Wall clock time and date at job start Tue Mar 31 2020 17:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36178 * 119.56232 * 2 1 4 4 C 1.40390 * 119.61694 * 179.97438 * 3 2 1 5 5 C 1.40770 * 121.39266 * 180.02562 * 4 3 2 6 6 C 1.36585 * 118.15156 * 179.09121 * 5 4 3 7 7 C 1.39337 * 119.93280 * 0.93023 * 6 5 4 8 8 N 1.31081 * 121.75708 * 359.38814 * 7 6 5 9 9 C 1.33690 * 121.31844 * 359.97438 * 8 7 6 10 10 C 1.40554 * 121.07442 * 180.02562 * 9 8 7 11 11 S 1.76199 * 120.12527 * 359.94665 * 10 9 8 12 12 O 1.42103 * 106.39896 * 181.18815 * 11 10 9 13 13 O 1.42099 * 106.40277 * 48.26740 * 11 10 9 14 14 N 1.65594 * 107.21773 * 294.72882 * 11 10 9 15 15 C 1.46505 * 119.99845 * 269.99923 * 14 11 10 16 16 C 1.46500 * 120.00077 * 90.00156 * 14 11 10 17 17 H 1.09000 * 109.47175 * 359.97438 * 16 14 11 18 18 C 1.53006 * 109.46998 * 119.99765 * 16 14 11 19 19 C 1.50697 * 109.46896 * 239.99694 * 16 14 11 20 20 H 1.07994 * 120.00496 * 0.02562 * 19 16 14 21 21 C 1.37887 * 119.99690 * 179.97438 * 19 16 14 22 22 N 1.31507 * 120.00093 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 119.99676 * 180.02562 * 21 19 16 24 24 H 1.48508 * 109.47028 * 90.00202 * 23 21 19 25 25 H 1.48493 * 109.46961 * 209.99772 * 23 21 19 26 26 H 1.48498 * 109.47538 * 330.00225 * 23 21 19 27 27 C 1.36111 * 119.74524 * 179.67476 * 10 9 8 28 28 H 1.08999 * 109.47305 * 269.97283 * 1 2 3 29 29 H 1.08999 * 109.47193 * 29.98043 * 1 2 3 30 30 H 1.09005 * 109.46699 * 149.97588 * 1 2 3 31 31 H 1.08004 * 120.19304 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.91947 * 0.02562 * 5 4 3 33 33 H 1.07998 * 120.03424 * 180.27097 * 6 5 4 34 34 H 1.08000 * 119.12042 * 179.36651 * 7 6 5 35 35 H 1.09004 * 109.47130 * 270.00127 * 15 14 11 36 36 H 1.08997 * 109.47212 * 29.99879 * 15 14 11 37 37 H 1.09003 * 109.46772 * 150.00492 * 15 14 11 38 38 H 1.09001 * 109.47002 * 179.97438 * 18 16 14 39 39 H 1.08993 * 109.46955 * 300.00226 * 18 16 14 40 40 H 1.09000 * 109.47050 * 60.00054 * 18 16 14 41 41 H 0.96999 * 120.00118 * 179.97438 * 22 21 19 42 42 H 1.08002 * 119.46320 * 180.27173 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1788 1.1845 0.0000 4 6 3.5827 1.1858 0.0005 5 6 4.3149 2.3882 0.0011 6 6 5.6785 2.3123 0.0207 7 6 6.3057 1.0681 0.0198 8 7 5.6210 -0.0496 0.0124 9 6 4.2841 -0.0456 0.0059 10 6 3.5551 -1.2473 -0.0015 11 16 4.3993 -2.7939 -0.0037 12 8 3.3954 -3.7989 -0.0398 13 8 5.3838 -2.7150 1.0179 14 7 5.2209 -2.9018 -1.4374 15 6 4.5749 -3.4998 -2.6085 16 6 6.5936 -2.3994 -1.5347 17 1 6.9011 -1.9936 -0.5710 18 6 7.5290 -3.5444 -1.9284 19 6 6.6589 -1.3155 -2.5796 20 1 5.7671 -1.0292 -3.1172 21 6 7.8571 -0.6886 -2.8487 22 7 8.9429 -1.0362 -2.1930 23 14 7.9379 0.6555 -4.1434 24 1 7.6768 1.9718 -3.5074 25 1 9.2869 0.6645 -4.7640 26 1 6.9142 0.3988 -5.1881 27 6 2.1944 -1.2117 -0.0014 28 1 -0.3634 -0.0005 1.0276 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6348 2.1175 0.0004 32 1 3.8121 3.3440 0.0015 33 1 6.2701 3.2158 0.0261 34 1 7.3848 1.0235 0.0250 35 1 4.7722 -4.5717 -2.6246 36 1 3.4997 -3.3291 -2.5572 37 1 4.9725 -3.0436 -3.5152 38 1 8.5503 -3.1705 -2.0012 39 1 7.4817 -4.3284 -1.1727 40 1 7.2213 -3.9499 -2.8923 41 1 9.7859 -0.5954 -2.3826 42 1 1.6388 -2.1378 -0.0026 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609146196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:02 Heat of formation + Delta-G solvation = -10.840040 kcal Electronic energy + Delta-G solvation = -28216.264208 eV Core-core repulsion = 24481.686102 eV Total energy + Delta-G solvation = -3734.578106 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.56857 -37.41908 -36.42684 -35.98785 -35.07354 -33.40222 -32.49417 -31.87752 -30.19524 -28.94448 -27.04045 -25.39372 -25.06127 -23.95822 -22.59391 -22.45479 -20.57859 -18.09342 -17.95906 -17.10142 -16.82815 -16.43019 -16.26501 -15.53167 -15.09426 -14.58999 -14.34928 -14.24224 -13.96606 -13.40372 -13.32205 -13.31068 -13.05396 -12.71836 -12.56031 -12.35807 -12.18020 -11.86124 -11.62403 -11.40432 -11.29739 -11.24872 -11.19355 -11.09523 -10.86076 -10.83161 -10.59148 -10.40819 -10.31211 -10.08794 -9.94221 -9.13849 -8.89450 -8.51449 -8.33259 -8.22106 -7.79832 -5.98074 -4.01701 0.32102 1.05687 1.22268 2.06029 2.97104 3.23051 3.32290 3.35065 3.77883 4.30000 4.41044 4.44650 4.57935 4.64623 4.83471 4.95100 5.02732 5.12735 5.19357 5.32275 5.38954 5.40633 5.46986 5.57362 5.74286 5.75647 5.91486 5.99901 6.13277 6.18860 6.26158 6.29710 6.41674 6.44227 6.68134 6.78630 6.99646 7.01522 7.07093 7.30157 7.63372 7.75990 8.03865 8.18418 8.37945 8.41952 8.98168 9.60052 11.07197 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.011140 B = 0.006965 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.959416 B = 4018.886546 C = 5425.487462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.122 4.122 3 C -0.047 4.047 4 C -0.124 4.124 5 C -0.063 4.063 6 C -0.177 4.177 7 C 0.170 3.830 8 N -0.434 5.434 9 C 0.204 3.796 10 C -0.644 4.644 11 S 2.693 3.307 12 O -0.986 6.986 13 O -0.944 6.944 14 N -0.974 5.974 15 C 0.105 3.895 16 C 0.267 3.733 17 H 0.084 0.916 18 C -0.146 4.146 19 C -0.500 4.500 20 H 0.053 0.947 21 C 0.068 3.932 22 N -0.886 5.886 23 Si 0.879 3.121 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.278 1.278 27 C 0.006 3.994 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.165 0.835 35 H 0.045 0.955 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.011 0.989 40 H 0.028 0.972 41 H 0.260 0.740 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.128 5.901 3.236 13.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.123 4.123 3 C -0.066 4.066 4 C -0.127 4.127 5 C -0.089 4.089 6 C -0.197 4.197 7 C -0.002 4.002 8 N -0.140 5.140 9 C 0.081 3.919 10 C -0.728 4.728 11 S 2.781 3.219 12 O -0.976 6.976 13 O -0.934 6.934 14 N -0.814 5.814 15 C -0.042 4.042 16 C 0.165 3.835 17 H 0.101 0.899 18 C -0.206 4.206 19 C -0.540 4.540 20 H 0.071 0.929 21 C -0.133 4.133 22 N -0.526 5.526 23 Si 0.707 3.293 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.015 4.015 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.182 0.818 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.030 0.970 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.608 4.476 3.905 13.040 hybrid contribution -0.546 2.545 -1.323 2.919 sum -12.154 7.021 2.583 14.272 Atomic orbital electron populations 1.20804 0.90509 1.03072 1.02477 1.19703 0.96541 0.93032 1.03028 1.21028 0.92606 0.97921 0.95063 1.18837 0.94498 0.94498 1.04866 1.21321 0.94344 0.96923 0.96270 1.21984 0.95333 0.99949 1.02452 1.23085 1.01162 0.86665 0.89268 1.68270 1.04842 1.30843 1.10085 1.18090 0.89923 0.90660 0.93238 1.31075 1.04715 1.21129 1.15887 1.01959 0.72780 0.73109 0.74071 1.93489 1.61259 1.55423 1.87473 1.93559 1.58130 1.86433 1.55250 1.57365 1.25343 1.73142 1.25569 1.21217 0.95334 0.97220 0.90418 1.18902 0.73528 0.91231 0.99844 0.89854 1.22097 1.03935 0.97037 0.97489 1.21254 0.94297 1.18172 1.20288 0.92883 1.24756 0.95749 0.96792 0.96049 1.69880 0.99469 1.41897 1.41325 0.86811 0.77262 0.82746 0.82449 1.20850 1.21261 1.20305 1.20721 0.92370 0.98757 0.89677 0.91061 0.91454 0.91127 0.85248 0.84887 0.84731 0.81778 0.93670 0.93344 0.90259 0.88893 0.97000 0.95248 0.92982 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.98 36.00 0.36 -0.67 16 2 C -0.12 -1.62 5.84 -104.96 -0.61 -2.23 16 3 C -0.05 -0.63 9.38 -39.51 -0.37 -1.00 16 4 C -0.12 -2.02 5.74 -106.80 -0.61 -2.63 16 5 C -0.06 -0.87 9.90 -39.22 -0.39 -1.26 16 6 C -0.18 -2.62 10.03 -39.77 -0.40 -3.02 16 7 C 0.17 3.18 11.15 -17.46 -0.19 2.98 16 8 N -0.43 -9.28 6.38 -10.97 -0.07 -9.35 16 9 C 0.20 4.04 6.56 -84.85 -0.56 3.48 16 10 C -0.64 -12.40 5.91 -39.47 -0.23 -12.63 16 11 S 2.69 57.51 5.24 -107.50 -0.56 56.94 16 12 O -0.99 -20.76 16.01 -57.17 -0.92 -21.68 16 13 O -0.94 -22.88 15.87 -57.17 -0.91 -23.79 16 14 N -0.97 -21.31 3.06 -115.84 -0.35 -21.67 16 15 C 0.10 1.96 9.28 59.85 0.56 2.52 16 16 C 0.27 6.58 1.86 -69.08 -0.13 6.45 16 17 H 0.08 2.26 5.74 -51.93 -0.30 1.96 16 18 C -0.15 -3.52 8.97 37.16 0.33 -3.18 16 19 C -0.50 -12.69 7.24 -34.44 -0.25 -12.94 16 20 H 0.05 1.37 7.33 -52.49 -0.38 0.99 16 21 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 22 N -0.89 -23.44 11.32 55.43 0.63 -22.81 16 23 Si 0.88 20.17 29.54 -169.99 -5.02 15.15 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.01 0.09 9.11 -39.95 -0.36 -0.27 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 30 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 34 H 0.17 2.99 8.06 -52.49 -0.42 2.57 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.79 7.79 -51.93 -0.40 0.39 16 37 H 0.08 1.51 7.02 -51.93 -0.36 1.14 16 38 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 39 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 41 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 42 H 0.14 2.03 7.26 -52.49 -0.38 1.65 16 LS Contribution 355.02 15.07 5.35 5.35 Total: -1.00 -31.79 355.02 -10.29 -42.09 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.48 Total: 2.53 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -2.96 Total: -22.77 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.20 Total: -53.82 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -1.82 Total: -45.47 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 57.51 SS G_CDS: -0.56 Total: 56.94 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.79 -10.29 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609146196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.246 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds