Wall clock time and date at job start Tue Mar 31 2020 17:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36178 * 119.56232 * 2 1 4 4 C 1.40390 * 119.61694 * 179.97438 * 3 2 1 5 5 C 1.40770 * 121.39266 * 180.02562 * 4 3 2 6 6 C 1.36585 * 118.15156 * 179.09121 * 5 4 3 7 7 C 1.39337 * 119.93280 * 0.93023 * 6 5 4 8 8 N 1.31081 * 121.75708 * 359.38814 * 7 6 5 9 9 C 1.33690 * 121.31844 * 359.97438 * 8 7 6 10 10 C 1.40554 * 121.07442 * 180.02562 * 9 8 7 11 11 S 1.76199 * 120.12527 * 359.94665 * 10 9 8 12 12 O 1.42103 * 106.39896 * 181.18815 * 11 10 9 13 13 O 1.42099 * 106.40277 * 48.26740 * 11 10 9 14 14 N 1.65594 * 107.21773 * 294.72882 * 11 10 9 15 15 C 1.46505 * 119.99845 * 269.99923 * 14 11 10 16 16 C 1.46500 * 120.00077 * 90.00156 * 14 11 10 17 17 H 1.09000 * 109.47175 * 359.97438 * 16 14 11 18 18 C 1.53006 * 109.46998 * 119.99765 * 16 14 11 19 19 C 1.50697 * 109.46896 * 239.99694 * 16 14 11 20 20 H 1.07994 * 120.00496 * 0.02562 * 19 16 14 21 21 C 1.37887 * 119.99690 * 179.97438 * 19 16 14 22 22 N 1.31507 * 120.00093 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 119.99676 * 180.02562 * 21 19 16 24 24 H 1.48508 * 109.47028 * 90.00202 * 23 21 19 25 25 H 1.48493 * 109.46961 * 209.99772 * 23 21 19 26 26 H 1.48498 * 109.47538 * 330.00225 * 23 21 19 27 27 C 1.36111 * 119.74524 * 179.67476 * 10 9 8 28 28 H 1.08999 * 109.47305 * 269.97283 * 1 2 3 29 29 H 1.08999 * 109.47193 * 29.98043 * 1 2 3 30 30 H 1.09005 * 109.46699 * 149.97588 * 1 2 3 31 31 H 1.08004 * 120.19304 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.91947 * 0.02562 * 5 4 3 33 33 H 1.07998 * 120.03424 * 180.27097 * 6 5 4 34 34 H 1.08000 * 119.12042 * 179.36651 * 7 6 5 35 35 H 1.09004 * 109.47130 * 270.00127 * 15 14 11 36 36 H 1.08997 * 109.47212 * 29.99879 * 15 14 11 37 37 H 1.09003 * 109.46772 * 150.00492 * 15 14 11 38 38 H 1.09001 * 109.47002 * 179.97438 * 18 16 14 39 39 H 1.08993 * 109.46955 * 300.00226 * 18 16 14 40 40 H 1.09000 * 109.47050 * 60.00054 * 18 16 14 41 41 H 0.96999 * 120.00118 * 179.97438 * 22 21 19 42 42 H 1.08002 * 119.46320 * 180.27173 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1788 1.1845 0.0000 4 6 3.5827 1.1858 0.0005 5 6 4.3149 2.3882 0.0011 6 6 5.6785 2.3123 0.0207 7 6 6.3057 1.0681 0.0198 8 7 5.6210 -0.0496 0.0124 9 6 4.2841 -0.0456 0.0059 10 6 3.5551 -1.2473 -0.0015 11 16 4.3993 -2.7939 -0.0037 12 8 3.3954 -3.7989 -0.0398 13 8 5.3838 -2.7150 1.0179 14 7 5.2209 -2.9018 -1.4374 15 6 4.5749 -3.4998 -2.6085 16 6 6.5936 -2.3994 -1.5347 17 1 6.9011 -1.9936 -0.5710 18 6 7.5290 -3.5444 -1.9284 19 6 6.6589 -1.3155 -2.5796 20 1 5.7671 -1.0292 -3.1172 21 6 7.8571 -0.6886 -2.8487 22 7 8.9429 -1.0362 -2.1930 23 14 7.9379 0.6555 -4.1434 24 1 7.6768 1.9718 -3.5074 25 1 9.2869 0.6645 -4.7640 26 1 6.9142 0.3988 -5.1881 27 6 2.1944 -1.2117 -0.0014 28 1 -0.3634 -0.0005 1.0276 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6348 2.1175 0.0004 32 1 3.8121 3.3440 0.0015 33 1 6.2701 3.2158 0.0261 34 1 7.3848 1.0235 0.0250 35 1 4.7722 -4.5717 -2.6246 36 1 3.4997 -3.3291 -2.5572 37 1 4.9725 -3.0436 -3.5152 38 1 8.5503 -3.1705 -2.0012 39 1 7.4817 -4.3284 -1.1727 40 1 7.2213 -3.9499 -2.8923 41 1 9.7859 -0.5954 -2.3826 42 1 1.6388 -2.1378 -0.0026 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609146196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:01 Heat of formation + Delta-G solvation = -31.046492 kcal Electronic energy + Delta-G solvation = -28217.140426 eV Core-core repulsion = 24481.686102 eV Total energy + Delta-G solvation = -3735.454324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.76921 -38.66355 -38.04650 -37.77564 -36.81114 -34.60167 -34.40495 -32.94321 -31.39579 -30.82991 -27.99576 -27.16174 -26.93824 -25.16129 -23.81657 -23.62523 -22.45492 -19.68663 -19.16262 -18.58624 -18.22004 -18.17494 -17.87735 -16.88203 -16.80461 -16.29850 -15.55706 -15.48299 -15.20390 -15.05610 -14.81357 -14.39151 -14.30600 -14.17807 -13.81526 -13.65684 -13.43460 -13.31704 -13.15061 -13.06520 -13.04274 -12.93321 -12.71267 -12.66014 -12.37981 -12.32530 -12.15978 -12.04933 -12.00662 -11.79885 -11.58805 -11.03659 -10.40314 -10.13350 -9.72786 -9.57886 -9.34825 -7.95600 -6.04529 -0.87000 -0.37469 -0.14821 0.86472 1.39986 1.44398 1.50986 1.82009 2.17263 2.50093 2.79577 3.10577 3.32686 3.38823 3.44676 3.69888 3.82471 3.92302 4.03954 4.11578 4.18633 4.24083 4.36862 4.60629 4.70793 4.74180 4.78262 4.84297 4.88726 4.99427 5.01975 5.02937 5.06737 5.17892 5.20652 5.22638 5.34715 5.36689 5.60334 5.69926 5.79336 5.88969 6.09848 6.23377 6.44146 6.97938 7.10501 7.59281 9.09656 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.011140 B = 0.006965 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.959416 B = 4018.886546 C = 5425.487462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.124 4.124 3 C -0.030 4.030 4 C -0.140 4.140 5 C -0.045 4.045 6 C -0.181 4.181 7 C 0.145 3.855 8 N -0.484 5.484 9 C 0.171 3.829 10 C -0.675 4.675 11 S 2.699 3.301 12 O -0.992 6.992 13 O -0.987 6.987 14 N -0.985 5.985 15 C 0.099 3.901 16 C 0.276 3.724 17 H 0.053 0.947 18 C -0.141 4.141 19 C -0.495 4.495 20 H 0.045 0.955 21 C 0.032 3.968 22 N -0.911 5.911 23 Si 0.932 3.068 24 H -0.272 1.272 25 H -0.288 1.288 26 H -0.279 1.279 27 C 0.011 3.989 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.180 0.820 32 H 0.186 0.814 33 H 0.169 0.831 34 H 0.147 0.853 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.014 0.986 40 H 0.038 0.962 41 H 0.260 0.740 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.593 8.862 2.479 18.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.125 4.125 3 C -0.048 4.048 4 C -0.143 4.143 5 C -0.071 4.071 6 C -0.201 4.201 7 C -0.027 4.027 8 N -0.192 5.192 9 C 0.048 3.952 10 C -0.764 4.764 11 S 2.792 3.208 12 O -0.983 6.983 13 O -0.977 6.977 14 N -0.824 5.824 15 C -0.047 4.047 16 C 0.173 3.827 17 H 0.070 0.930 18 C -0.200 4.200 19 C -0.535 4.535 20 H 0.063 0.937 21 C -0.167 4.167 22 N -0.552 5.552 23 Si 0.760 3.240 24 H -0.198 1.198 25 H -0.214 1.214 26 H -0.204 1.204 27 C -0.010 4.010 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.198 0.802 32 H 0.204 0.796 33 H 0.187 0.813 34 H 0.165 0.835 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.033 0.967 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.059 7.386 3.141 17.064 hybrid contribution 0.396 1.658 -1.029 1.991 sum -14.664 9.044 2.111 17.357 Atomic orbital electron populations 1.20907 0.87033 1.04686 1.03969 1.20164 0.98852 0.91825 1.01673 1.21590 0.91255 0.99982 0.91982 1.19235 0.96235 0.93990 1.04877 1.21885 0.93778 0.98088 0.93310 1.22226 0.96471 0.99268 1.02101 1.23137 1.00798 0.88226 0.90520 1.68124 1.06390 1.32596 1.12107 1.18366 0.89738 0.92322 0.94822 1.30553 1.05978 1.19362 1.20478 1.01324 0.72387 0.73822 0.73255 1.93460 1.60809 1.56569 1.87436 1.93496 1.59961 1.87456 1.56818 1.57254 1.24836 1.73803 1.26514 1.21395 0.96469 0.97673 0.89147 1.18531 0.75005 0.91070 0.98120 0.92954 1.22004 1.02864 0.97108 0.98065 1.21228 0.93919 1.18329 1.19991 0.93714 1.25302 0.95430 0.98434 0.97578 1.69998 0.99819 1.42862 1.42475 0.85961 0.76865 0.80981 0.80234 1.19789 1.21357 1.20436 1.21088 0.91191 1.00870 0.87890 0.89470 0.88941 0.90553 0.80235 0.79645 0.81336 0.83546 0.92520 0.91092 0.90750 0.90904 0.96690 0.94267 0.93055 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 9.98 71.24 0.71 -0.73 16 2 C -0.12 -2.80 5.84 -20.09 -0.12 -2.92 16 3 C -0.03 -0.64 9.38 22.31 0.21 -0.43 16 4 C -0.14 -4.19 5.74 -21.28 -0.12 -4.31 16 5 C -0.05 -1.08 9.90 22.50 0.22 -0.86 16 6 C -0.18 -5.04 10.03 22.15 0.22 -4.81 16 7 C 0.14 5.59 11.15 85.07 0.95 6.54 16 8 N -0.48 -21.67 6.38 -188.63 -1.20 -22.88 16 9 C 0.17 6.81 6.56 40.29 0.26 7.07 16 10 C -0.67 -26.24 5.91 22.34 0.13 -26.11 16 11 S 2.70 120.05 5.24 -56.49 -0.30 119.76 16 12 O -0.99 -42.56 16.01 -128.00 -2.05 -44.61 16 13 O -0.99 -51.27 15.87 -128.00 -2.03 -53.30 16 14 N -0.98 -44.68 3.06 -520.42 -1.59 -46.27 16 15 C 0.10 3.74 9.28 127.77 1.19 4.92 16 16 C 0.28 14.26 1.86 44.25 0.08 14.35 16 17 H 0.05 3.06 5.74 -2.39 -0.01 3.04 16 18 C -0.14 -7.09 8.97 71.98 0.65 -6.45 16 19 C -0.49 -25.89 7.24 25.60 0.19 -25.70 16 20 H 0.04 2.37 7.33 -2.91 -0.02 2.35 16 21 C 0.03 1.66 5.30 84.66 0.45 2.11 16 22 N -0.91 -50.05 11.32 21.45 0.24 -49.81 16 23 Si 0.93 41.69 29.54 68.60 2.03 43.72 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 C 0.01 0.32 9.11 22.03 0.20 0.52 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 0.80 8.07 -2.39 -0.02 0.78 16 30 H 0.08 0.95 8.08 -2.38 -0.02 0.93 16 31 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.19 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 34 H 0.15 5.83 8.06 -2.91 -0.02 5.81 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 2.31 7.79 -2.39 -0.02 2.29 16 37 H 0.07 2.86 7.02 -2.39 -0.02 2.84 16 38 H 0.07 3.96 6.07 -2.39 -0.01 3.95 16 39 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.04 1.83 7.67 -2.39 -0.02 1.81 16 41 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 42 H 0.15 4.15 7.26 -2.91 -0.02 4.13 16 Total: -1.00 -74.24 355.02 1.35 -72.89 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 1.04 Total: 17.31 kcal Atomic # 6 Polarization: -42.02 SS G_CDS: 5.22 Total: -36.80 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -2.55 Total: -118.96 kcal Atomic # 8 Polarization: -93.83 SS G_CDS: -4.08 Total: -97.91 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: 120.05 SS G_CDS: -0.30 Total: 119.76 kcal Total: -74.24 1.35 -72.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609146196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.840 kcal (2) G-P(sol) polarization free energy of solvation -74.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds