Wall clock time and date at job start Tue Mar 31 2020 17:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86802 * 120.00293 * 2 1 4 4 H 1.48498 * 109.47030 * 89.99570 * 3 2 1 5 5 H 1.48501 * 109.47347 * 209.99935 * 3 2 1 6 6 H 1.48503 * 109.46842 * 330.00021 * 3 2 1 7 7 C 1.40310 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00585 * 189.85314 * 7 2 1 9 9 C 1.40541 * 119.99843 * 9.85994 * 7 2 1 10 10 C 1.44186 * 123.71447 * 23.51109 * 9 7 2 11 11 C 1.32774 * 114.43102 * 180.02562 * 10 9 7 12 12 S 1.75465 * 111.35919 * 0.02562 * 11 10 9 13 13 C 1.39541 * 123.71563 * 203.22332 * 9 7 2 14 14 C 1.46243 * 125.22875 * 359.97438 * 13 9 7 15 15 O 1.21762 * 119.99685 * 0.02562 * 14 13 9 16 16 N 1.34776 * 120.00015 * 179.97438 * 14 13 9 17 17 C 1.46501 * 119.99679 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.43750 * 327.54869 * 17 16 14 19 19 C 1.54633 * 110.48501 * 205.00393 * 17 16 14 20 20 C 1.54488 * 101.76002 * 216.52619 * 19 17 16 21 21 N 1.46757 * 105.47347 * 25.41763 * 20 19 17 22 22 C 1.46504 * 124.34508 * 162.98319 * 21 20 19 23 23 C 1.53777 * 113.61430 * 217.49463 * 22 21 20 24 24 C 1.53784 * 87.08377 * 220.02106 * 23 22 21 25 25 C 1.53782 * 113.61318 * 119.99738 * 22 21 20 26 26 C 1.34412 * 111.30522 * 342.98209 * 21 20 19 27 27 O 1.21283 * 124.94298 * 180.44558 * 26 21 20 28 28 H 0.97002 * 119.99839 * 0.02562 * 1 2 3 29 29 H 1.08003 * 122.78487 * 0.02562 * 10 9 7 30 30 H 1.07993 * 124.31559 * 179.97438 * 11 10 9 31 31 H 0.96996 * 120.00047 * 0.02562 * 16 14 13 32 32 H 1.08995 * 110.97021 * 334.64217 * 19 17 16 33 33 H 1.08997 * 110.96638 * 98.37448 * 19 17 16 34 34 H 1.09002 * 110.24168 * 144.41842 * 20 19 17 35 35 H 1.08996 * 110.24412 * 266.41541 * 20 19 17 36 36 H 1.08999 * 112.85022 * 348.79996 * 22 21 20 37 37 H 1.09001 * 113.61600 * 334.57008 * 23 22 21 38 38 H 1.08999 * 113.61696 * 105.46968 * 23 22 21 39 39 H 1.08996 * 113.61045 * 270.88395 * 24 23 22 40 40 H 1.09004 * 113.61576 * 139.98207 * 24 23 22 41 41 H 1.09005 * 113.61454 * 254.52745 * 25 22 21 42 42 H 1.08996 * 113.61647 * 25.34812 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4878 2.0464 1.4001 5 1 3.5380 1.4401 -0.7000 6 1 1.4378 2.6527 -0.7001 7 6 2.0079 -1.2151 0.0005 8 1 3.0760 -1.2220 0.1606 9 6 1.3208 -2.4233 -0.2073 10 6 0.0550 -2.5167 -0.8915 11 6 -0.4298 -3.7493 -0.9838 12 16 0.6412 -4.9155 -0.2275 13 6 1.7911 -3.6654 0.2206 14 6 3.0466 -3.8913 0.9357 15 8 3.7731 -2.9512 1.2021 16 7 3.3989 -5.1399 1.3009 17 6 4.6569 -5.3662 2.0168 18 1 5.4108 -4.6463 1.6984 19 6 5.1575 -6.8112 1.7877 20 6 5.7657 -7.1558 3.1654 21 7 5.0649 -6.2984 4.1283 22 6 5.0504 -6.5216 5.5762 23 6 3.7017 -6.1914 6.2369 24 6 4.5079 -5.5844 7.3973 25 6 5.6428 -5.3556 6.3851 26 6 4.4380 -5.2820 3.5113 27 8 3.7916 -4.4221 4.0714 28 1 -0.4850 0.8401 -0.0004 29 1 -0.4564 -1.6554 -1.2954 30 1 -1.3643 -4.0017 -1.4625 31 1 2.8199 -5.8888 1.0890 32 1 4.3289 -7.4780 1.5493 33 1 5.9172 -6.8416 1.0067 34 1 5.5945 -8.2062 3.4011 35 1 6.8333 -6.9362 3.1719 36 1 5.4495 -7.4959 5.8583 37 1 3.1125 -5.4593 5.6846 38 1 3.1263 -7.0731 6.5192 39 1 4.7575 -6.3027 8.1782 40 1 4.0806 -4.6618 7.7902 41 1 6.6347 -5.5625 6.7872 42 1 5.5857 -4.3952 5.8728 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869503716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:47 Heat of formation + Delta-G solvation = -19.927149 kcal Electronic energy + Delta-G solvation = -26493.691559 eV Core-core repulsion = 22758.719407 eV Total energy + Delta-G solvation = -3734.972153 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.78198 -38.47178 -37.39496 -36.18443 -35.86440 -33.39835 -33.02130 -30.34226 -28.92387 -27.23167 -25.84837 -25.64732 -24.87341 -22.37605 -21.69503 -20.63260 -19.91453 -18.77856 -18.65330 -17.73880 -16.77982 -16.49512 -15.73328 -15.52120 -15.35678 -14.98904 -14.35242 -14.17240 -13.90176 -13.63339 -13.60571 -13.25325 -12.85515 -12.67250 -12.53731 -12.42627 -12.14657 -11.98855 -11.96326 -11.72730 -11.40038 -11.16867 -11.08391 -11.03367 -10.93413 -10.57057 -10.55540 -10.39880 -10.10388 -9.61321 -9.58977 -9.21857 -8.57992 -8.41276 -8.15723 -7.45009 -7.10664 -7.00774 -4.48398 2.19698 2.79403 2.99705 3.01966 3.03505 3.10709 3.15943 3.67015 3.83759 3.89410 4.05781 4.30244 4.49741 4.54537 4.57047 4.72299 4.81371 4.83492 4.96198 5.04004 5.26942 5.32513 5.38209 5.55629 5.62428 5.75224 5.78936 5.87950 5.94111 6.00564 6.07535 6.10684 6.28997 6.66787 6.81156 6.87527 7.14855 7.19841 7.24141 7.31160 7.50208 7.73889 8.38588 8.44225 8.48996 8.63592 8.80915 9.62463 9.90451 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.012889 B = 0.003663 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.947964 B = 7641.158188 C = 8667.965117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.067 3.933 3 Si 0.925 3.075 4 H -0.264 1.264 5 H -0.255 1.255 6 H -0.274 1.274 7 C -0.375 4.375 8 H 0.111 0.889 9 C 0.141 3.859 10 C -0.098 4.098 11 C -0.206 4.206 12 S -0.054 6.054 13 C -0.428 4.428 14 C 0.605 3.395 15 O -0.553 6.553 16 N -0.732 5.732 17 C 0.124 3.876 18 H 0.120 0.880 19 C -0.139 4.139 20 C 0.106 3.894 21 N -0.619 5.619 22 C 0.134 3.866 23 C -0.158 4.158 24 C -0.137 4.137 25 C -0.150 4.150 26 C 0.505 3.495 27 O -0.496 6.496 28 H 0.288 0.712 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.392 0.608 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.152 -12.893 5.509 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.154 4.154 3 Si 0.749 3.251 4 H -0.189 1.189 5 H -0.179 1.179 6 H -0.199 1.199 7 C -0.405 4.405 8 H 0.129 0.871 9 C 0.130 3.870 10 C -0.130 4.130 11 C -0.339 4.339 12 S 0.200 5.800 13 C -0.547 4.547 14 C 0.403 3.597 15 O -0.435 6.435 16 N -0.386 5.386 17 C 0.014 3.986 18 H 0.137 0.863 19 C -0.178 4.178 20 C -0.017 4.017 21 N -0.355 5.355 22 C 0.031 3.969 23 C -0.196 4.196 24 C -0.175 4.175 25 C -0.189 4.189 26 C 0.290 3.710 27 O -0.369 6.369 28 H 0.099 0.901 29 H 0.163 0.837 30 H 0.155 0.845 31 H 0.227 0.773 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.038 -13.121 6.245 16.606 hybrid contribution -0.115 1.611 -0.168 1.624 sum 7.923 -11.510 6.076 15.237 Atomic orbital electron populations 1.69670 1.08094 1.30347 1.32075 1.26381 0.94938 1.02608 0.91504 0.86001 0.80514 0.78754 0.79853 1.18874 1.17855 1.19944 1.20041 0.97802 0.88798 1.33887 0.87075 1.17917 0.89487 0.91790 0.87843 1.21730 0.96345 0.96045 0.98898 1.24924 1.03374 0.96960 1.08685 1.82633 1.18207 1.14238 1.64888 1.22482 1.04694 0.95591 1.31898 1.16826 0.84698 0.80973 0.77246 1.90660 1.53753 1.41233 1.57876 1.45654 1.21807 1.10005 1.61126 1.21323 0.90258 0.97587 0.89421 0.86284 1.22914 1.02120 0.95686 0.97030 1.22023 0.96609 0.95118 0.87974 1.48301 1.52403 1.28749 1.06073 1.22536 0.98094 0.98609 0.77693 1.23513 0.96852 1.02056 0.97206 1.22624 0.97382 1.01361 0.96179 1.23371 0.97995 1.00047 0.97458 1.21555 0.78364 0.80451 0.90639 1.90695 1.38682 1.36166 1.71313 0.90111 0.83716 0.84508 0.77341 0.89540 0.88559 0.90510 0.91077 0.87557 0.87124 0.91704 0.90390 0.90917 0.91535 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.31 10.82 55.57 0.60 -18.71 16 2 C 0.07 1.69 5.39 -17.28 -0.09 1.60 16 3 Si 0.93 19.14 29.57 -169.99 -5.03 14.11 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 7 C -0.37 -10.39 8.52 -37.94 -0.32 -10.71 16 8 H 0.11 3.23 6.03 -52.49 -0.32 2.92 16 9 C 0.14 3.85 5.68 -106.21 -0.60 3.25 16 10 C -0.10 -2.43 9.04 -39.12 -0.35 -2.78 16 11 C -0.21 -4.55 11.07 28.86 0.32 -4.23 16 12 S -0.05 -1.18 22.25 -107.50 -2.39 -3.58 16 13 C -0.43 -11.13 6.51 -35.88 -0.23 -11.37 16 14 C 0.61 15.29 7.76 -13.05 -0.10 15.19 16 15 O -0.55 -15.67 14.09 5.13 0.07 -15.59 16 16 N -0.73 -14.47 5.12 -55.25 -0.28 -14.75 16 17 C 0.12 2.04 3.28 -67.94 -0.22 1.81 16 18 H 0.12 2.10 7.55 -51.93 -0.39 1.71 16 19 C -0.14 -1.43 6.87 -25.09 -0.17 -1.60 16 20 C 0.11 0.95 7.35 -3.12 -0.02 0.93 16 21 N -0.62 -8.00 3.14 -163.92 -0.52 -8.51 16 22 C 0.13 1.52 4.62 -67.12 -0.31 1.21 16 23 C -0.16 -2.03 7.46 -25.92 -0.19 -2.22 16 24 C -0.14 -1.51 8.08 -25.92 -0.21 -1.72 16 25 C -0.15 -1.77 7.61 -25.92 -0.20 -1.96 16 26 C 0.50 8.92 7.08 -10.86 -0.08 8.84 16 27 O -0.50 -11.16 14.60 5.55 0.08 -11.08 16 28 H 0.29 6.40 8.29 -40.82 -0.34 6.06 16 29 H 0.15 3.55 6.40 -52.48 -0.34 3.22 16 30 H 0.14 2.56 8.06 -52.49 -0.42 2.13 16 31 H 0.39 7.03 7.50 -40.82 -0.31 6.72 16 32 H 0.09 0.83 7.82 -51.93 -0.41 0.42 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.11 1.89 5.61 -51.93 -0.29 1.60 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 1.36 7.32 -51.93 -0.38 0.98 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -33.20 356.96 -10.25 -43.45 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -5.37 Total: 13.05 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.79 Total: -3.77 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: -0.20 Total: -41.98 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: 0.15 Total: -26.67 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Atomic # 16 Polarization: -1.18 SS G_CDS: -2.39 Total: -3.58 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.20 -10.25 -43.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869503716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.523 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds