Wall clock time and date at job start Tue Mar 31 2020 17:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47249 * 324.92855 * 3 2 1 5 5 C 1.36885 * 120.00004 * 90.00327 * 4 3 2 6 6 H 1.07998 * 120.00168 * 229.59422 * 5 4 3 7 7 C 1.39006 * 120.00265 * 49.58895 * 5 4 3 8 8 N 1.31402 * 119.99539 * 5.98023 * 7 5 4 9 9 Si 1.86799 * 120.00528 * 185.98135 * 7 5 4 10 10 H 1.48503 * 109.47154 * 180.02562 * 9 7 5 11 11 H 1.48507 * 109.46946 * 300.00206 * 9 7 5 12 12 H 1.48494 * 109.46922 * 60.00012 * 9 7 5 13 13 C 1.34781 * 119.99887 * 270.00349 * 4 3 2 14 14 O 1.21725 * 120.00206 * 356.14047 * 13 4 3 15 15 C 1.46561 * 119.99422 * 176.13709 * 13 4 3 16 16 S 1.76210 * 126.18319 * 6.40731 * 15 13 4 17 17 C 1.70923 * 90.37371 * 179.97438 * 16 15 13 18 18 C 1.50708 * 124.70050 * 180.02562 * 17 16 15 19 19 H 1.08996 * 109.52411 * 0.39005 * 18 17 16 20 20 C 1.53184 * 109.52064 * 240.26381 * 18 17 16 21 21 C 1.53174 * 109.03288 * 183.11399 * 20 18 17 22 22 C 1.53090 * 109.16522 * 56.98241 * 21 20 18 23 23 O 1.42902 * 109.41623 * 302.39176 * 22 21 20 24 24 C 1.42906 * 114.10073 * 61.15364 * 23 22 21 25 25 N 1.29377 * 110.59570 * 0.32145 * 17 16 15 26 26 C 1.30939 * 117.46835 * 359.74854 * 25 17 16 27 27 C 1.50700 * 123.04069 * 179.97438 * 26 25 17 28 28 H 4.40646 * 5.51376 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.46703 * 204.93429 * 3 2 1 30 30 H 1.08993 * 109.47107 * 84.93387 * 3 2 1 31 31 H 0.97003 * 119.99798 * 174.99358 * 8 7 5 32 32 H 1.09000 * 109.54032 * 302.98235 * 20 18 17 33 33 H 1.09002 * 109.54031 * 63.24592 * 20 18 17 34 34 H 1.08999 * 109.51736 * 176.88347 * 21 20 18 35 35 H 1.08994 * 109.52683 * 297.01283 * 21 20 18 36 36 H 1.08999 * 109.47997 * 62.36844 * 22 21 20 37 37 H 1.08997 * 109.48110 * 182.40607 * 22 21 20 38 38 H 1.08999 * 109.48149 * 178.86434 * 24 23 22 39 39 H 1.08998 * 109.47500 * 58.82671 * 24 23 22 40 40 H 1.08993 * 109.46934 * 270.04027 * 27 26 25 41 41 H 1.08997 * 109.47053 * 30.04076 * 27 26 25 42 42 H 1.09004 * 109.46790 * 150.03774 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.1296 0.7937 5 6 3.3637 -2.3387 0.1942 6 1 2.9577 -3.2413 0.6266 7 6 4.1185 -2.4051 -0.9712 8 7 4.7102 -1.3265 -1.4329 9 14 4.2917 -4.0273 -1.8809 10 1 5.1411 -3.8323 -3.0834 11 1 4.9230 -5.0312 -0.9870 12 1 2.9493 -4.5082 -2.2952 13 6 3.3594 -0.9788 2.1141 14 8 3.2236 0.1136 2.6337 15 6 3.7671 -2.1301 2.9241 16 16 4.1639 -3.7378 2.3216 17 6 4.4746 -4.2707 3.9156 18 6 4.9086 -5.6660 4.2845 19 1 4.9979 -6.2703 3.3818 20 6 3.8713 -6.2941 5.2205 21 6 4.3607 -7.6805 5.6502 22 6 5.7344 -7.5456 6.3123 23 8 6.6430 -6.9265 5.3994 24 6 6.2611 -5.6088 4.9994 25 7 4.2795 -3.3120 4.7622 26 6 3.9019 -2.1525 4.2851 27 6 3.6392 -0.9516 5.1567 28 1 -1.0498 -0.0002 0.0003 29 1 3.0089 0.9327 0.4332 30 1 3.0094 -0.0899 -1.0236 31 1 5.2954 -1.3868 -2.2042 32 1 3.7447 -5.6632 6.1003 33 1 2.9192 -6.3891 4.6983 34 1 3.6551 -8.1120 6.3600 35 1 4.4388 -8.3264 4.7757 36 1 5.6469 -6.9329 7.2095 37 1 6.1068 -8.5339 6.5817 38 1 7.0129 -5.2020 4.3230 39 1 6.1804 -4.9709 5.8795 40 1 2.5923 -0.9448 5.4599 41 1 4.2735 -0.9993 6.0419 42 1 3.8619 -0.0420 4.5988 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368633980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:08 Heat of formation + Delta-G solvation = -7.235393 kcal Electronic energy + Delta-G solvation = -26541.237084 eV Core-core repulsion = 22806.815287 eV Total energy + Delta-G solvation = -3734.421797 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22716 -40.52139 -39.65860 -37.05804 -35.25413 -34.40716 -33.35057 -33.11442 -31.30532 -29.79440 -28.10288 -26.64671 -26.20739 -25.91241 -23.22295 -22.56224 -21.36953 -20.55881 -19.47540 -18.77276 -18.22768 -17.57503 -17.16757 -16.97491 -16.63131 -16.34955 -16.15002 -15.76815 -15.67587 -15.42278 -14.89710 -14.77204 -14.34449 -14.16735 -13.96111 -13.83412 -13.54864 -13.52130 -13.43864 -13.23839 -13.02393 -12.80727 -12.46757 -12.21568 -12.11056 -12.02704 -11.85554 -11.49561 -11.34216 -11.33373 -11.02311 -10.64758 -10.54319 -10.26285 -10.13265 -9.71493 -9.33096 -8.50006 -6.43477 -0.52777 0.55038 1.03022 1.41026 1.44411 1.52234 1.58765 1.75827 1.97447 2.20284 2.40783 2.80959 2.90230 2.99690 3.21261 3.69643 3.77933 3.82361 3.87878 4.02942 4.17403 4.19737 4.32247 4.36279 4.48744 4.66432 4.70092 4.74716 4.76420 4.83804 4.88714 4.95437 4.99943 5.01564 5.06738 5.13085 5.13534 5.23798 5.34831 5.49667 5.86704 6.15410 6.20244 6.73443 6.82255 6.87109 7.28630 7.75113 8.53267 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.004323 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.918599 B = 6474.714504 C = 7798.419178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.224 4.224 3 C 0.219 3.781 4 N -0.440 5.440 5 C -0.360 4.360 6 H 0.101 0.899 7 C 0.031 3.969 8 N -0.876 5.876 9 Si 0.960 3.040 10 H -0.273 1.273 11 H -0.242 1.242 12 H -0.260 1.260 13 C 0.542 3.458 14 O -0.608 6.608 15 C -0.299 4.299 16 S 0.267 5.733 17 C -0.015 4.015 18 C -0.038 4.038 19 H 0.103 0.897 20 C -0.107 4.107 21 C -0.147 4.147 22 C 0.050 3.950 23 O -0.393 6.393 24 C 0.081 3.919 25 N -0.488 5.488 26 C 0.108 3.892 27 C -0.074 4.074 28 H 0.256 0.744 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.284 0.716 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.767 -12.425 7.855 14.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.225 4.225 3 C 0.097 3.903 4 N -0.157 5.157 5 C -0.492 4.492 6 H 0.117 0.883 7 C -0.177 4.177 8 N -0.510 5.510 9 Si 0.780 3.220 10 H -0.197 1.197 11 H -0.165 1.165 12 H -0.184 1.184 13 C 0.333 3.667 14 O -0.497 6.497 15 C -0.423 4.423 16 S 0.533 5.467 17 C -0.287 4.287 18 C -0.060 4.060 19 H 0.121 0.879 20 C -0.146 4.146 21 C -0.185 4.185 22 C -0.026 4.026 23 O -0.312 6.312 24 C 0.002 3.998 25 N -0.203 5.203 26 C -0.032 4.032 27 C -0.133 4.133 28 H 0.272 0.728 29 H 0.088 0.912 30 H 0.132 0.868 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.133 0.867 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.405 -12.566 7.369 14.573 hybrid contribution -0.439 0.962 -0.171 1.071 sum -0.844 -11.604 7.198 13.681 Atomic orbital electron populations 1.25643 0.96450 0.99426 1.00506 1.24328 0.95883 1.01358 1.00916 1.18249 0.83168 0.89868 0.99041 1.43271 1.55781 1.11130 1.05511 1.19512 1.34997 0.84830 1.09848 0.88280 1.26372 0.92724 1.01563 0.97072 1.69791 1.26225 1.30401 1.24577 0.85465 0.79690 0.78197 0.78667 1.19726 1.16539 1.18383 1.17557 0.79473 0.86589 0.83105 1.90577 1.59002 1.27087 1.72993 1.25613 1.18689 1.00059 0.97963 1.84800 1.57177 1.00533 1.04179 1.28400 1.01868 0.99815 0.98659 1.20537 0.97328 0.87127 1.01035 0.87864 1.21590 0.97403 0.96840 0.98769 1.22181 0.97750 0.96062 1.02458 1.22851 0.89375 0.99070 0.91275 1.87928 1.48770 1.29598 1.64857 1.22430 0.94254 0.84422 0.98659 1.65989 1.16759 0.99200 1.38364 1.21011 0.97415 0.94645 0.90118 1.20437 1.02221 0.92806 0.97836 0.72792 0.91222 0.86834 0.90600 0.91668 0.91286 0.88471 0.90385 0.92779 0.86664 0.89044 0.92655 0.90657 0.89763 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.39 19.25 74.32 1.43 -5.96 16 2 C -0.22 -9.98 13.67 31.12 0.43 -9.56 16 3 C 0.22 10.76 5.48 84.57 0.46 11.22 16 4 N -0.44 -22.40 2.40 -650.08 -1.56 -23.96 16 5 C -0.36 -17.36 6.90 84.09 0.58 -16.78 16 6 H 0.10 4.59 5.34 -15.60 -0.08 4.51 16 7 C 0.03 1.44 5.22 84.94 0.44 1.88 16 8 N -0.88 -43.42 11.45 21.67 0.25 -43.17 16 9 Si 0.96 35.52 29.56 68.60 2.03 37.55 16 10 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 11 H -0.24 -8.25 7.11 99.48 0.71 -7.54 16 12 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 13 C 0.54 27.91 7.58 86.41 0.66 28.56 16 14 O -0.61 -33.03 13.87 -4.43 -0.06 -33.09 16 15 C -0.30 -13.56 6.34 24.10 0.15 -13.41 16 16 S 0.27 10.22 18.52 -56.49 -1.05 9.17 16 17 C -0.01 -0.49 5.90 88.47 0.52 0.03 16 18 C -0.04 -0.99 2.82 -11.45 -0.03 -1.02 16 19 H 0.10 2.46 8.12 -2.39 -0.02 2.44 16 20 C -0.11 -2.33 5.29 30.71 0.16 -2.17 16 21 C -0.15 -2.33 6.14 30.68 0.19 -2.14 16 22 C 0.05 0.85 6.84 72.01 0.49 1.35 16 23 O -0.39 -9.21 10.77 -148.98 -1.60 -10.82 16 24 C 0.08 2.04 6.10 72.01 0.44 2.48 16 25 N -0.49 -17.99 10.47 -177.52 -1.86 -19.84 16 26 C 0.11 4.45 6.83 42.35 0.29 4.74 16 27 C -0.07 -2.74 9.80 71.24 0.70 -2.04 16 28 H 0.26 6.32 7.80 -4.43 -0.03 6.28 16 29 H 0.07 3.52 7.37 -2.39 -0.02 3.50 16 30 H 0.11 5.74 5.87 -2.39 -0.01 5.72 16 31 H 0.28 13.12 8.32 -92.71 -0.77 12.35 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.08 3.24 5.92 -2.38 -0.01 3.22 16 Total: -1.00 -61.80 362.71 4.03 -57.77 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.97 Total: 29.21 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 6.91 Total: -2.81 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -3.17 Total: -86.98 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -1.67 Total: -43.91 kcal Atomic # 14 Polarization: 35.52 SS G_CDS: 2.03 Total: 37.55 kcal Atomic # 16 Polarization: 10.22 SS G_CDS: -1.05 Total: 9.17 kcal Total: -61.80 4.03 -57.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368633980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.536 kcal (2) G-P(sol) polarization free energy of solvation -61.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds