 C -0.111 4.111 18 C -0.074 4.074 19 C -0.236 4.236 20 C 0.049 3.951 21 C -0.116 4.116 22 N -0.293 5.293 23 C 0.313 3.687 24 O -0.430 6.430 25 C -0.228 4.228 26 H 0.185 0.815 27 C -0.196 4.196 28 S 0.188 5.812 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.179 0.821 37 H 0.195 0.805 38 H 0.149 0.851 39 H 0.256 0.744 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.786 -13.774 -21.031 25.423 hybrid contribution -0.586 2.087 1.581 2.683 sum 3.201 -11.687 -19.449 22.915 Atomic orbital electron populations 1.21902 0.96919 1.00413 1.00023 1.18600 0.91700 0.92247 0.81505 0.97304 1.21580 1.31896 1.13161 0.90899 0.91641 1.25736 0.95053 0.95633 1.02065 1.70021 1.37359 1.23964 1.24427 0.85461 0.77639 0.79428 0.78538 1.21045 1.20797 1.18146 1.48157 1.47958 1.13538 1.21941 1.22223 1.02013 0.80175 1.02340 1.18823 0.78837 0.85508 0.84389 1.90740 1.57385 1.21195 1.78859 1.19688 1.02949 0.95420 0.91942 1.21833 0.96925 0.92064 1.00293 1.21031 0.96523 1.01122 0.88720 1.21867 1.07665 0.94018 1.00045 1.17212 1.01477 0.90831 0.85573 1.20744 1.00369 1.00426 0.90090 1.43066 1.70096 1.12396 1.03749 1.20330 0.74785 0.91889 0.81679 1.90817 1.49994 1.59304 1.42846 1.23809 1.03602 0.90920 1.04452 0.81453 1.22046 0.89492 1.04860 1.03229 1.85751 1.57061 1.44082 0.94268 0.92961 0.91299 0.96140 0.92679 0.91043 0.90782 0.88893 0.82100 0.80543 0.85105 0.74447 0.92489 0.90313 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 8.96 71.98 0.64 -5.62 16 2 C 0.26 13.24 2.63 44.25 0.12 13.35 16 3 H 0.01 0.55 6.91 -2.39 -0.02 0.53 16 4 C -0.54 -28.26 8.37 25.60 0.21 -28.05 16 5 H 0.07 3.29 7.65 -2.91 -0.02 3.27 16 6 C 0.01 0.79 5.30 84.65 0.45 1.23 16 7 N -0.92 -52.20 11.32 21.45 0.24 -51.96 16 8 Si 0.96 41.96 29.54 68.60 2.03 43.99 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 12 N -0.59 -23.78 2.75 -830.59 -2.29 -26.07 16 13 C 0.07 2.11 8.10 127.77 1.03 3.14 16 14 C 0.54 21.83 7.33 86.68 0.64 22.47 16 15 O -0.60 -30.51 16.24 -4.05 -0.07 -30.58 16 16 C -0.09 -2.74 5.22 -20.12 -0.11 -2.85 16 17 C -0.09 -1.89 7.55 22.53 0.17 -1.72 16 18 C -0.05 -0.82 9.77 22.31 0.22 -0.60 16 19 C -0.12 -2.19 5.91 22.83 0.13 -2.06 16 20 C 0.15 3.21 6.54 38.42 0.25 3.46 16 21 C -0.09 -2.45 9.39 22.69 0.21 -2.24 16 22 N -0.65 -13.29 5.09 -305.84 -1.56 -14.85 16 23 C 0.53 10.87 6.86 87.81 0.60 11.47 16 24 O -0.55 -14.83 17.77 -3.09 -0.05 -14.89 16 25 C -0.10 -1.36 3.33 29.74 0.10 -1.26 16 26 H 0.17 1.81 8.14 -2.39 -0.02 1.79 16 27 C -0.14 -1.50 9.16 71.98 0.66 -0.84 16 28 S -0.05 -0.78 21.65 -56.49 -1.22 -2.00 16 29 H 0.05 2.18 6.66 -2.39 -0.02 2.16 16 30 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 31 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.07 1.78 6.89 -2.39 -0.02 1.77 16 34 H 0.07 2.16 6.43 -2.39 -0.02 2.15 16 35 H 0.09 2.01 5.82 -2.39 -0.01 2.00 16 36 H 0.16 3.00 5.33 -2.92 -0.02 2.99 16 37 H 0.18 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.13 3.61 8.05 -2.91 -0.02 3.58 16 39 H 0.42 8.10 8.58 -92.71 -0.80 7.30 16 40 H 0.06 0.76 8.07 -2.39 -0.02 0.74 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -72.71 355.46 2.70 -70.01 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.28 Total: 16.46 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 5.34 Total: 9.88 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -3.60 Total: -92.87 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -0.12 Total: -45.47 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -1.22 Total: -2.00 kcal Total: -72.71 2.70 -70.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264123976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.036 kcal (2) G-P(sol) polarization free energy of solvation -72.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds