Wall clock time and date at job start Tue Mar 31 2020 18:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47369 * 2 1 4 4 C 1.50701 * 109.47335 * 239.99949 * 2 1 3 5 5 H 1.07999 * 120.00406 * 240.00279 * 4 2 1 6 6 C 1.37879 * 120.00112 * 59.99380 * 4 2 1 7 7 N 1.31520 * 119.99790 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00215 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47263 * 60.00503 * 8 6 4 10 10 H 1.48501 * 109.47068 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47296 * 300.00346 * 8 6 4 12 12 C 1.53004 * 109.47078 * 119.99949 * 2 1 3 13 13 N 1.46499 * 109.47094 * 299.99903 * 12 2 1 14 14 S 1.65597 * 119.99926 * 165.27799 * 13 12 2 15 15 O 1.42096 * 106.40195 * 178.26439 * 14 13 12 16 16 O 1.42108 * 106.40105 * 311.18495 * 14 13 12 17 17 C 1.76199 * 107.22117 * 64.72196 * 14 13 12 18 18 C 1.39366 * 119.57011 * 269.73248 * 17 14 13 19 19 C 1.36072 * 121.06976 * 179.68428 * 18 17 14 20 20 C 1.40596 * 119.74738 * 0.60190 * 19 18 17 21 21 N 1.33687 * 121.08160 * 179.67858 * 20 19 18 22 22 C 1.31079 * 121.32209 * 179.97438 * 21 20 19 23 23 C 1.39338 * 121.75087 * 0.02562 * 22 21 20 24 24 C 1.36580 * 119.93234 * 359.97438 * 23 22 21 25 25 C 1.40766 * 118.14915 * 0.02562 * 24 23 22 26 26 C 1.36141 * 119.56969 * 90.00049 * 17 14 13 27 27 H 1.09005 * 109.46768 * 300.00045 * 1 2 3 28 28 H 1.08998 * 109.46906 * 59.99946 * 1 2 3 29 29 H 1.08995 * 109.47092 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47073 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46733 * 300.00216 * 3 2 1 32 32 H 1.08996 * 109.47023 * 59.99631 * 3 2 1 33 33 H 0.96996 * 120.00150 * 179.97438 * 7 6 4 34 34 H 1.09007 * 109.47007 * 179.97438 * 12 2 1 35 35 H 1.08995 * 109.47080 * 60.00089 * 12 2 1 36 36 H 0.97001 * 119.99790 * 344.99588 * 13 12 2 37 37 H 1.08000 * 119.46237 * 359.97438 * 18 17 14 38 38 H 1.07996 * 120.12555 * 180.27812 * 19 18 17 39 39 H 1.08002 * 119.12666 * 180.02562 * 22 21 20 40 40 H 1.07993 * 120.03157 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.92399 * 179.97438 * 24 23 22 42 42 H 1.08007 * 120.18595 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2395 -2.4828 7 7 0.9434 0.8301 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8268 -0.4200 -5.2204 11 1 3.8064 -1.1210 -4.0082 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0306 2.4454 14 16 1.6320 -0.7754 3.9223 15 8 1.1264 0.1557 4.8692 16 8 1.0889 -2.0767 3.7455 17 6 3.3381 -0.9959 4.3033 18 6 3.9844 -2.1670 3.9119 19 6 5.3025 -2.3663 4.1846 20 6 6.0267 -1.3843 4.8831 21 7 7.3210 -1.5552 5.1707 22 6 8.0008 -0.6426 5.8212 23 6 7.4120 0.5471 6.2450 24 6 6.0928 0.7854 5.9837 25 6 5.3661 -0.1970 5.2850 26 6 4.0064 -0.0224 4.9809 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.7093 1.1616 -3.4844 34 1 3.1301 -0.7217 1.2490 35 1 1.6767 -1.7489 1.2493 36 1 1.1851 0.8645 2.3729 37 1 3.4312 -2.9265 3.3796 38 1 5.7893 -3.2777 3.8703 39 1 9.0450 -0.8173 6.0344 40 1 7.9982 1.2799 6.7794 41 1 5.6201 1.7017 6.3051 42 1 3.4935 0.8788 5.2831 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416530850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:15 Heat of formation + Delta-G solvation = -43.323929 kcal Electronic energy + Delta-G solvation = -26463.063130 eV Core-core repulsion = 22727.076416 eV Total energy + Delta-G solvation = -3735.986713 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.88254 -38.68846 -38.27305 -38.24333 -36.97735 -34.93140 -34.62176 -32.33513 -31.80942 -31.25743 -27.49808 -27.37754 -26.25606 -25.69030 -24.85822 -23.32981 -20.95377 -20.65284 -19.58727 -18.88668 -18.62278 -18.02286 -17.62079 -17.00785 -16.70316 -16.51166 -15.72227 -15.57413 -15.52882 -15.22424 -15.04644 -14.85477 -14.60104 -14.10638 -14.01870 -13.61270 -13.39367 -13.31169 -13.24491 -13.18782 -13.12423 -12.89766 -12.70098 -12.67169 -12.53712 -12.24258 -12.07361 -11.98310 -11.68272 -11.44512 -11.09649 -10.65563 -10.59256 -10.40203 -10.22848 -10.12280 -9.52068 -7.96903 -6.12797 -0.95300 -0.60265 -0.41392 0.81315 1.46773 1.48437 1.53353 1.54611 2.09660 2.49562 2.66530 2.95971 3.18695 3.26749 3.27370 3.46455 3.68885 3.87291 3.96688 3.98621 4.19699 4.25147 4.43668 4.58345 4.59367 4.75872 4.79376 4.80757 4.83401 4.89823 5.03827 5.10937 5.13804 5.15004 5.26494 5.27641 5.42804 5.54373 5.68815 5.72779 5.73529 6.10881 6.21648 6.30538 6.48876 6.79917 6.93850 7.54851 9.01667 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.013370 B = 0.003547 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.690657 B = 7892.035527 C = 8903.231731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.054 3.946 3 C -0.123 4.123 4 C -0.526 4.526 5 H 0.054 0.946 6 C 0.026 3.974 7 N -0.902 5.902 8 Si 0.943 3.057 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.138 3.862 13 N -1.103 6.103 14 S 2.712 3.288 15 O -0.981 6.981 16 O -0.984 6.984 17 C -0.679 4.679 18 C -0.037 4.037 19 C -0.119 4.119 20 C 0.143 3.857 21 N -0.516 5.516 22 C 0.149 3.851 23 C -0.175 4.175 24 C -0.043 4.043 25 C -0.149 4.149 26 C 0.030 3.970 27 H 0.033 0.967 28 H 0.059 0.941 29 H 0.019 0.981 30 H 0.025 0.975 31 H 0.058 0.942 32 H 0.036 0.964 33 H 0.258 0.742 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.422 0.578 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.196 0.804 40 H 0.183 0.817 41 H 0.176 0.824 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.260 1.913 18.229 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.052 3.948 3 C -0.181 4.181 4 C -0.564 4.564 5 H 0.072 0.928 6 C -0.174 4.174 7 N -0.541 5.541 8 Si 0.770 3.230 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.200 1.200 12 C 0.012 3.988 13 N -0.866 5.866 14 S 2.803 3.197 15 O -0.971 6.971 16 O -0.975 6.975 17 C -0.767 4.767 18 C -0.058 4.058 19 C -0.138 4.138 20 C 0.022 3.978 21 N -0.225 5.225 22 C -0.023 4.023 23 C -0.194 4.194 24 C -0.069 4.069 25 C -0.152 4.152 26 C 0.010 3.990 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.259 0.741 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.213 0.787 40 H 0.200 0.800 41 H 0.193 0.807 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 11.854 0.759 18.290 21.809 hybrid contribution 0.271 0.504 -1.165 1.298 sum 12.125 1.262 17.125 21.021 Atomic orbital electron populations 1.21726 0.97960 0.98710 1.00093 1.18293 0.92740 0.93107 0.90610 1.21688 0.98219 0.98031 1.00196 1.21340 1.31506 1.12235 0.91368 0.92801 1.25481 0.95254 0.95590 1.01071 1.69931 1.37219 1.23508 1.23438 0.85854 0.78679 0.78823 0.79647 1.20212 1.21394 1.20035 1.21384 0.97691 0.95524 0.84194 1.55308 1.78211 1.30773 1.22303 1.01111 0.73824 0.72764 0.72016 1.93534 1.78928 1.63837 1.60795 1.93542 1.76831 1.41084 1.86002 1.30562 1.26852 1.03895 1.15387 1.20662 0.94830 0.95006 0.95312 1.21009 0.93681 0.99781 0.99349 1.19278 0.90694 0.93021 0.94788 1.68179 1.06496 1.32897 1.14920 1.23874 1.01401 0.88543 0.88432 1.22395 0.95718 0.99536 1.01747 1.22041 0.94809 0.98006 0.92028 1.19174 0.95381 0.97203 1.03472 1.21223 0.92716 0.96825 0.88274 0.94851 0.92210 0.96182 0.95599 0.92339 0.94510 0.93273 0.92117 0.91899 0.74068 0.83353 0.83090 0.78684 0.79963 0.80695 0.81354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.08 71.98 0.58 -5.21 16 2 C 0.05 2.43 0.51 -52.93 -0.03 2.41 16 3 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 4 C -0.53 -26.75 8.01 25.60 0.21 -26.55 16 5 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 6 C 0.03 1.33 5.15 84.65 0.44 1.76 16 7 N -0.90 -48.18 9.35 21.45 0.20 -47.98 16 8 Si 0.94 41.94 29.54 68.60 2.03 43.96 16 9 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 C 0.14 5.18 5.05 86.38 0.44 5.62 16 13 N -1.10 -35.08 5.33 -187.48 -1.00 -36.08 16 14 S 2.71 82.51 5.72 -56.49 -0.32 82.18 16 15 O -0.98 -31.49 17.21 -128.00 -2.20 -33.69 16 16 O -0.98 -35.77 16.71 -128.00 -2.14 -37.90 16 17 C -0.68 -18.42 5.91 22.05 0.13 -18.29 16 18 C -0.04 -1.01 9.42 22.04 0.21 -0.81 16 19 C -0.12 -3.10 9.98 22.34 0.22 -2.88 16 20 C 0.14 3.66 6.60 40.29 0.27 3.93 16 21 N -0.52 -11.88 10.34 -188.63 -1.95 -13.83 16 22 C 0.15 2.15 11.15 85.07 0.95 3.09 16 23 C -0.17 -1.86 10.03 22.15 0.22 -1.64 16 24 C -0.04 -0.62 9.90 22.50 0.22 -0.40 16 25 C -0.15 -3.33 5.74 -21.28 -0.12 -3.45 16 26 C 0.03 0.69 9.22 22.31 0.21 0.90 16 27 H 0.03 1.31 7.20 -2.38 -0.02 1.30 16 28 H 0.06 3.02 6.07 -2.39 -0.01 3.01 16 29 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 2.87 6.07 -2.39 -0.01 2.85 16 32 H 0.04 1.33 6.60 -2.39 -0.02 1.32 16 33 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 34 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.06 2.43 7.76 -2.39 -0.02 2.41 16 36 H 0.42 12.51 6.47 -96.74 -0.63 11.88 16 37 H 0.15 3.85 7.56 -2.91 -0.02 3.83 16 38 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 39 H 0.20 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 41 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 42 H 0.17 3.08 7.55 -2.91 -0.02 3.06 16 Total: -1.00 -68.56 356.36 -0.45 -69.01 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.42 Total: 20.59 kcal Atomic # 6 Polarization: -50.77 SS G_CDS: 4.52 Total: -46.25 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -2.75 Total: -97.90 kcal Atomic # 8 Polarization: -67.25 SS G_CDS: -4.34 Total: -71.59 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 82.51 SS G_CDS: -0.32 Total: 82.18 kcal Total: -68.56 -0.45 -69.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416530850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.684 kcal (2) G-P(sol) polarization free energy of solvation -68.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds