Wall clock time and date at job start Tue Mar 31 2020 17:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37967 * 120.07708 * 2 1 4 4 C 1.38344 * 120.15132 * 179.76503 * 3 2 1 5 5 C 1.38386 * 120.30463 * 0.51756 * 4 3 2 6 6 C 1.37929 * 120.14824 * 359.47915 * 5 4 3 7 7 S 1.76199 * 120.07552 * 180.23540 * 6 5 4 8 8 O 1.42099 * 106.40249 * 228.54482 * 7 6 5 9 9 O 1.42108 * 106.40160 * 1.46487 * 7 6 5 10 10 N 1.65599 * 107.21907 * 115.00039 * 7 6 5 11 11 C 1.46929 * 120.63390 * 269.72442 * 10 7 6 12 12 C 1.52758 * 109.00419 * 233.58108 * 11 10 7 13 13 C 1.53039 * 109.38748 * 305.58400 * 12 11 10 14 14 C 1.53047 * 109.53706 * 61.24447 * 13 12 11 15 15 H 1.09001 * 109.52318 * 58.59809 * 14 13 12 16 16 C 1.50695 * 109.50004 * 178.68603 * 14 13 12 17 17 H 1.08000 * 120.00413 * 119.83414 * 16 14 13 18 18 C 1.37881 * 119.99807 * 299.83948 * 16 14 13 19 19 N 1.31517 * 119.99726 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 120.00080 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46803 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47247 * 119.99740 * 20 18 16 23 23 H 1.48505 * 109.46815 * 239.99590 * 20 18 16 24 24 C 1.46926 * 120.63001 * 89.99985 * 10 7 6 25 25 C 1.39618 * 120.07685 * 180.02562 * 2 1 3 26 26 C 1.43196 * 120.14886 * 0.02562 * 25 2 1 27 27 N 3.48505 * 80.49549 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47227 * 269.97654 * 1 2 3 29 29 H 1.08998 * 109.47155 * 29.98043 * 1 2 3 30 30 H 1.08995 * 109.47444 * 149.98098 * 1 2 3 31 31 H 1.07998 * 119.92904 * 0.04446 * 3 2 1 32 32 H 1.07996 * 119.85304 * 180.24893 * 4 3 2 33 33 H 1.08002 * 119.92820 * 179.76623 * 5 4 3 34 34 H 1.08998 * 109.58586 * 353.41242 * 11 10 7 35 35 H 1.08998 * 109.58342 * 113.84386 * 11 10 7 36 36 H 1.09004 * 109.56436 * 185.54995 * 12 11 10 37 37 H 1.09005 * 109.36083 * 65.50136 * 12 11 10 38 38 H 1.09001 * 109.46141 * 301.22481 * 13 12 11 39 39 H 1.08993 * 109.46389 * 181.26021 * 13 12 11 40 40 H 0.97003 * 119.99523 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.59267 * 246.16122 * 24 10 7 42 42 H 1.09002 * 109.58607 * 6.58045 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5818 1.1957 0.0049 5 6 4.2817 0.0019 -0.0009 6 6 3.6031 -1.1990 -0.0009 7 16 4.4962 -2.7179 -0.0021 8 8 3.9209 -3.5208 -1.0236 9 8 5.8744 -2.3731 0.0319 10 7 4.1694 -3.4798 1.4314 11 6 5.0134 -3.2483 2.6117 12 6 5.4942 -4.5942 3.1511 13 6 4.2870 -5.4988 3.4089 14 6 3.5399 -5.7420 2.0955 15 1 4.2142 -6.2007 1.3723 16 6 2.3701 -6.6588 2.3445 17 1 1.3659 -6.3227 2.1323 18 6 2.5818 -7.9266 2.8433 19 7 3.8048 -8.3359 3.1012 20 14 1.1319 -9.0634 3.1513 21 1 -0.1281 -8.3697 2.7819 22 1 1.2814 -10.2905 2.3285 23 1 1.0897 -9.4334 4.5889 24 6 3.0336 -4.4047 1.5457 25 6 2.2067 -1.2082 -0.0005 26 6 1.4956 -2.4511 -0.0016 27 7 0.9315 -3.4372 -0.0015 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6585 2.1292 0.0007 32 1 4.1182 2.1330 0.0090 33 1 5.3617 0.0104 -0.0009 34 1 5.8735 -2.6399 2.3322 35 1 4.4345 -2.7357 3.3799 36 1 6.0391 -4.4406 4.0825 37 1 6.1506 -5.0635 2.4182 38 1 3.6187 -5.0177 4.1231 39 1 4.6271 -6.4514 3.8148 40 1 3.9538 -9.2281 3.4518 41 1 2.2900 -3.9883 2.2252 42 1 2.5877 -4.5590 0.5630 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594800597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:27 Heat of formation + Delta-G solvation = -12.582676 kcal Electronic energy + Delta-G solvation = -27464.748846 eV Core-core repulsion = 23730.095174 eV Total energy + Delta-G solvation = -3734.653672 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.98076 -37.84464 -37.27607 -36.29432 -35.66458 -33.34306 -33.30542 -31.85016 -31.13090 -30.08276 -27.62404 -25.09971 -24.38546 -23.68562 -22.57874 -21.67595 -19.56107 -19.24949 -18.38752 -17.48132 -16.99957 -16.39156 -16.06688 -15.42703 -15.32511 -14.66765 -14.56748 -14.20584 -14.02530 -13.56977 -13.43209 -13.26231 -13.20715 -13.10255 -12.76639 -12.66662 -12.56143 -12.44886 -12.38231 -12.08395 -11.90898 -11.80591 -11.66102 -11.35732 -10.95835 -10.84301 -10.77935 -10.65181 -10.19554 -9.91329 -9.80339 -9.68796 -9.32587 -9.14026 -8.79710 -8.44389 -8.18892 -5.97183 -4.03459 0.16015 0.52078 0.70532 2.57186 2.69845 3.10052 3.32010 3.40070 3.45437 3.50477 3.62279 3.86125 4.17596 4.38762 4.46358 4.61818 4.80763 4.83986 5.03747 5.20601 5.25447 5.28760 5.33241 5.34100 5.62882 5.67900 5.70699 5.77614 5.82967 5.91999 6.01764 6.21171 6.32273 6.34448 6.47188 6.61833 6.64377 6.86001 6.99791 7.22109 7.40452 7.45025 7.75380 7.97650 8.12568 8.43359 9.00032 9.60901 11.08620 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.015657 B = 0.004411 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.959287 B = 6346.570877 C = 7399.192790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.059 4.059 3 C -0.073 4.073 4 C -0.112 4.112 5 C -0.029 4.029 6 C -0.634 4.634 7 S 2.674 3.326 8 O -0.944 6.944 9 O -0.957 6.957 10 N -0.987 5.987 11 C 0.123 3.877 12 C -0.131 4.131 13 C -0.111 4.111 14 C 0.044 3.956 15 H 0.032 0.968 16 C -0.511 4.511 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.116 3.884 25 C 0.080 3.920 26 C 0.199 3.801 27 N -0.334 5.334 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.152 0.848 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.035 0.965 39 H 0.096 0.904 40 H 0.259 0.741 41 H 0.054 0.946 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.527 22.504 -3.200 22.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.062 4.062 3 C -0.091 4.091 4 C -0.131 4.131 5 C -0.048 4.048 6 C -0.720 4.720 7 S 2.763 3.237 8 O -0.933 6.933 9 O -0.947 6.947 10 N -0.827 5.827 11 C -0.003 4.003 12 C -0.170 4.170 13 C -0.149 4.149 14 C 0.024 3.976 15 H 0.050 0.950 16 C -0.550 4.550 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.007 4.007 25 C 0.076 3.924 26 C -0.117 4.117 27 N -0.009 5.009 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.170 0.830 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.114 0.886 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.805 20.556 -3.818 20.923 hybrid contribution -0.955 0.310 0.499 1.121 sum -1.760 20.866 -3.319 21.201 Atomic orbital electron populations 1.20940 0.89772 1.03805 1.03557 1.20061 0.96718 0.91460 0.97968 1.21260 0.94417 0.97403 0.96050 1.21502 0.94317 0.98554 0.98776 1.20973 1.00998 0.90362 0.92480 1.31595 1.04300 1.22331 1.13798 1.02615 0.73890 0.73410 0.73798 1.93629 1.79003 1.65895 1.54814 1.93540 1.29948 1.84618 1.86590 1.57629 1.41579 1.56234 1.27284 1.21408 0.93114 0.98991 0.86738 1.21883 1.00076 0.95252 0.99830 1.21601 0.94101 0.99631 0.99527 1.18940 0.95962 0.89127 0.93608 0.94994 1.21121 0.92903 0.98096 1.42831 0.92344 1.24926 0.95637 0.97815 0.95426 1.69890 1.19408 1.18536 1.44936 0.86539 0.82996 0.80825 0.77672 1.19740 1.21012 1.21096 1.22232 0.85480 0.91046 1.01948 1.15271 0.89960 0.87328 0.99862 1.25566 0.96352 0.93419 0.96392 1.81337 1.06414 1.08329 1.04847 0.89916 0.90287 0.90975 0.84246 0.84248 0.83014 0.90093 0.91992 0.92260 0.92155 0.94612 0.88578 0.93061 0.92770 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.61 36.00 0.35 -0.63 16 2 C -0.06 -0.58 5.91 -104.21 -0.62 -1.19 16 3 C -0.07 -0.53 9.69 -39.64 -0.38 -0.91 16 4 C -0.11 -0.83 10.04 -39.49 -0.40 -1.23 16 5 C -0.03 -0.30 9.54 -39.64 -0.38 -0.68 16 6 C -0.63 -8.64 5.94 -39.17 -0.23 -8.88 16 7 S 2.67 46.80 5.19 -107.50 -0.56 46.24 16 8 O -0.94 -19.71 15.37 -57.17 -0.88 -20.59 16 9 O -0.96 -16.94 15.55 -57.17 -0.89 -17.83 16 10 N -0.99 -18.36 3.28 -113.77 -0.37 -18.73 16 11 C 0.12 2.01 6.45 -3.93 -0.03 1.98 16 12 C -0.13 -2.46 6.06 -26.84 -0.16 -2.62 16 13 C -0.11 -2.55 4.96 -26.69 -0.13 -2.68 16 14 C 0.04 1.12 2.25 -91.65 -0.21 0.91 16 15 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 16 C -0.51 -14.26 8.56 -34.44 -0.29 -14.56 16 17 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 18 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -25.46 11.32 55.43 0.63 -24.84 16 20 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 24 C 0.12 2.54 3.67 -3.71 -0.01 2.53 16 25 C 0.08 1.08 5.73 -106.93 -0.61 0.47 16 26 C 0.20 3.28 9.95 -22.47 -0.22 3.05 16 27 N -0.33 -6.37 15.94 41.84 0.67 -5.70 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.07 0.67 7.09 -51.93 -0.37 0.30 16 31 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 32 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.15 1.37 7.33 -52.49 -0.38 0.98 16 34 H 0.08 1.15 6.91 -51.93 -0.36 0.80 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 2.49 6.05 -51.93 -0.31 2.18 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.05 1.15 8.07 -51.93 -0.42 0.73 16 42 H 0.09 1.99 4.41 -51.93 -0.23 1.76 16 LS Contribution 350.16 15.07 5.28 5.28 Total: -1.00 -33.62 350.16 -9.99 -43.62 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.42 Total: -1.38 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -3.43 Total: -22.76 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.92 Total: -49.27 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -1.77 Total: -38.42 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 46.80 SS G_CDS: -0.56 Total: 46.24 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.62 -9.99 -43.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594800597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.035 kcal (2) G-P(sol) polarization free energy of solvation -33.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds