Wall clock time and date at job start Tue Mar 31 2020 17:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86804 * 119.99900 * 2 1 4 4 H 1.48498 * 109.46918 * 239.99789 * 3 2 1 5 5 H 1.48490 * 109.47208 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46782 * 120.00118 * 3 2 1 7 7 C 1.40307 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00142 * 170.14924 * 7 2 1 9 9 C 1.40533 * 119.99866 * 350.14441 * 7 2 1 10 10 C 1.44191 * 123.71842 * 336.49764 * 9 7 2 11 11 C 1.32765 * 114.42896 * 180.24564 * 10 9 7 12 12 S 1.75472 * 111.36596 * 359.59122 * 11 10 9 13 13 C 1.39552 * 123.71171 * 156.46643 * 9 7 2 14 14 C 1.46232 * 125.23006 * 0.02619 * 13 9 7 15 15 O 1.21759 * 119.99800 * 359.97438 * 14 13 9 16 16 N 1.34780 * 120.00458 * 179.97438 * 14 13 9 17 17 C 1.46496 * 120.00478 * 179.97438 * 16 14 13 18 18 H 1.09004 * 110.43046 * 327.54216 * 17 16 14 19 19 C 1.54708 * 110.48716 * 205.00071 * 17 16 14 20 20 C 1.54046 * 101.54851 * 216.60335 * 19 17 16 21 21 H 1.09005 * 109.81778 * 267.36943 * 20 19 17 22 22 C 1.52232 * 110.56483 * 145.84248 * 20 19 17 23 23 C 1.52695 * 110.35894 * 197.17064 * 22 20 19 24 24 C 1.52857 * 110.28131 * 60.55600 * 23 22 20 25 25 C 1.53115 * 109.56552 * 296.19138 * 24 23 22 26 26 N 1.46548 * 105.95041 * 25.91131 * 20 19 17 27 27 C 1.34788 * 110.76817 * 342.15252 * 26 20 19 28 28 O 1.21283 * 124.87572 * 181.17712 * 27 26 20 29 29 H 0.97006 * 119.99642 * 0.02562 * 1 2 3 30 30 H 1.07994 * 122.78262 * 359.97305 * 10 9 7 31 31 H 1.08006 * 124.31373 * 179.72865 * 11 10 9 32 32 H 0.96999 * 119.99577 * 359.97438 * 16 14 13 33 33 H 1.09000 * 111.00736 * 334.66282 * 19 17 16 34 34 H 1.09003 * 111.01170 * 98.53413 * 19 17 16 35 35 H 1.08994 * 109.31769 * 317.44324 * 22 20 19 36 36 H 1.09000 * 109.32207 * 76.89686 * 22 20 19 37 37 H 1.09002 * 109.33404 * 300.30228 * 23 22 20 38 38 H 1.09005 * 109.33070 * 180.80477 * 23 22 20 39 39 H 1.08995 * 109.45646 * 176.15638 * 24 23 22 40 40 H 1.09003 * 109.43895 * 56.20451 * 24 23 22 41 41 H 1.08998 * 109.63789 * 291.48209 * 25 24 23 42 42 H 1.08999 * 109.64135 * 170.87262 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2755 2.7464 0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0079 -1.2151 -0.0005 8 1 3.0760 -1.2220 -0.1606 9 6 1.3208 -2.4232 0.2072 10 6 0.0548 -2.5166 0.8912 11 6 -0.4271 -3.7499 0.9884 12 16 0.6416 -4.9156 0.2280 13 6 1.7882 -3.6646 -0.2263 14 6 3.0401 -3.8896 -0.9477 15 8 3.7662 -2.9494 -1.2148 16 7 3.3903 -5.1376 -1.3170 17 6 4.6443 -5.3629 -2.0402 18 1 4.8746 -4.5091 -2.6775 19 6 4.5591 -6.6588 -2.8809 20 6 5.9912 -7.2098 -2.7441 21 1 6.6041 -6.8557 -3.5730 22 6 5.9785 -8.7319 -2.7201 23 6 7.2988 -9.2655 -2.1692 24 6 7.5163 -8.7682 -0.7402 25 6 7.6486 -7.2428 -0.7427 26 7 6.5086 -6.6773 -1.4806 27 6 5.7753 -5.6234 -1.0702 28 8 5.9913 -4.9769 -0.0670 29 1 -0.4850 0.8401 -0.0004 30 1 -0.4566 -1.6554 1.2950 31 1 -1.3592 -4.0031 1.4717 32 1 2.8121 -5.8866 -1.1038 33 1 3.8318 -7.3518 -2.4581 34 1 4.3242 -6.4349 -3.9215 35 1 5.1590 -9.0757 -2.0890 36 1 5.8321 -9.1073 -3.7329 37 1 8.1184 -8.9212 -2.7999 38 1 7.2771 -10.3553 -2.1727 39 1 8.4267 -9.2110 -0.3363 40 1 6.6665 -9.0578 -0.1220 41 1 8.5798 -6.9567 -1.2317 42 1 7.6412 -6.8727 0.2825 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868829314.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:39 Heat of formation + Delta-G solvation = -53.242466 kcal Electronic energy + Delta-G solvation = -26451.828258 eV Core-core repulsion = 22715.411445 eV Total energy + Delta-G solvation = -3736.416813 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83747 -38.17618 -37.15733 -36.03762 -35.00218 -33.02160 -32.95179 -32.16149 -29.21893 -28.39112 -26.69182 -25.85052 -23.38848 -22.21253 -21.91753 -20.97130 -20.19772 -18.86266 -18.73339 -17.70367 -16.62372 -16.29341 -15.87690 -15.49953 -15.11969 -14.82477 -14.56767 -14.27105 -14.14473 -13.75685 -13.63184 -13.45982 -13.19618 -12.85568 -12.52941 -12.42198 -12.36896 -12.01739 -11.79107 -11.47675 -11.41114 -11.38072 -11.13885 -11.08579 -10.94790 -10.90050 -10.70464 -10.42540 -10.09760 -9.81519 -9.59610 -9.22103 -8.63460 -8.40514 -8.19396 -7.45496 -7.10382 -7.00928 -4.48661 2.19878 2.76503 3.01840 3.03150 3.04522 3.08494 3.16063 3.67010 3.83983 3.89625 4.00123 4.25873 4.37533 4.53460 4.55455 4.70328 4.75746 4.88394 4.99201 5.07714 5.21854 5.30969 5.33183 5.50580 5.52124 5.63129 5.68716 5.74013 5.74969 5.84027 5.93420 6.06934 6.08261 6.62656 6.67493 6.87420 7.13518 7.20009 7.24237 7.28610 7.50507 7.73748 8.39323 8.43513 8.47192 8.63800 8.81436 9.62478 9.90160 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.003304 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.032648 B = 8473.298098 C = 9436.416621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.068 3.932 3 Si 0.926 3.074 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.376 4.376 8 H 0.112 0.888 9 C 0.141 3.859 10 C -0.098 4.098 11 C -0.206 4.206 12 S -0.054 6.054 13 C -0.427 4.427 14 C 0.605 3.395 15 O -0.553 6.553 16 N -0.732 5.732 17 C 0.127 3.873 18 H 0.121 0.879 19 C -0.134 4.134 20 C 0.137 3.863 21 H 0.079 0.921 22 C -0.127 4.127 23 C -0.118 4.118 24 C -0.135 4.135 25 C 0.128 3.872 26 N -0.623 5.623 27 C 0.502 3.498 28 O -0.504 6.504 29 H 0.288 0.712 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.392 0.608 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.972 -14.957 -5.646 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.154 4.154 3 Si 0.749 3.251 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.407 4.407 8 H 0.130 0.870 9 C 0.130 3.870 10 C -0.130 4.130 11 C -0.339 4.339 12 S 0.200 5.800 13 C -0.546 4.546 14 C 0.402 3.598 15 O -0.434 6.434 16 N -0.386 5.386 17 C 0.017 3.983 18 H 0.138 0.862 19 C -0.173 4.173 20 C 0.033 3.967 21 H 0.097 0.903 22 C -0.165 4.165 23 C -0.156 4.156 24 C -0.173 4.173 25 C 0.006 3.994 26 N -0.361 5.361 27 C 0.287 3.713 28 O -0.376 6.376 29 H 0.099 0.901 30 H 0.163 0.837 31 H 0.155 0.845 32 H 0.227 0.773 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.401 -15.294 -5.431 18.275 hybrid contribution -0.082 1.636 0.304 1.666 sum 8.318 -13.658 -5.127 16.794 Atomic orbital electron populations 1.69669 1.08061 1.30419 1.32177 1.26379 0.94937 1.02574 0.91498 0.86048 0.79932 0.78284 0.80844 1.18218 1.20151 1.18320 1.20034 0.97800 0.88791 1.34052 0.87031 1.17912 0.89469 0.91784 0.87797 1.21729 0.96342 0.96058 0.98875 1.24924 1.03405 0.96895 1.08714 1.82630 1.18340 1.14288 1.64715 1.22508 1.05126 0.95561 1.31427 1.16832 0.84400 0.80999 0.77529 1.90662 1.53658 1.41471 1.57645 1.45649 1.20862 1.09948 1.62116 1.21300 0.85297 0.98984 0.92768 0.86190 1.22986 0.95980 0.96364 1.01956 1.21306 0.94619 0.94207 0.86603 0.90343 1.21687 0.98540 0.94104 1.02171 1.21351 0.97537 1.00465 0.96204 1.21853 1.02660 0.95298 0.97494 1.21467 0.87759 0.92823 0.97324 1.48515 1.31952 1.31979 1.23632 1.21755 0.83618 0.79464 0.86457 1.90738 1.70766 1.49959 1.26126 0.90077 0.83702 0.84498 0.77332 0.89399 0.88448 0.91179 0.90445 0.91781 0.91537 0.90685 0.91368 0.91830 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.15 10.81 55.57 0.60 -18.55 16 2 C 0.07 1.69 5.39 -17.28 -0.09 1.60 16 3 Si 0.93 19.15 29.57 -169.99 -5.03 14.12 16 4 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.38 -10.49 8.51 -37.94 -0.32 -10.81 16 8 H 0.11 3.30 6.04 -52.49 -0.32 2.98 16 9 C 0.14 3.89 5.68 -106.21 -0.60 3.29 16 10 C -0.10 -2.43 9.04 -39.12 -0.35 -2.79 16 11 C -0.21 -4.56 11.07 28.86 0.32 -4.24 16 12 S -0.05 -1.19 22.25 -107.50 -2.39 -3.58 16 13 C -0.43 -11.19 6.51 -35.88 -0.23 -11.43 16 14 C 0.61 15.45 7.76 -13.05 -0.10 15.35 16 15 O -0.55 -15.81 14.10 5.14 0.07 -15.73 16 16 N -0.73 -14.66 5.13 -55.23 -0.28 -14.94 16 17 C 0.13 2.12 3.28 -67.91 -0.22 1.89 16 18 H 0.12 2.16 7.55 -51.93 -0.39 1.77 16 19 C -0.13 -1.44 6.37 -25.29 -0.16 -1.60 16 20 C 0.14 1.33 3.57 -67.75 -0.24 1.08 16 21 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 22 C -0.13 -0.93 5.45 -27.28 -0.15 -1.08 16 23 C -0.12 -0.81 5.81 -26.96 -0.16 -0.96 16 24 C -0.13 -1.10 6.06 -26.74 -0.16 -1.26 16 25 C 0.13 1.41 6.80 -3.65 -0.02 1.38 16 26 N -0.62 -8.19 3.15 -165.10 -0.52 -8.71 16 27 C 0.50 9.10 7.68 -10.70 -0.08 9.02 16 28 O -0.50 -11.79 17.48 5.56 0.10 -11.69 16 29 H 0.29 6.36 8.29 -40.82 -0.34 6.02 16 30 H 0.15 3.57 6.40 -52.49 -0.34 3.23 16 31 H 0.14 2.56 8.06 -52.48 -0.42 2.14 16 32 H 0.39 7.10 7.51 -40.82 -0.31 6.79 16 33 H 0.09 0.88 7.37 -51.93 -0.38 0.49 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.55 7.77 -51.93 -0.40 0.15 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.09 7.72 -51.93 -0.40 0.69 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -33.71 354.63 -10.17 -43.88 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.48 Total: 10.40 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -2.59 Total: -0.55 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: -0.20 Total: -42.20 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: 0.17 Total: -27.42 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Atomic # 16 Polarization: -1.19 SS G_CDS: -2.39 Total: -3.58 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.71 -10.17 -43.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868829314.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.360 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds