Wall clock time and date at job start Tue Mar 31 2020 17:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86796 * 119.99927 * 2 1 4 4 H 1.48498 * 109.47195 * 240.00163 * 3 2 1 5 5 H 1.48501 * 109.47474 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.47034 * 120.00575 * 3 2 1 7 7 C 1.40310 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99459 * 191.12686 * 7 2 1 9 9 C 1.40533 * 120.00169 * 11.12198 * 7 2 1 10 10 C 1.44189 * 123.71638 * 21.20712 * 9 7 2 11 11 C 1.32762 * 114.43164 * 180.28989 * 10 9 7 12 12 S 1.75472 * 111.36252 * 359.73456 * 11 10 9 13 13 C 1.39544 * 123.71753 * 200.99832 * 9 7 2 14 14 C 1.46244 * 125.22479 * 359.97438 * 13 9 7 15 15 O 1.21765 * 119.99806 * 49.19967 * 14 13 9 16 16 N 1.34777 * 120.00221 * 229.19283 * 14 13 9 17 17 C 1.46849 * 120.42031 * 355.88041 * 16 14 13 18 18 C 1.53371 * 109.21210 * 127.55490 * 17 16 14 19 19 C 1.52802 * 108.82203 * 53.80210 * 18 17 16 20 20 H 1.09005 * 108.11403 * 56.19520 * 19 18 17 21 21 N 1.45402 * 111.44394 * 175.71525 * 19 18 17 22 22 C 1.33589 * 123.34258 * 143.56200 * 21 19 18 23 23 O 1.21287 * 118.07743 * 176.44208 * 22 21 19 24 24 C 1.50100 * 123.84543 * 356.42506 * 22 21 19 25 25 C 1.53157 * 110.37805 * 16.56853 * 24 22 21 26 26 C 1.52960 * 108.26839 * 312.80245 * 25 24 22 27 27 H 1.08995 * 109.50278 * 307.77913 * 26 25 24 28 28 C 1.47127 * 120.42101 * 175.90162 * 16 14 13 29 29 H 0.97004 * 119.99973 * 359.97438 * 1 2 3 30 30 H 1.08003 * 122.78310 * 0.03106 * 10 9 7 31 31 H 1.07997 * 124.31777 * 179.69802 * 11 10 9 32 32 H 1.08998 * 109.51277 * 247.47326 * 17 16 14 33 33 H 1.09003 * 109.51418 * 7.57852 * 17 16 14 34 34 H 1.08992 * 109.57889 * 293.99925 * 18 17 16 35 35 H 1.08999 * 109.57418 * 173.60391 * 18 17 16 36 36 H 0.97006 * 118.32593 * 323.54196 * 21 19 18 37 37 H 1.09002 * 109.31675 * 136.84680 * 24 22 21 38 38 H 1.08997 * 109.31744 * 256.47770 * 24 22 21 39 39 H 1.08999 * 109.71012 * 72.50066 * 25 24 22 40 40 H 1.09000 * 109.70164 * 193.11788 * 25 24 22 41 41 H 1.09002 * 109.72471 * 113.52596 * 28 16 14 42 42 H 1.08996 * 109.73044 * 352.85755 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0940 1.6964 -1.2125 5 1 1.2754 2.7465 0.0006 6 1 3.0942 1.6963 1.2125 7 6 2.0079 -1.2151 -0.0005 8 1 3.0727 -1.2239 0.1800 9 6 1.3250 -2.4207 -0.2358 10 6 0.0494 -2.5008 -0.9031 11 6 -0.4318 -3.7325 -1.0219 12 16 0.6590 -4.9151 -0.3215 13 6 1.8088 -3.6724 0.1468 14 6 3.0757 -3.9122 0.8368 15 8 3.3626 -3.2628 1.8261 16 7 3.9258 -4.8520 0.3778 17 6 3.5507 -5.7021 -0.7593 18 6 4.6562 -5.6420 -1.8207 19 6 5.9898 -5.9957 -1.1640 20 1 5.8878 -6.9745 -0.6954 21 7 7.0648 -6.0539 -2.1414 22 6 8.3118 -5.6484 -1.8864 23 8 9.1495 -5.8008 -2.7502 24 6 8.7371 -5.0150 -0.5938 25 6 7.6921 -5.2730 0.4957 26 6 6.3102 -4.9628 -0.0822 27 1 6.3150 -3.9651 -0.5211 28 6 5.2410 -5.0395 1.0099 29 1 -0.4850 0.8401 0.0004 30 1 -0.4735 -1.6307 -1.2719 31 1 -1.3745 -3.9754 -1.4894 32 1 3.4274 -6.7305 -0.4200 33 1 2.6140 -5.3452 -1.1875 34 1 4.7092 -4.6358 -2.2363 35 1 4.4393 -6.3564 -2.6149 36 1 6.8663 -6.4055 -3.0235 37 1 9.6933 -5.4361 -0.2834 38 1 8.8461 -3.9401 -0.7378 39 1 7.7347 -6.3170 0.8061 40 1 7.8861 -4.6264 1.3515 41 1 5.2802 -6.0147 1.4953 42 1 5.4105 -4.2542 1.7466 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869260125.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:17 Heat of formation + Delta-G solvation = -55.704296 kcal Electronic energy + Delta-G solvation = -26908.564722 eV Core-core repulsion = 23172.041155 eV Total energy + Delta-G solvation = -3736.523566 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.78722 -39.04467 -37.34906 -36.04370 -34.69773 -33.81960 -33.08320 -30.81884 -30.29621 -28.94419 -26.49875 -24.64537 -24.35706 -22.65544 -22.18623 -21.16443 -19.54696 -19.31598 -18.70644 -17.40119 -16.90495 -16.33945 -15.81311 -15.54783 -15.51933 -15.09254 -14.72735 -14.55155 -14.21041 -14.12047 -13.75372 -13.55274 -13.18218 -12.75360 -12.48927 -12.40071 -12.16247 -12.09599 -11.80250 -11.55842 -11.48935 -11.38921 -11.13227 -11.02471 -10.95229 -10.85050 -10.57890 -10.47025 -10.22873 -9.83392 -9.62903 -9.30219 -9.14719 -8.79365 -8.10580 -7.55502 -7.13697 -7.05983 -4.58071 2.17223 2.54609 2.94040 2.94527 2.97425 3.00408 3.15871 3.35899 3.62303 3.73897 3.83646 4.22646 4.39573 4.44300 4.55468 4.62692 5.00820 5.08063 5.14707 5.19336 5.32221 5.35222 5.43155 5.60916 5.66219 5.68319 5.79220 5.82454 5.88927 6.01475 6.10753 6.18831 6.32629 6.42631 6.68689 6.78074 7.08432 7.12113 7.18815 7.24163 7.38146 7.65691 8.11514 8.12705 8.26008 8.49196 8.62052 9.28279 9.85478 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.003982 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.877529 B = 7030.155946 C = 8168.392571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.395 4.395 8 H 0.086 0.914 9 C 0.144 3.856 10 C -0.095 4.095 11 C -0.218 4.218 12 S -0.026 6.026 13 C -0.441 4.441 14 C 0.623 3.377 15 O -0.550 6.550 16 N -0.625 5.625 17 C 0.105 3.895 18 C -0.141 4.141 19 C 0.143 3.857 20 H 0.071 0.929 21 N -0.712 5.712 22 C 0.521 3.479 23 O -0.567 6.567 24 C -0.134 4.134 25 C -0.117 4.117 26 C -0.114 4.114 27 H 0.086 0.914 28 C 0.126 3.874 29 H 0.288 0.712 30 H 0.147 0.853 31 H 0.137 0.863 32 H 0.057 0.943 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.398 0.602 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.904 -8.059 -2.435 10.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.147 4.147 3 Si 0.744 3.256 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.426 4.426 8 H 0.104 0.896 9 C 0.133 3.867 10 C -0.128 4.128 11 C -0.351 4.351 12 S 0.230 5.770 13 C -0.559 4.559 14 C 0.416 3.584 15 O -0.429 6.429 16 N -0.360 5.360 17 C -0.020 4.020 18 C -0.180 4.180 19 C 0.038 3.962 20 H 0.089 0.911 21 N -0.363 5.363 22 C 0.308 3.692 23 O -0.446 6.446 24 C -0.173 4.173 25 C -0.155 4.155 26 C -0.134 4.134 27 H 0.104 0.896 28 C 0.003 3.997 29 H 0.100 0.900 30 H 0.165 0.835 31 H 0.155 0.845 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.234 0.766 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.238 -9.072 -1.954 11.769 hybrid contribution 0.004 2.007 -0.560 2.083 sum 7.242 -7.066 -2.514 10.425 Atomic orbital electron populations 1.69631 1.07902 1.30326 1.32734 1.26170 0.94923 1.02120 0.91504 0.86135 0.80097 0.78868 0.80528 1.18497 1.19944 1.18345 1.19378 0.96582 0.89451 1.37193 0.89574 1.17784 0.89540 0.91205 0.88142 1.21744 0.96234 0.96276 0.98495 1.25053 1.03612 0.97185 1.09295 1.82826 1.15589 1.12816 1.65768 1.22408 1.04329 0.95345 1.33845 1.17056 0.82355 0.76796 0.82157 1.90686 1.77597 1.48841 1.25802 1.48126 1.16213 1.37964 1.33702 1.21954 0.99266 0.94417 0.86381 1.22256 0.93578 1.03305 0.98890 1.20904 0.86788 0.99201 0.89337 0.91064 1.45584 1.09254 1.64417 1.17039 1.20269 0.81751 0.77380 0.89753 1.90744 1.49841 1.56623 1.47396 1.21621 1.00603 1.02866 0.92245 1.21617 0.92976 1.02815 0.98067 1.21833 0.95167 1.00004 0.96418 0.89573 1.21351 0.81706 1.02230 0.94455 0.90046 0.83541 0.84493 0.92460 0.86490 0.90489 0.90408 0.76620 0.88157 0.88107 0.90953 0.89886 0.92183 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.52 10.74 55.57 0.60 -17.92 16 2 C 0.07 1.76 5.39 -17.28 -0.09 1.66 16 3 Si 0.92 17.96 29.58 -169.99 -5.03 12.93 16 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.39 -10.16 8.60 -37.94 -0.33 -10.49 16 8 H 0.09 2.28 7.44 -52.49 -0.39 1.89 16 9 C 0.14 3.64 5.70 -106.21 -0.61 3.04 16 10 C -0.10 -2.22 9.06 -39.12 -0.35 -2.57 16 11 C -0.22 -4.48 11.07 28.86 0.32 -4.16 16 12 S -0.03 -0.52 20.30 -107.50 -2.18 -2.71 16 13 C -0.44 -10.42 5.39 -35.88 -0.19 -10.61 16 14 C 0.62 14.19 7.03 -13.04 -0.09 14.09 16 15 O -0.55 -14.34 15.92 5.13 0.08 -14.26 16 16 N -0.63 -10.87 2.98 -174.35 -0.52 -11.39 16 17 C 0.11 1.52 5.87 -3.66 -0.02 1.50 16 18 C -0.14 -1.65 5.73 -26.64 -0.15 -1.80 16 19 C 0.14 1.52 2.71 -68.64 -0.19 1.33 16 20 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 21 N -0.71 -7.79 5.22 -55.12 -0.29 -8.08 16 22 C 0.52 6.58 7.71 -11.80 -0.09 6.49 16 23 O -0.57 -9.32 17.78 5.55 0.10 -9.22 16 24 C -0.13 -1.30 6.00 -28.09 -0.17 -1.47 16 25 C -0.12 -1.06 5.40 -26.67 -0.14 -1.20 16 26 C -0.11 -1.32 2.12 -90.64 -0.19 -1.51 16 27 H 0.09 1.16 8.12 -51.93 -0.42 0.73 16 28 C 0.13 1.77 5.78 -3.69 -0.02 1.75 16 29 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 30 H 0.15 3.42 6.29 -52.48 -0.33 3.09 16 31 H 0.14 2.39 8.06 -52.49 -0.42 1.96 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.12 1.95 4.24 -34.96 -0.15 1.80 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.40 4.03 8.71 -40.82 -0.36 3.67 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 1.53 7.03 -51.93 -0.36 1.16 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -30.42 348.80 -9.68 -40.10 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -5.37 Total: 9.24 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -2.32 Total: -3.95 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.21 Total: -37.39 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.18 Total: -23.48 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Atomic # 16 Polarization: -0.52 SS G_CDS: -2.18 Total: -2.71 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.42 -9.68 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869260125.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.605 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds