Wall clock time and date at job start Tue Mar 31 2020 18:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46826 * 2 1 4 4 N 1.46504 * 109.46728 * 184.90394 * 3 2 1 5 5 C 1.36908 * 119.99621 * 95.82365 * 4 3 2 6 6 H 1.07998 * 119.99895 * 216.59412 * 5 4 3 7 7 C 1.39013 * 120.00437 * 36.59213 * 5 4 3 8 8 N 1.31383 * 120.00325 * 210.81540 * 7 5 4 9 9 Si 1.86803 * 119.99465 * 30.81724 * 7 5 4 10 10 H 1.48498 * 109.47177 * 95.49407 * 9 7 5 11 11 H 1.48499 * 109.46741 * 215.49025 * 9 7 5 12 12 H 1.48495 * 109.47069 * 335.48784 * 9 7 5 13 13 C 1.34775 * 120.00267 * 275.82307 * 4 3 2 14 14 O 1.21646 * 119.99918 * 3.54309 * 13 4 3 15 15 C 1.47377 * 119.99965 * 183.54568 * 13 4 3 16 16 C 1.39878 * 119.95460 * 25.77727 * 15 13 4 17 17 C 1.37692 * 119.78774 * 179.97438 * 16 15 13 18 18 C 1.38944 * 120.13312 * 359.96387 * 17 16 15 19 19 C 1.39891 * 120.65358 * 0.16478 * 18 17 16 20 20 C 1.38545 * 119.20207 * 359.54743 * 19 18 17 21 21 N 1.39328 * 121.50281 * 179.70637 * 19 18 17 22 22 C 1.33094 * 125.85128 * 22.29478 * 21 19 18 23 23 O 1.21304 * 118.26531 * 179.14394 * 22 21 19 24 24 C 1.50357 * 123.46925 * 359.12109 * 22 21 19 25 25 H 1.08997 * 109.55216 * 84.87891 * 24 22 21 26 26 C 1.53005 * 109.55243 * 205.07129 * 24 22 21 27 27 S 1.76482 * 120.05746 * 180.32538 * 18 17 16 28 28 H 1.09001 * 109.47220 * 55.13490 * 1 2 3 29 29 H 1.09005 * 109.46654 * 175.13444 * 1 2 3 30 30 H 1.08997 * 109.46971 * 295.13174 * 1 2 3 31 31 H 1.09001 * 109.47127 * 120.00367 * 2 1 3 32 32 H 1.09006 * 109.47043 * 240.00244 * 2 1 3 33 33 H 1.09001 * 109.47252 * 304.90551 * 3 2 1 34 34 H 1.09001 * 109.46909 * 64.91130 * 3 2 1 35 35 H 0.96993 * 120.00364 * 179.97438 * 8 7 5 36 36 H 1.07993 * 120.10870 * 359.93716 * 16 15 13 37 37 H 1.07997 * 119.93086 * 179.97438 * 17 16 15 38 38 H 1.07995 * 119.93638 * 180.40506 * 20 19 18 39 39 H 0.97004 * 117.07119 * 202.32944 * 21 19 18 40 40 H 1.09004 * 109.46690 * 60.00311 * 26 24 22 41 41 H 1.09000 * 109.46921 * 179.97438 * 26 24 22 42 42 H 1.08999 * 109.47360 * 300.00151 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5002 1.4442 -0.1181 5 6 4.0876 1.5988 -1.3451 6 1 4.9923 1.0590 -1.5826 7 6 3.5194 2.4507 -2.2853 8 7 3.6473 2.1931 -3.5673 9 14 2.5740 3.9616 -1.7259 10 1 3.4750 5.1419 -1.7385 11 1 1.4330 4.2001 -2.6458 12 1 2.0626 3.7437 -0.3489 13 6 4.2654 1.2935 0.9811 14 8 3.7446 1.0917 2.0618 15 6 5.7331 1.3733 0.8738 16 6 6.3188 2.1055 -0.1641 17 6 7.6904 2.1782 -0.2608 18 6 8.4907 1.5271 0.6699 19 6 7.9177 0.7893 1.7112 20 6 6.5376 0.7213 1.8117 21 7 8.7033 0.1246 2.6505 22 6 9.9669 0.4123 2.9535 23 8 10.5175 -0.2491 3.8084 24 6 10.7483 1.5134 2.2919 25 1 10.5438 2.4587 2.7947 26 6 12.2439 1.2019 2.3760 27 16 10.2484 1.6287 0.5491 28 1 -0.3634 0.5875 -0.8432 29 1 -0.3633 -1.0240 -0.0872 30 1 -0.3633 0.4364 0.9304 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.6067 1.9811 -0.8428 34 1 1.7502 1.9303 0.9307 35 1 3.2506 2.7873 -4.2233 36 1 5.6972 2.6117 -0.8878 37 1 8.1450 2.7426 -1.0615 38 1 6.0827 0.1604 2.6148 39 1 8.2925 -0.6145 3.1259 40 1 12.4474 0.2582 1.8698 41 1 12.8089 2.0007 1.8956 42 1 12.5407 1.1246 3.4219 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299023811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:15 Heat of formation + Delta-G solvation = -41.355876 kcal Electronic energy + Delta-G solvation = -26437.779807 eV Core-core repulsion = 22701.878435 eV Total energy + Delta-G solvation = -3735.901372 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.92041 -41.09908 -39.47368 -37.18469 -36.40438 -34.75599 -34.03526 -33.60025 -32.20254 -30.76820 -27.70375 -27.24795 -26.41635 -24.23855 -23.98235 -22.71668 -21.89385 -20.85576 -19.69354 -18.81179 -18.67802 -18.25493 -17.54288 -17.39409 -17.03332 -16.16193 -16.08861 -15.84912 -15.68432 -15.30405 -15.19830 -14.85724 -14.76381 -14.45268 -14.42130 -14.01800 -13.82533 -13.51403 -13.25374 -13.11237 -13.02290 -12.74846 -12.59640 -12.52704 -12.43575 -12.10668 -11.89559 -11.73626 -11.70242 -11.47426 -11.30810 -11.10449 -10.62491 -10.48560 -9.76865 -9.40250 -8.60700 -8.52880 -6.04823 -0.43083 0.09839 0.25362 0.96035 1.26182 1.38345 1.41201 1.47010 1.68216 1.87374 2.20622 2.50419 2.66088 2.91120 3.05015 3.58629 3.70149 3.92311 3.94803 4.05815 4.17275 4.22406 4.29346 4.41608 4.46815 4.60073 4.67615 4.70104 4.71362 4.75255 4.80802 4.95582 5.12537 5.12584 5.24010 5.27270 5.28356 5.33153 5.47376 5.50961 5.66545 5.98483 6.03348 6.24506 6.60994 6.90861 7.35513 7.72802 8.53196 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.017779 B = 0.003526 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.515120 B = 7938.006655 C = 9044.814124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C 0.110 3.890 4 N -0.451 5.451 5 C -0.356 4.356 6 H 0.095 0.905 7 C 0.052 3.948 8 N -0.864 5.864 9 Si 0.896 3.104 10 H -0.271 1.271 11 H -0.273 1.273 12 H -0.252 1.252 13 C 0.500 3.500 14 O -0.619 6.619 15 C -0.088 4.088 16 C -0.081 4.081 17 C -0.074 4.074 18 C -0.126 4.126 19 C 0.138 3.862 20 C -0.094 4.094 21 N -0.648 5.648 22 C 0.523 3.477 23 O -0.544 6.544 24 C -0.098 4.098 25 H 0.143 0.857 26 C -0.116 4.116 27 S -0.067 6.067 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.284 0.716 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.137 0.863 39 H 0.417 0.583 40 H 0.065 0.935 41 H 0.099 0.901 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.946 1.405 5.352 10.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C -0.013 4.013 4 N -0.168 5.168 5 C -0.482 4.482 6 H 0.112 0.888 7 C -0.157 4.157 8 N -0.497 5.497 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.198 1.198 12 H -0.176 1.176 13 C 0.291 3.709 14 O -0.507 6.507 15 C -0.093 4.093 16 C -0.102 4.102 17 C -0.097 4.097 18 C -0.241 4.241 19 C 0.038 3.962 20 C -0.117 4.117 21 N -0.291 5.291 22 C 0.309 3.691 23 O -0.422 6.422 24 C -0.229 4.229 25 H 0.161 0.839 26 C -0.175 4.175 27 S 0.175 5.825 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.181 0.819 37 H 0.174 0.826 38 H 0.155 0.845 39 H 0.256 0.744 40 H 0.084 0.916 41 H 0.117 0.883 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.879 1.291 5.046 11.168 hybrid contribution -1.825 0.125 1.016 2.092 sum 8.054 1.415 6.062 10.179 Atomic orbital electron populations 1.21671 0.93275 1.02736 1.02147 1.21731 0.97536 0.96178 1.01223 1.21856 0.81085 0.97772 1.00590 1.43713 1.04874 1.62020 1.06189 1.18973 1.13466 1.27464 0.88324 0.88803 1.25661 0.96644 0.99161 0.94235 1.69923 1.41957 1.36044 1.01799 0.86657 0.79587 0.81612 0.80196 1.19672 1.19788 1.17627 1.18467 0.87495 0.81579 0.83346 1.90623 1.75360 1.56470 1.28260 1.19753 0.92808 1.00022 0.96721 1.22481 0.94950 0.96353 0.96431 1.20980 0.92377 0.98034 0.98307 1.21788 0.98366 1.04714 0.99231 1.17165 0.89897 0.97674 0.91464 1.20808 0.90471 1.00911 0.99518 1.42999 1.12434 1.34684 1.38995 1.20317 0.80958 0.85649 0.82199 1.90777 1.67273 1.51254 1.32942 1.23659 1.01785 1.01260 0.96198 0.83897 1.21541 0.87549 1.03680 1.04710 1.85691 0.96172 1.92729 1.07939 0.92360 0.91031 0.92062 0.93038 0.92722 0.91396 0.92014 0.90606 0.81880 0.82571 0.84481 0.74444 0.91595 0.88268 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.91 71.98 0.71 -3.28 16 2 C -0.13 -4.73 6.22 30.60 0.19 -4.54 16 3 C 0.11 4.55 3.40 86.38 0.29 4.84 16 4 N -0.45 -20.35 2.17 -639.29 -1.39 -21.74 16 5 C -0.36 -16.68 6.38 84.09 0.54 -16.14 16 6 H 0.09 4.69 6.35 -2.91 -0.02 4.67 16 7 C 0.05 2.41 5.01 84.95 0.43 2.84 16 8 N -0.86 -42.65 13.96 21.67 0.30 -42.35 16 9 Si 0.90 36.54 26.21 68.60 1.80 38.33 16 10 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 11 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 12 H -0.25 -10.26 5.62 99.48 0.56 -9.70 16 13 C 0.50 22.57 7.40 86.65 0.64 23.21 16 14 O -0.62 -30.10 16.30 -4.18 -0.07 -30.17 16 15 C -0.09 -3.45 5.58 -20.12 -0.11 -3.56 16 16 C -0.08 -2.98 7.77 22.54 0.18 -2.81 16 17 C -0.07 -2.26 9.77 22.31 0.22 -2.04 16 18 C -0.13 -3.62 6.02 22.84 0.14 -3.48 16 19 C 0.14 4.09 6.54 38.42 0.25 4.35 16 20 C -0.09 -3.20 9.35 22.70 0.21 -2.99 16 21 N -0.65 -16.94 5.08 -305.86 -1.55 -18.50 16 22 C 0.52 13.38 7.38 87.81 0.65 14.03 16 23 O -0.54 -16.21 16.64 -3.10 -0.05 -16.26 16 24 C -0.10 -1.97 3.43 29.74 0.10 -1.87 16 25 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 26 C -0.12 -1.82 8.70 71.98 0.63 -1.19 16 27 S -0.07 -1.53 21.64 -56.49 -1.22 -2.75 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.99 8.13 -2.39 -0.02 1.98 16 32 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.07 2.78 4.35 -2.39 -0.01 2.77 16 34 H 0.06 2.58 7.61 -2.39 -0.02 2.56 16 35 H 0.28 13.04 8.31 -92.71 -0.77 12.27 16 36 H 0.16 6.60 5.08 -2.91 -0.01 6.58 16 37 H 0.16 4.05 8.06 -2.91 -0.02 4.03 16 38 H 0.14 4.53 7.83 -2.91 -0.02 4.50 16 39 H 0.42 9.95 8.58 -92.71 -0.80 9.15 16 40 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.39 7.80 -2.39 -0.02 1.37 16 Total: -1.00 -57.64 353.76 3.00 -54.64 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.12 Total: 31.45 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 5.06 Total: 7.35 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -2.64 Total: -82.59 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: -0.12 Total: -46.43 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 1.80 Total: 38.33 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -1.22 Total: -2.75 kcal Total: -57.64 3.00 -54.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299023811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.282 kcal (2) G-P(sol) polarization free energy of solvation -57.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds