Wall clock time and date at job start Tue Mar 31 2020 17:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38386 * 119.91981 * 2 1 4 4 C 1.38345 * 120.30657 * 179.97438 * 3 2 1 5 5 C 1.37974 * 120.14633 * 0.04935 * 4 3 2 6 6 C 1.39607 * 119.84874 * 359.97431 * 5 4 3 7 7 C 1.43197 * 120.15077 * 180.02562 * 6 5 4 8 8 N 4.80112 * 134.70886 * 179.97438 * 2 1 3 9 9 C 1.37929 * 119.92952 * 180.28121 * 2 1 3 10 10 S 1.76205 * 120.07536 * 0.04376 * 9 2 1 11 11 O 1.42102 * 106.40222 * 26.95769 * 10 9 2 12 12 O 1.42091 * 106.40212 * 159.87948 * 10 9 2 13 13 N 1.65597 * 107.21472 * 273.41950 * 10 9 2 14 14 C 1.46923 * 120.63267 * 278.01254 * 13 10 9 15 15 C 1.53626 * 108.54654 * 126.36974 * 14 13 10 16 16 C 1.53046 * 109.23931 * 54.85516 * 15 14 13 17 17 C 1.50700 * 109.44777 * 178.49786 * 16 15 14 18 18 H 1.07997 * 119.99960 * 120.05997 * 17 16 15 19 19 C 1.37874 * 119.99801 * 300.06613 * 17 16 15 20 20 N 1.31512 * 120.00420 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99536 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47648 * 59.99791 * 21 19 17 23 23 H 1.48507 * 109.46907 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47246 * 299.99359 * 21 19 17 25 25 C 1.53043 * 109.54013 * 298.51401 * 16 15 14 26 26 C 1.46924 * 120.62830 * 98.29464 * 13 10 9 27 27 H 1.08998 * 109.46914 * 96.73740 * 1 2 3 28 28 H 1.09000 * 109.46645 * 216.73247 * 1 2 3 29 29 H 1.08995 * 109.47304 * 336.73447 * 1 2 3 30 30 H 1.07994 * 119.85282 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.92828 * 180.02562 * 4 3 2 32 32 H 1.08002 * 120.07058 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.58503 * 246.20735 * 14 13 10 34 34 H 1.09001 * 109.58362 * 6.62588 * 14 13 10 35 35 H 1.09000 * 109.63131 * 294.87093 * 15 14 13 36 36 H 1.08993 * 109.43144 * 174.72485 * 15 14 13 37 37 H 1.09005 * 109.45887 * 58.53427 * 16 15 14 38 38 H 0.97003 * 119.99994 * 180.02562 * 20 19 17 39 39 H 1.09004 * 109.49331 * 301.41393 * 25 16 15 40 40 H 1.08990 * 109.52361 * 181.33093 * 25 16 15 41 41 H 1.08995 * 109.59318 * 353.37002 * 26 13 10 42 42 H 1.08998 * 109.59067 * 113.65347 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1994 0.0000 4 6 3.5807 1.2088 0.0005 5 6 4.2816 0.0203 0.0000 6 6 3.5917 -1.1933 -0.0005 7 6 4.3126 -2.4305 -0.0004 8 7 4.8846 -3.4121 0.0015 9 6 2.1952 -1.1953 -0.0059 10 16 1.3143 -2.7214 -0.0145 11 8 0.0618 -2.4582 -0.6319 12 8 2.2225 -3.7062 -0.4880 13 7 0.9865 -3.1070 1.5622 14 6 2.0020 -3.7594 2.4000 15 6 2.1828 -2.9322 3.6819 16 6 0.8242 -2.7560 4.3642 17 6 1.0017 -1.9765 5.6417 18 1 0.4906 -1.0345 5.7749 19 6 1.8166 -2.4660 6.6403 20 7 2.4387 -3.6133 6.4783 21 14 2.0360 -1.5001 8.2241 22 1 0.7182 -1.3306 8.8872 23 1 2.9543 -2.2363 9.1297 24 1 2.6097 -0.1658 7.9147 25 6 -0.1225 -1.9973 3.4313 26 6 -0.3274 -2.8088 2.1482 27 1 -0.3633 -0.1206 -1.0206 28 1 -0.3632 -0.8236 0.6146 29 1 -0.3633 0.9440 0.4059 30 1 1.6536 2.1325 -0.0004 31 1 4.1132 2.1484 0.0009 32 1 5.3616 0.0291 0.0009 33 1 1.6729 -4.7668 2.6552 34 1 2.9466 -3.8076 1.8582 35 1 2.5938 -1.9542 3.4317 36 1 2.8637 -3.4520 4.3558 37 1 0.4024 -3.7350 4.5918 38 1 3.0117 -3.9578 7.1810 39 1 0.3104 -1.0280 3.1835 40 1 -1.0823 -1.8512 3.9266 41 1 -0.9203 -2.2296 1.4404 42 1 -0.8436 -3.7401 2.3809 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872473097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:46 Heat of formation + Delta-G solvation = -13.158052 kcal Electronic energy + Delta-G solvation = -27917.675884 eV Core-core repulsion = 24182.997261 eV Total energy + Delta-G solvation = -3734.678623 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.79856 -37.82408 -37.55173 -36.16924 -35.74370 -33.49145 -33.12702 -31.73189 -30.92231 -30.15302 -27.24583 -25.79400 -24.41242 -22.66111 -22.50497 -22.37748 -19.62823 -18.84272 -18.37361 -17.67285 -17.07309 -16.42612 -16.23312 -15.34959 -15.23900 -14.60843 -14.38259 -14.08506 -13.96106 -13.62359 -13.40575 -13.26313 -13.15657 -12.97323 -12.96373 -12.76695 -12.53778 -12.49973 -12.14866 -11.98342 -11.95236 -11.70470 -11.45155 -11.37820 -10.96884 -10.89268 -10.70897 -10.61302 -10.43264 -10.10562 -9.65087 -9.61334 -9.23048 -9.03857 -8.98888 -8.46412 -8.30117 -6.03636 -4.10483 0.23193 0.55699 0.83590 2.75388 2.79913 3.09064 3.27333 3.33283 3.34811 3.57312 3.70076 3.88608 4.20707 4.38875 4.54850 4.61345 4.92998 4.99668 5.05292 5.15241 5.25849 5.37980 5.49110 5.53545 5.69483 5.77450 5.82818 5.92838 5.99114 6.05278 6.09863 6.16461 6.27385 6.36467 6.38773 6.49046 6.66044 6.83778 7.02633 7.12651 7.37006 7.54322 7.67354 7.91174 8.04178 8.38391 8.93000 9.54673 11.01702 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.012712 B = 0.004737 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.065098 B = 5909.383578 C = 6094.825536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.026 3.974 3 C -0.119 4.119 4 C -0.063 4.063 5 C -0.101 4.101 6 C 0.085 3.915 7 C 0.218 3.782 8 N -0.355 5.355 9 C -0.644 4.644 10 S 2.679 3.321 11 O -0.956 6.956 12 O -0.953 6.953 13 N -0.984 5.984 14 C 0.120 3.880 15 C -0.122 4.122 16 C 0.052 3.948 17 C -0.513 4.513 18 H 0.054 0.946 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.124 4.124 26 C 0.115 3.885 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.038 0.962 36 H 0.103 0.897 37 H 0.029 0.971 38 H 0.261 0.739 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.302 10.017 -13.340 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.025 3.975 3 C -0.138 4.138 4 C -0.081 4.081 5 C -0.122 4.122 6 C 0.081 3.919 7 C -0.098 4.098 8 N -0.030 5.030 9 C -0.731 4.731 10 S 2.769 3.231 11 O -0.946 6.946 12 O -0.943 6.943 13 N -0.825 5.825 14 C -0.004 4.004 15 C -0.161 4.161 16 C 0.033 3.967 17 C -0.552 4.552 18 H 0.072 0.928 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.204 1.204 25 C -0.163 4.163 26 C -0.009 4.009 27 H 0.116 0.884 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.156 0.844 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.121 0.879 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.515 7.873 -13.974 16.047 hybrid contribution 0.466 1.592 1.313 2.115 sum -0.049 9.465 -12.661 15.807 Atomic orbital electron populations 1.21430 0.89128 1.04306 1.05076 1.19579 0.96601 0.91178 0.90140 1.21410 0.94463 0.97922 1.00051 1.21355 0.94322 0.98091 0.94374 1.21268 1.00608 0.90702 0.99665 1.15360 0.89893 0.88008 0.98661 1.25400 0.95238 0.92999 0.96177 1.81139 1.08425 1.08451 1.05005 1.31176 1.03918 1.21606 1.16417 1.02392 0.73648 0.73733 0.73348 1.93573 1.40961 1.85735 1.74336 1.93613 1.65467 1.56285 1.78884 1.57590 1.21895 1.73007 1.29985 1.21828 0.88313 0.97108 0.93174 1.22093 1.02624 0.97993 0.93427 1.18576 0.90412 0.95758 0.91925 1.21149 1.27677 1.06371 0.99959 0.92754 1.24960 0.95716 0.94934 0.98326 1.69829 1.30490 1.18931 1.33604 0.86707 0.77998 0.80053 0.83498 1.20314 1.21347 1.20410 1.22024 1.00971 0.98704 0.94609 1.21719 0.81959 1.00633 0.96594 0.88438 0.89635 0.90327 0.84366 0.84214 0.84176 0.91159 0.91867 0.94319 0.87872 0.95331 0.92876 0.92840 0.91960 0.90054 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.33 36.01 0.30 -1.25 16 2 C 0.03 0.32 5.87 -104.68 -0.61 -0.30 16 3 C -0.12 -1.11 9.67 -39.49 -0.38 -1.49 16 4 C -0.06 -0.54 10.03 -39.64 -0.40 -0.94 16 5 C -0.10 -1.06 9.76 -39.17 -0.38 -1.44 16 6 C 0.09 1.19 5.73 -106.93 -0.61 0.58 16 7 C 0.22 3.61 11.60 -22.47 -0.26 3.35 16 8 N -0.36 -6.57 18.00 41.84 0.75 -5.82 16 9 C -0.64 -9.22 6.00 -39.17 -0.24 -9.46 16 10 S 2.68 43.87 5.04 -107.50 -0.54 43.33 16 11 O -0.96 -15.51 13.34 -57.17 -0.76 -16.27 16 12 O -0.95 -18.07 13.84 -57.17 -0.79 -18.86 16 13 N -0.98 -16.84 3.28 -113.27 -0.37 -17.22 16 14 C 0.12 2.30 6.38 -3.49 -0.02 2.28 16 15 C -0.12 -2.69 5.17 -26.38 -0.14 -2.83 16 16 C 0.05 1.18 2.06 -91.73 -0.19 0.99 16 17 C -0.51 -13.19 8.56 -34.44 -0.29 -13.49 16 18 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 19 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 20 N -0.89 -24.36 11.31 55.43 0.63 -23.74 16 21 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C -0.12 -2.27 5.30 -26.61 -0.14 -2.41 16 26 C 0.12 1.84 5.99 -3.71 -0.02 1.82 16 27 H 0.10 1.00 7.78 -51.93 -0.40 0.60 16 28 H 0.09 1.04 3.73 -51.93 -0.19 0.85 16 29 H 0.08 0.64 8.03 -51.93 -0.42 0.22 16 30 H 0.14 0.87 8.05 -52.49 -0.42 0.44 16 31 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.06 1.20 6.34 -51.93 -0.33 0.88 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.10 2.58 6.03 -51.93 -0.31 2.27 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.08 1.12 5.02 -51.93 -0.26 0.85 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 347.42 15.07 5.24 5.24 Total: -1.00 -31.27 347.42 -9.62 -40.89 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.26 Total: -0.01 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -3.49 Total: -23.04 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 1.01 Total: -46.77 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -1.55 Total: -35.13 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 43.87 SS G_CDS: -0.54 Total: 43.33 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.27 -9.62 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872473097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.733 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds