Wall clock time and date at job start Tue Mar 31 2020 17:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36612 * 120.92646 * 2 1 4 4 C 1.39287 * 119.93730 * 180.02562 * 3 2 1 5 5 N 1.31108 * 121.75174 * 359.97438 * 4 3 2 6 6 C 1.33650 * 121.32024 * 0.02562 * 5 4 3 7 7 C 1.40726 * 120.92601 * 180.02562 * 2 1 3 8 8 C 1.40438 * 121.38217 * 0.02562 * 7 2 1 9 9 C 1.36129 * 119.61636 * 179.97438 * 8 7 2 10 10 C 1.39369 * 120.87251 * 359.72879 * 9 8 7 11 11 C 1.36070 * 121.06718 * 0.56275 * 10 9 8 12 12 S 1.76204 * 120.11936 * 179.71610 * 11 10 9 13 13 O 1.42103 * 106.40594 * 1.18737 * 12 11 10 14 14 O 1.42101 * 106.39902 * 228.26377 * 12 11 10 15 15 N 1.65603 * 107.21522 * 114.72510 * 12 11 10 16 16 C 1.46499 * 119.99954 * 269.99673 * 15 12 11 17 17 C 1.46506 * 120.00110 * 90.00068 * 15 12 11 18 18 H 1.08998 * 109.46566 * 359.97438 * 17 15 12 19 19 C 1.52997 * 109.47289 * 119.99604 * 17 15 12 20 20 C 1.50697 * 109.47015 * 240.00062 * 17 15 12 21 21 H 1.07998 * 120.00039 * 359.97438 * 20 17 15 22 22 C 1.37880 * 119.99815 * 179.97438 * 20 17 15 23 23 N 1.31508 * 119.99915 * 359.97438 * 22 20 17 24 24 Si 1.86805 * 119.99777 * 179.97438 * 22 20 17 25 25 H 1.48501 * 109.47152 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47204 * 119.99883 * 24 22 20 27 27 H 1.48496 * 109.47191 * 240.00215 * 24 22 20 28 28 H 1.09000 * 109.47060 * 90.00509 * 1 2 3 29 29 H 1.09001 * 109.47006 * 210.00346 * 1 2 3 30 30 H 1.09001 * 109.47409 * 330.00626 * 1 2 3 31 31 H 1.08004 * 120.03212 * 0.03819 * 3 2 1 32 32 H 1.07997 * 119.12194 * 180.02562 * 4 3 2 33 33 H 1.08005 * 120.19090 * 359.96712 * 8 7 2 34 34 H 1.07996 * 119.56523 * 180.02562 * 9 8 7 35 35 H 1.07994 * 119.46273 * 180.29807 * 10 9 8 36 36 H 1.09000 * 109.46842 * 270.00029 * 16 15 12 37 37 H 1.08994 * 109.47173 * 30.00563 * 16 15 12 38 38 H 1.08998 * 109.46730 * 150.00596 * 16 15 12 39 39 H 1.09002 * 109.47153 * 179.97438 * 19 17 15 40 40 H 1.09001 * 109.46832 * 60.00146 * 19 17 15 41 41 H 1.09004 * 109.47261 * 300.00128 * 19 17 15 42 42 H 0.97001 * 119.99839 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2090 1.1719 0.0000 4 6 3.6017 1.1478 -0.0005 5 7 4.2723 0.0212 -0.0006 6 6 3.6466 -1.1597 -0.0006 7 6 2.2302 -1.2072 -0.0005 8 6 1.5775 -2.4507 -0.0016 9 6 2.3128 -3.5964 -0.0027 10 6 3.7058 -3.5521 -0.0083 11 6 4.3706 -2.3649 -0.0015 12 16 6.1325 -2.3382 -0.0013 13 8 6.5545 -3.6946 -0.0373 14 8 6.5198 -1.4305 1.0212 15 7 6.6125 -1.6610 -1.4343 16 6 6.8424 -2.5107 -2.6053 17 6 6.8074 -0.2121 -1.5309 18 1 6.5902 0.2486 -0.5673 19 6 8.2567 0.0826 -1.9225 20 6 5.8799 0.3508 -2.5768 21 1 5.2124 -0.3051 -3.1159 22 6 5.8836 1.7032 -2.8454 23 7 6.6960 2.5018 -2.1885 24 14 4.7344 2.4008 -4.1424 25 1 3.9288 1.3019 -4.7327 26 1 3.8290 3.3979 -3.5168 27 1 5.5321 3.0572 -5.2091 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.6847 2.1161 0.0006 32 1 4.1435 2.0821 -0.0001 33 1 0.4985 -2.4978 -0.0015 34 1 1.8101 -4.5522 -0.0039 35 1 4.2665 -4.4751 -0.0139 36 1 7.8829 -2.8352 -2.6200 37 1 6.1904 -3.3827 -2.5551 38 1 6.6251 -1.9461 -3.5120 39 1 8.4016 1.1605 -1.9949 40 1 8.4735 -0.3783 -2.8863 41 1 8.9276 -0.3246 -1.1660 42 1 6.6983 3.4533 -2.3772 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547646919.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:55 Heat of formation + Delta-G solvation = -9.204099 kcal Electronic energy + Delta-G solvation = -28285.257474 eV Core-core repulsion = 24550.750308 eV Total energy + Delta-G solvation = -3734.507166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.64412 -37.05433 -36.38814 -35.98778 -35.06358 -34.50746 -32.48520 -30.44050 -30.37127 -28.94109 -27.69567 -25.38860 -25.05996 -23.84969 -23.43358 -21.39513 -20.56819 -18.38935 -17.75461 -17.36042 -16.82662 -16.32525 -16.12361 -15.63870 -15.06402 -14.58121 -14.53268 -14.30867 -13.80921 -13.45550 -13.36050 -13.18103 -13.01173 -12.65724 -12.62097 -12.49613 -11.96634 -11.86559 -11.62678 -11.61205 -11.36036 -11.24751 -11.18481 -11.09757 -10.86127 -10.80498 -10.57861 -10.31226 -10.17266 -10.08257 -9.92886 -9.12214 -8.87972 -8.54999 -8.33196 -8.24990 -7.78972 -5.97915 -4.01299 0.31717 1.08016 1.23387 2.01862 3.03483 3.22421 3.32486 3.35557 3.78506 4.29103 4.41109 4.45968 4.60250 4.61500 4.82891 4.84720 4.96472 5.13042 5.16361 5.32581 5.42942 5.46180 5.50899 5.60394 5.69645 5.75458 5.87005 6.02828 6.14453 6.17670 6.24973 6.26670 6.43267 6.46085 6.68492 6.79108 7.00019 7.02091 7.08168 7.30778 7.63965 7.76571 8.04520 8.18894 8.39480 8.42412 8.98788 9.60421 11.07396 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.009761 B = 0.008009 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.768436 B = 3495.192343 C = 5417.503636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.031 4.031 3 C -0.183 4.183 4 C 0.176 3.824 5 N -0.438 5.438 6 C 0.212 3.788 7 C -0.127 4.127 8 C -0.046 4.046 9 C -0.155 4.155 10 C 0.003 3.997 11 C -0.648 4.648 12 S 2.693 3.307 13 O -0.986 6.986 14 O -0.944 6.944 15 N -0.974 5.974 16 C 0.105 3.895 17 C 0.267 3.733 18 H 0.084 0.916 19 C -0.146 4.146 20 C -0.498 4.498 21 H 0.053 0.947 22 C 0.068 3.932 23 N -0.886 5.886 24 Si 0.878 3.122 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.285 1.285 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.165 0.835 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.144 0.856 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.028 0.972 41 H 0.011 0.989 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.556 -6.654 3.169 13.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.039 4.039 3 C -0.203 4.203 4 C 0.004 3.996 5 N -0.145 5.145 6 C 0.088 3.912 7 C -0.130 4.130 8 C -0.065 4.065 9 C -0.174 4.174 10 C -0.018 4.018 11 C -0.733 4.733 12 S 2.781 3.219 13 O -0.977 6.977 14 O -0.934 6.934 15 N -0.814 5.814 16 C -0.042 4.042 17 C 0.165 3.835 18 H 0.102 0.898 19 C -0.206 4.206 20 C -0.538 4.538 21 H 0.072 0.928 22 C -0.134 4.134 23 N -0.526 5.526 24 Si 0.706 3.294 25 H -0.203 1.203 26 H -0.210 1.210 27 H -0.211 1.211 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.152 0.848 32 H 0.183 0.817 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.162 0.838 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.047 0.953 41 H 0.030 0.970 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.064 -6.854 3.843 12.768 hybrid contribution -2.428 0.636 -1.344 2.847 sum -12.492 -6.218 2.500 14.176 Atomic orbital electron populations 1.20833 0.90410 1.03153 1.02865 1.20046 0.96172 0.92239 0.95413 1.21856 0.96074 0.98480 1.03871 1.23060 0.90665 0.97016 0.88823 1.68271 1.38602 0.96970 1.10673 1.18090 0.89074 0.91429 0.92606 1.18721 0.94412 0.94018 1.05817 1.21213 0.99770 0.91617 0.93873 1.20940 0.93973 0.98658 1.03803 1.20836 0.94939 0.96913 0.89079 1.31072 1.29069 0.96857 1.16273 1.01946 0.73402 0.72486 0.74057 1.93488 1.80502 1.36206 1.87478 1.93558 1.80534 1.64122 1.55204 1.57365 1.80293 1.18163 1.25612 1.21212 0.99589 0.92958 0.90420 1.18904 0.92866 0.71886 0.99867 0.89833 1.22098 0.96927 1.04063 0.97476 1.21289 1.20164 0.92311 1.20080 0.92842 1.24753 0.95651 0.96918 0.96043 1.69893 1.37335 1.04078 1.41271 0.86768 0.81189 0.79093 0.82325 1.20251 1.21038 1.21127 0.90453 0.91154 0.90792 0.84778 0.81744 0.85125 0.85126 0.83826 0.93684 0.93342 0.90286 0.88897 0.95262 0.97004 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.60 36.00 0.35 -0.77 16 2 C -0.03 -0.44 5.92 -104.27 -0.62 -1.05 16 3 C -0.18 -2.76 9.72 -39.78 -0.39 -3.15 16 4 C 0.18 3.31 11.14 -17.47 -0.19 3.11 16 5 N -0.44 -9.41 6.34 -10.98 -0.07 -9.48 16 6 C 0.21 4.20 6.57 -84.86 -0.56 3.64 16 7 C -0.13 -2.08 5.74 -106.80 -0.61 -2.69 16 8 C -0.05 -0.60 9.31 -39.51 -0.37 -0.97 16 9 C -0.15 -1.98 9.95 -39.92 -0.40 -2.38 16 10 C 0.00 0.05 9.47 -39.94 -0.38 -0.33 16 11 C -0.65 -12.46 5.91 -39.47 -0.23 -12.69 16 12 S 2.69 57.50 5.24 -107.50 -0.56 56.93 16 13 O -0.99 -20.77 16.00 -57.17 -0.92 -21.68 16 14 O -0.94 -22.91 15.89 -57.17 -0.91 -23.82 16 15 N -0.97 -21.32 3.06 -115.86 -0.35 -21.68 16 16 C 0.10 1.96 9.28 59.85 0.56 2.52 16 17 C 0.27 6.58 1.85 -69.08 -0.13 6.45 16 18 H 0.08 2.26 5.74 -51.93 -0.30 1.97 16 19 C -0.15 -3.52 8.97 37.16 0.33 -3.19 16 20 C -0.50 -12.66 7.20 -34.44 -0.25 -12.90 16 21 H 0.05 1.39 7.33 -52.49 -0.38 1.00 16 22 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 23 N -0.89 -23.45 11.32 55.43 0.63 -22.83 16 24 Si 0.88 20.19 29.54 -169.99 -5.02 15.16 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.57 6.53 -51.93 -0.34 0.23 16 30 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 32 H 0.17 3.03 8.06 -52.49 -0.42 2.60 16 33 H 0.13 1.22 6.45 -52.48 -0.34 0.88 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.14 1.98 7.26 -52.49 -0.38 1.59 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.79 7.79 -51.93 -0.40 0.39 16 38 H 0.08 1.50 7.02 -51.93 -0.36 1.13 16 39 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 40 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 41 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 351.53 15.07 5.30 5.30 Total: -1.00 -32.01 351.53 -10.21 -42.22 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.32 Total: 2.64 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -2.98 Total: -22.76 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.20 Total: -53.98 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -1.82 Total: -45.51 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 57.50 SS G_CDS: -0.56 Total: 56.93 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.01 -10.21 -42.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547646919.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.014 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds