Wall clock time and date at job start Tue Mar 31 2020 17:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 110.99679 * 2 1 4 4 C 1.50694 * 109.47336 * 66.04585 * 3 2 1 5 5 H 1.08007 * 120.00273 * 359.97438 * 4 3 2 6 6 C 1.37885 * 120.00226 * 180.02562 * 4 3 2 7 7 N 1.31506 * 119.99718 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99973 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.47098 * 90.00054 * 8 6 4 10 10 H 1.48496 * 109.47056 * 209.99917 * 8 6 4 11 11 H 1.48505 * 109.47177 * 330.00132 * 8 6 4 12 12 C 1.46898 * 111.00345 * 236.04688 * 2 1 3 13 13 C 1.52999 * 109.46843 * 293.95110 * 12 2 1 14 14 H 1.09000 * 109.47172 * 60.00235 * 13 12 2 15 15 O 1.42897 * 109.47305 * 299.99488 * 13 12 2 16 16 C 1.53004 * 109.46840 * 179.97438 * 13 12 2 17 17 N 1.46901 * 109.46916 * 184.99885 * 16 13 12 18 18 C 1.46905 * 110.99870 * 180.02562 * 17 16 13 19 19 C 1.52993 * 109.47039 * 180.02562 * 18 17 16 20 20 C 1.53004 * 115.55048 * 325.66948 * 19 18 17 21 21 C 1.52997 * 117.50086 * 111.37847 * 19 18 17 22 22 C 1.53003 * 117.49922 * 180.02562 * 19 18 17 23 23 H 1.09002 * 117.49939 * 145.02221 * 22 19 18 24 24 Br 1.96596 * 117.49822 * 359.97438 * 22 19 18 25 25 H 1.09007 * 109.46899 * 183.95409 * 1 2 3 26 26 H 1.08995 * 109.47385 * 303.94995 * 1 2 3 27 27 H 1.09004 * 109.47400 * 63.95966 * 1 2 3 28 28 H 1.09002 * 109.47174 * 186.04502 * 3 2 1 29 29 H 1.09002 * 109.47291 * 306.04236 * 3 2 1 30 30 H 0.97006 * 120.00144 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47045 * 173.95267 * 12 2 1 32 32 H 1.08997 * 109.47053 * 53.95038 * 12 2 1 33 33 H 0.96693 * 114.00429 * 300.00720 * 15 13 12 34 34 H 1.09004 * 109.46889 * 65.00266 * 16 13 12 35 35 H 1.08995 * 109.47384 * 304.99906 * 16 13 12 36 36 H 1.00901 * 111.00067 * 303.95263 * 17 16 13 37 37 H 1.09001 * 109.46798 * 300.00327 * 18 17 16 38 38 H 1.08998 * 109.46961 * 60.00043 * 18 17 16 39 39 H 1.08997 * 109.47133 * 34.41941 * 20 19 18 40 40 H 1.09000 * 109.46842 * 154.42138 * 20 19 18 41 41 H 1.09003 * 109.46738 * 274.41795 * 20 19 18 42 42 H 1.08997 * 117.50206 * 214.97900 * 21 19 18 43 43 H 1.08998 * 117.49863 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0738 1.5115 2.0485 6 6 2.0266 3.3496 1.5284 7 7 2.7108 4.0023 0.6145 8 14 1.5815 4.1874 3.1376 9 1 2.6582 3.9514 4.1329 10 1 1.4289 5.6468 2.9101 11 1 0.3037 3.6298 3.6491 12 6 1.9955 -0.7659 -1.1376 13 6 1.6316 -2.2426 -0.9702 14 1 0.5473 -2.3475 -0.9323 15 8 2.2011 -2.7391 0.2426 16 6 2.1794 -3.0402 -2.1554 17 7 1.7290 -4.4350 -2.0569 18 6 2.2376 -5.2330 -3.1806 19 6 1.7482 -6.6761 -3.0440 20 6 1.6254 -7.1984 -1.6111 21 6 0.7278 -7.1761 -4.0684 22 6 2.1746 -7.6720 -4.1244 23 1 2.3668 -8.6992 -3.8145 24 35 3.3088 -6.9991 -5.5825 25 1 -0.3633 -1.0253 0.0709 26 1 -0.3634 0.5739 0.8524 27 1 -0.3634 0.4512 -0.9234 28 1 3.0796 1.3445 -0.1082 29 1 1.5610 1.9274 -0.8310 30 1 2.9854 4.9185 0.7764 31 1 3.0798 -0.6610 -1.1755 32 1 1.5611 -0.3872 -2.0627 33 1 3.1653 -2.6770 0.2787 34 1 3.2689 -3.0085 -2.1422 35 1 1.8145 -2.6054 -3.0859 36 1 1.9998 -4.8410 -1.1738 37 1 1.8734 -4.8134 -4.1184 38 1 3.3275 -5.2164 -3.1741 39 1 1.3152 -6.3863 -0.9537 40 1 0.8838 -7.9965 -1.5776 41 1 2.5899 -7.5847 -1.2813 42 1 -0.0314 -7.8771 -3.7218 43 1 0.4054 -6.4770 -4.8401 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857240994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:40 Heat of formation + Delta-G solvation = -41.642424 kcal Electronic energy + Delta-G solvation = -20924.187453 eV Core-core repulsion = 17664.493344 eV Total energy + Delta-G solvation = -3259.694110 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 334.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.95837 -39.23419 -37.27950 -35.51625 -34.61571 -31.60055 -31.01219 -29.33260 -28.88037 -27.90351 -26.36048 -24.49231 -22.96285 -22.62480 -21.78989 -19.91350 -18.56982 -17.66165 -17.20805 -16.75112 -16.65743 -16.14395 -15.85620 -15.71262 -15.45509 -15.01462 -14.56786 -14.41437 -13.86980 -13.72891 -13.57359 -13.26164 -13.10483 -13.06447 -12.77105 -12.56637 -12.53181 -12.42852 -12.37073 -12.19470 -12.12238 -11.99407 -11.60306 -11.40715 -11.34118 -10.74846 -10.61897 -10.58226 -10.39409 -9.37805 -8.96179 -8.20874 -6.30682 0.70381 1.41281 1.42813 1.54064 2.39817 2.43681 2.93705 3.11665 3.38587 3.63182 3.65516 3.70936 3.79184 4.01303 4.07872 4.14942 4.27135 4.43627 4.47523 4.56558 4.64195 4.70046 4.74257 4.78656 4.82019 4.86792 4.95867 4.99128 5.07457 5.10131 5.15961 5.17935 5.32573 5.39648 5.64806 5.97165 6.05641 6.32522 6.43508 6.63546 6.85524 6.96110 7.39052 8.90201 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.031283 B = 0.001955 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.848218 B =14321.012439 C =14831.291213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.538 5.538 3 C 0.207 3.793 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.970 3.030 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.265 1.265 12 C 0.024 3.976 13 C 0.131 3.869 14 H 0.097 0.903 15 O -0.559 6.559 16 C 0.037 3.963 17 N -0.683 5.683 18 C 0.095 3.905 19 C -0.101 4.101 20 C -0.120 4.120 21 C -0.140 4.140 22 C -0.120 4.120 23 H 0.152 0.848 24 Br -0.142 7.142 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.010 0.990 28 H 0.004 0.996 29 H -0.040 1.040 30 H 0.264 0.736 31 H 0.067 0.933 32 H 0.031 0.969 33 H 0.379 0.621 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.351 0.649 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.125 0.875 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.831 -28.357 -12.055 30.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.262 5.262 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.189 1.189 12 C -0.106 4.106 13 C 0.071 3.929 14 H 0.114 0.886 15 O -0.364 6.364 16 C -0.093 4.093 17 N -0.317 5.317 18 C -0.034 4.034 19 C -0.102 4.102 20 C -0.178 4.178 21 C -0.177 4.177 22 C -0.216 4.216 23 H 0.170 0.830 24 Br -0.060 7.060 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.028 0.972 28 H 0.022 0.978 29 H -0.022 1.022 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.227 0.773 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.173 0.827 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.143 0.857 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.424 -28.187 -12.320 30.795 hybrid contribution 1.139 1.273 -0.067 1.709 sum -0.285 -26.914 -12.387 29.629 Atomic orbital electron populations 1.22222 0.87860 1.01125 0.99554 1.61937 1.07957 1.14765 1.41510 1.19402 0.93629 0.84006 0.94911 1.21470 1.34767 0.97464 1.02362 0.92031 1.25924 0.95054 0.98045 1.00738 1.70081 1.39495 1.11916 1.36126 0.85376 0.78993 0.77221 0.78989 1.19790 1.20724 1.18896 1.22826 1.00193 0.95485 0.92067 1.21746 0.98646 0.88849 0.83682 0.88559 1.86552 1.26114 1.84698 1.39072 1.22501 0.97973 0.89682 0.99115 1.60474 1.63652 1.01429 1.06118 1.21476 0.96810 0.90464 0.94668 1.21724 1.02200 0.93179 0.93119 1.21427 1.02651 1.01661 0.92013 1.23603 0.90383 1.02929 1.00827 1.25932 0.97975 1.01757 0.95934 0.83022 1.97369 1.69778 1.89156 1.49737 0.90484 0.92678 0.97170 0.97803 1.02237 0.92683 0.91456 0.95065 0.77309 0.94164 0.90191 0.82716 0.91046 0.94661 0.90823 0.90694 0.91516 0.85667 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 9.14 127.69 1.17 2.78 16 2 N -0.54 -23.47 4.62 -927.07 -4.28 -27.75 16 3 C 0.21 11.20 4.72 85.56 0.40 11.60 16 4 C -0.52 -30.14 8.46 25.60 0.22 -29.93 16 5 H 0.06 3.51 7.12 -2.91 -0.02 3.49 16 6 C 0.00 0.01 5.46 84.66 0.46 0.47 16 7 N -0.94 -56.84 13.29 21.45 0.28 -56.56 16 8 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 12 C 0.02 0.81 4.62 86.30 0.40 1.20 16 13 C 0.13 3.52 3.07 30.60 0.09 3.61 16 14 H 0.10 2.76 6.55 -2.39 -0.02 2.75 16 15 O -0.56 -15.70 12.72 -148.98 -1.90 -17.60 16 16 C 0.04 0.80 5.36 86.30 0.46 1.26 16 17 N -0.68 -12.96 6.11 -513.88 -3.14 -16.10 16 18 C 0.10 1.60 4.76 86.30 0.41 2.01 16 19 C -0.10 -1.32 2.57 -52.18 -0.13 -1.45 16 20 C -0.12 -1.35 9.52 71.98 0.69 -0.67 16 21 C -0.14 -1.58 9.64 30.61 0.30 -1.29 16 22 C -0.12 -1.43 6.70 30.61 0.21 -1.23 16 23 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 24 Br -0.14 -2.27 33.01 -20.37 -0.67 -2.94 16 25 H 0.08 2.60 6.47 -2.38 -0.02 2.59 16 26 H 0.05 2.38 6.76 -2.39 -0.02 2.36 16 27 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.00 0.22 7.93 -2.39 -0.02 0.21 16 29 H -0.04 -2.35 8.12 -2.39 -0.02 -2.37 16 30 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 31 H 0.07 2.30 7.93 -2.39 -0.02 2.28 16 32 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 33 H 0.38 8.66 9.05 -74.06 -0.67 7.99 16 34 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 36 H 0.35 6.48 6.11 -89.69 -0.55 5.93 16 37 H 0.07 1.31 7.85 -2.39 -0.02 1.29 16 38 H 0.04 0.63 8.10 -2.39 -0.02 0.61 16 39 H 0.07 1.00 5.84 -2.39 -0.01 0.99 16 40 H 0.07 0.66 7.90 -2.39 -0.02 0.64 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.13 1.00 8.05 -2.39 -0.02 0.98 16 43 H 0.10 1.30 8.05 -2.39 -0.02 1.28 16 Total: -1.00 -65.83 363.60 -3.23 -69.07 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -0.22 Total: 16.69 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 4.67 Total: -11.62 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -7.14 Total: -100.41 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -1.90 Total: -17.60 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 35 Polarization: -2.27 SS G_CDS: -0.67 Total: -2.94 kcal Total: -65.83 -3.23 -69.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857240994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.423 kcal (2) G-P(sol) polarization free energy of solvation -65.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds