Wall clock time and date at job start Tue Mar 31 2020 17:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37960 * 120.07886 * 2 1 4 4 C 1.38341 * 120.15346 * 179.74744 * 3 2 1 5 5 S 1.76197 * 119.85402 * 180.28068 * 4 3 2 6 6 O 1.42102 * 106.39749 * 23.81331 * 5 4 3 7 7 O 1.42095 * 106.40539 * 156.73284 * 5 4 3 8 8 N 1.65596 * 107.21669 * 270.27618 * 5 4 3 9 9 C 1.46924 * 120.63052 * 269.71708 * 8 5 4 10 10 C 1.52761 * 109.01014 * 233.58689 * 9 8 5 11 11 C 1.53046 * 109.38101 * 305.58869 * 10 9 8 12 12 C 1.53036 * 109.54135 * 61.23700 * 11 10 9 13 13 H 1.09005 * 109.52206 * 58.60132 * 12 11 10 14 14 C 1.50705 * 109.49959 * 178.68435 * 12 11 10 15 15 H 1.08000 * 119.99811 * 119.83773 * 14 12 11 16 16 C 1.37870 * 119.99858 * 299.84123 * 14 12 11 17 17 N 1.31516 * 120.00472 * 359.97438 * 16 14 12 18 18 Si 1.86807 * 120.00011 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46782 * 89.99670 * 18 16 14 20 20 H 1.48494 * 109.46883 * 210.00017 * 18 16 14 21 21 H 1.48501 * 109.46702 * 329.99845 * 18 16 14 22 22 C 1.46929 * 120.63274 * 89.99780 * 8 5 4 23 23 C 1.38390 * 120.30308 * 0.55481 * 4 3 2 24 24 C 1.37934 * 120.14706 * 359.70137 * 23 4 3 25 25 C 1.39611 * 120.07227 * 180.27956 * 2 1 3 26 26 C 1.43204 * 120.15282 * 359.95376 * 25 2 1 27 27 N 3.48501 * 80.49178 * 180.25035 * 2 1 3 28 28 H 1.08999 * 109.47015 * 269.72377 * 1 2 3 29 29 H 1.09000 * 109.46646 * 29.71530 * 1 2 3 30 30 H 1.09000 * 109.47248 * 149.72247 * 1 2 3 31 31 H 1.07998 * 119.92628 * 0.02881 * 3 2 1 32 32 H 1.09002 * 109.58745 * 353.41975 * 9 8 5 33 33 H 1.09000 * 109.59003 * 113.84724 * 9 8 5 34 34 H 1.08998 * 109.56689 * 185.55542 * 10 9 8 35 35 H 1.09002 * 109.36500 * 65.49515 * 10 9 8 36 36 H 1.09005 * 109.45861 * 301.21865 * 11 10 9 37 37 H 1.08997 * 109.45167 * 181.25809 * 11 10 9 38 38 H 0.96997 * 120.00746 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.58485 * 246.15687 * 22 8 5 40 40 H 1.09003 * 109.58756 * 6.58124 * 22 8 5 41 41 H 1.07996 * 119.92792 * 179.72723 * 23 4 3 42 42 H 1.08001 * 120.06950 * 179.97438 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1938 0.0000 4 6 3.5819 1.1956 0.0053 5 16 4.4570 2.7249 0.0127 6 8 3.5716 3.6910 0.5624 7 8 5.7411 2.4499 0.5553 8 7 4.6998 3.1584 -1.5670 9 6 5.9098 2.7316 -2.2828 10 6 6.5942 3.9601 -2.8796 11 6 5.5921 4.7308 -3.7422 12 6 4.4238 5.2012 -2.8728 13 1 4.8000 5.8320 -2.0673 14 6 3.4537 5.9877 -3.7164 15 1 2.4321 5.6527 -3.8185 16 6 3.8705 7.1347 -4.3578 17 7 5.1145 7.5429 -4.2330 18 14 2.6679 8.1100 -5.4029 19 1 1.9894 9.1259 -4.5587 20 1 3.4031 8.7889 -6.5000 21 1 1.6553 7.1901 -5.9806 22 6 3.7123 3.9822 -2.2775 23 6 4.2818 0.0018 -0.0010 24 6 3.6031 -1.1991 -0.0063 25 6 2.2066 -1.2082 -0.0059 26 6 1.4955 -2.4511 -0.0110 27 7 0.9314 -3.4371 -0.0150 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3632 0.8926 -0.5094 30 1 -0.3634 -0.8875 -0.5181 31 1 1.6586 2.1292 0.0005 32 1 6.5898 2.2374 -1.5888 33 1 5.6375 2.0436 -3.0831 34 1 7.4373 3.6455 -3.4947 35 1 6.9505 4.6023 -2.0742 36 1 5.2176 4.0804 -4.5326 37 1 6.0852 5.5953 -4.1866 38 1 5.4079 8.3497 -4.6846 39 1 3.2570 3.3982 -3.0773 40 1 2.9426 4.3128 -1.5801 41 1 5.3617 0.0103 -0.0013 42 1 4.1506 -2.1300 -0.0116 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397750993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:21 Heat of formation + Delta-G solvation = -25.852361 kcal Electronic energy + Delta-G solvation = -26531.159766 eV Core-core repulsion = 22795.930677 eV Total energy + Delta-G solvation = -3735.229089 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.04875 -37.78835 -37.14118 -36.85726 -35.67629 -33.39617 -33.34672 -31.93682 -31.17592 -30.15055 -27.65074 -25.16083 -24.71449 -23.65681 -22.40591 -21.70938 -19.65288 -19.25414 -18.59141 -17.42025 -17.20534 -16.51412 -16.17406 -15.35435 -14.96323 -14.83638 -14.65928 -14.34286 -14.00867 -13.67931 -13.55395 -13.49647 -13.36446 -13.23968 -12.93223 -12.86013 -12.80319 -12.52829 -12.43930 -12.21800 -11.92926 -11.84067 -11.59042 -11.43564 -11.00176 -10.93560 -10.87914 -10.73880 -10.26528 -9.97204 -9.84512 -9.69959 -9.41274 -9.24369 -8.87182 -8.49999 -8.23446 -6.03543 -4.11174 -0.07308 0.53252 0.85232 2.21197 2.32359 3.11958 3.28547 3.33782 3.35736 3.37598 3.40508 3.89142 4.11462 4.26667 4.39736 4.56017 4.80335 4.84489 5.05067 5.16302 5.18043 5.21208 5.27072 5.43106 5.54728 5.63557 5.67265 5.70321 5.75128 5.83447 5.97872 6.18021 6.28911 6.29676 6.40849 6.56537 6.59288 6.82543 6.95146 7.00487 7.18239 7.40236 7.68186 7.92516 8.06356 8.35671 8.92145 9.53890 11.01941 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.015435 B = 0.003425 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.572967 B = 8172.221648 C = 9063.352051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.057 4.057 3 C -0.020 4.020 4 C -0.644 4.644 5 S 2.682 3.318 6 O -0.948 6.948 7 O -0.959 6.959 8 N -0.986 5.986 9 C 0.122 3.878 10 C -0.132 4.132 11 C -0.111 4.111 12 C 0.042 3.958 13 H 0.033 0.967 14 C -0.516 4.516 15 H 0.058 0.942 16 C 0.064 3.936 17 N -0.887 5.887 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.122 3.878 23 C -0.029 4.029 24 C -0.089 4.089 25 C 0.013 3.987 26 C 0.254 3.746 27 N -0.406 5.406 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.153 0.847 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.036 0.964 37 H 0.095 0.905 38 H 0.261 0.739 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.151 0.849 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.917 -14.918 6.659 16.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.060 4.060 3 C -0.039 4.039 4 C -0.729 4.729 5 S 2.771 3.229 6 O -0.938 6.938 7 O -0.949 6.949 8 N -0.827 5.827 9 C -0.003 4.003 10 C -0.171 4.171 11 C -0.149 4.149 12 C 0.022 3.978 13 H 0.051 0.949 14 C -0.555 4.555 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.001 4.001 23 C -0.048 4.048 24 C -0.110 4.110 25 C 0.010 3.990 26 C -0.062 4.062 27 N -0.081 5.081 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.171 0.829 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.113 0.887 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.168 0.832 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.442 -15.902 7.339 17.684 hybrid contribution -0.701 0.253 -0.946 1.205 sum -3.144 -15.649 6.393 17.194 Atomic orbital electron populations 1.20960 0.89711 1.04006 1.03503 1.20053 0.96721 0.91377 0.97854 1.20845 0.92019 0.98666 0.92327 1.31744 1.06458 1.21935 1.12740 1.02391 0.73680 0.73511 0.73325 1.93594 1.66881 1.57068 1.76273 1.93551 1.38785 1.85753 1.76816 1.57608 1.29923 1.64096 1.31061 1.21398 0.84974 0.97747 0.96200 1.21883 0.98643 0.96429 1.00140 1.21599 0.96599 0.99459 0.97227 1.18945 0.93403 0.90374 0.95061 0.94905 1.21072 0.96457 1.08342 1.29620 0.92408 1.24935 0.95149 0.97194 0.96509 1.69870 1.15562 1.23620 1.43521 0.86595 0.81108 0.80250 0.80020 1.20659 1.21317 1.19923 1.21923 0.89794 0.92840 0.95574 1.20879 1.00763 0.90330 0.92813 1.21272 0.91807 0.99287 0.98634 1.16147 0.92531 0.86546 1.03773 1.25604 0.93511 0.92828 0.94220 1.81269 1.08281 1.10818 1.07763 0.89960 0.89671 0.91346 0.82911 0.90215 0.91977 0.92373 0.92183 0.94552 0.88698 0.92921 0.92297 0.90150 0.83151 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 9.61 36.01 0.35 -0.59 16 2 C -0.06 -0.53 5.91 -104.21 -0.62 -1.15 16 3 C -0.02 -0.21 9.16 -39.65 -0.36 -0.57 16 4 C -0.64 -7.47 5.98 -39.49 -0.24 -7.70 16 5 S 2.68 39.97 5.72 -107.50 -0.62 39.36 16 6 O -0.95 -16.75 15.86 -57.17 -0.91 -17.65 16 7 O -0.96 -15.54 15.85 -57.17 -0.91 -16.45 16 8 N -0.99 -15.66 3.30 -113.77 -0.37 -16.04 16 9 C 0.12 1.77 6.45 -3.93 -0.03 1.75 16 10 C -0.13 -2.27 6.07 -26.83 -0.16 -2.43 16 11 C -0.11 -2.36 4.96 -26.69 -0.13 -2.49 16 12 C 0.04 0.97 2.25 -91.65 -0.21 0.77 16 13 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 14 C -0.52 -13.15 8.56 -34.44 -0.29 -13.45 16 15 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 17 N -0.89 -24.16 11.32 55.43 0.63 -23.53 16 18 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 C 0.12 2.26 5.70 -3.71 -0.02 2.23 16 23 C -0.03 -0.28 9.50 -39.64 -0.38 -0.65 16 24 C -0.09 -0.74 9.76 -39.17 -0.38 -1.12 16 25 C 0.01 0.12 5.73 -106.93 -0.61 -0.49 16 26 C 0.25 2.56 13.80 -22.47 -0.31 2.25 16 27 N -0.41 -4.83 18.54 41.83 0.78 -4.06 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.07 0.52 7.09 -51.93 -0.37 0.15 16 31 H 0.15 1.52 7.61 -52.49 -0.40 1.12 16 32 H 0.08 1.01 6.91 -51.93 -0.36 0.65 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 2.32 6.05 -51.93 -0.31 2.01 16 38 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.46 6.92 -51.93 -0.36 1.10 16 41 H 0.15 1.21 7.60 -52.49 -0.40 0.81 16 42 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -30.77 361.57 -10.00 -40.78 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.54 Total: -1.07 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -3.49 Total: -22.08 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 1.03 Total: -43.62 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -1.81 Total: -34.10 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 39.97 SS G_CDS: -0.62 Total: 39.36 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.77 -10.00 -40.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397750993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.923 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds