Wall clock time and date at job start Tue Mar 31 2020 18:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46404 * 2 1 4 4 C 1.53356 * 109.41688 * 240.09847 * 2 1 3 5 5 C 1.53191 * 109.14964 * 178.67719 * 4 2 1 6 6 N 1.46928 * 108.89538 * 54.57649 * 5 4 2 7 7 C 1.36940 * 120.63031 * 126.34245 * 6 5 4 8 8 H 1.07993 * 119.99899 * 332.60187 * 7 6 5 9 9 C 1.38812 * 120.00082 * 152.60947 * 7 6 5 10 10 N 1.31608 * 120.00226 * 159.35551 * 9 7 6 11 11 Si 1.86806 * 119.99740 * 339.35154 * 9 7 6 12 12 H 1.48501 * 109.46946 * 92.92249 * 11 9 7 13 13 H 1.48496 * 109.46962 * 212.92719 * 11 9 7 14 14 H 1.48503 * 109.47163 * 332.92483 * 11 9 7 15 15 C 1.46923 * 118.73774 * 306.32499 * 6 5 4 16 16 C 1.53042 * 109.46119 * 119.97587 * 2 1 3 17 17 H 1.09003 * 109.49692 * 61.42782 * 16 2 1 18 18 N 1.46504 * 109.52114 * 301.35347 * 16 2 1 19 19 C 1.34774 * 120.00075 * 155.14512 * 18 16 2 20 20 O 1.21729 * 120.00227 * 359.97438 * 19 18 16 21 21 C 1.46434 * 120.00175 * 179.97438 * 19 18 16 22 22 C 1.35869 * 124.99952 * 179.72320 * 21 19 18 23 23 C 1.38725 * 115.21387 * 179.79142 * 22 21 19 24 24 O 1.36642 * 139.74997 * 180.02562 * 23 22 21 25 25 C 1.34073 * 109.73854 * 180.39958 * 24 23 22 26 26 C 1.34216 * 109.48916 * 359.97438 * 25 24 23 27 27 C 1.38032 * 113.37714 * 0.49192 * 23 22 21 28 28 S 1.75647 * 124.99293 * 0.02790 * 21 19 18 29 29 H 1.08996 * 109.46845 * 300.02517 * 1 2 3 30 30 H 1.08996 * 109.46880 * 60.02723 * 1 2 3 31 31 H 1.09004 * 109.47156 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.68260 * 58.71566 * 4 2 1 33 33 H 1.08996 * 109.47462 * 298.51276 * 4 2 1 34 34 H 1.09001 * 109.58680 * 294.72224 * 5 4 2 35 35 H 1.08993 * 109.58965 * 174.43801 * 5 4 2 36 36 H 0.97000 * 120.00102 * 179.97438 * 10 9 7 37 37 H 1.09002 * 109.58847 * 173.39167 * 15 6 5 38 38 H 1.08998 * 109.58992 * 293.81447 * 15 6 5 39 39 H 0.96998 * 119.99675 * 335.14117 * 18 16 2 40 40 H 1.08007 * 122.39392 * 359.97309 * 22 21 19 41 41 H 1.07997 * 125.25109 * 180.02562 * 25 24 23 42 42 H 1.08012 * 126.51109 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2538 5 6 3.5714 -0.6886 -1.2644 6 7 4.0679 -1.2489 -0.0002 7 6 4.9764 -2.2735 -0.0003 8 1 5.0127 -2.9629 -0.8308 9 6 5.8506 -2.4262 1.0671 10 7 6.4274 -3.5890 1.2843 11 14 6.2085 -0.9809 2.1953 12 1 5.2795 -1.0151 3.3533 13 1 7.6090 -1.0672 2.6812 14 1 6.0213 0.2887 1.4479 15 6 3.5714 -0.6888 1.2641 16 6 2.0399 -0.7210 1.2500 17 1 1.6978 -1.7558 1.2381 18 7 1.5256 -0.0497 2.4463 19 6 1.4002 -0.7332 3.6011 20 8 1.7138 -1.9084 3.6500 21 6 0.8866 -0.0622 4.7970 22 6 0.7141 -0.6527 6.0085 23 6 0.2176 0.1757 7.0043 24 8 -0.1304 0.1262 8.3248 25 6 -0.5733 1.3278 8.7217 26 6 -0.5283 2.1849 7.6897 27 6 -0.0243 1.4649 6.5744 28 16 0.3960 1.6226 4.8744 29 1 -0.3633 0.5142 0.8897 30 1 -0.3633 0.5134 -0.8902 31 1 -0.3634 -1.0277 0.0005 32 1 1.6593 -0.2216 -2.1448 33 1 1.6980 -1.7559 -1.2421 34 1 3.9143 0.3410 -1.3673 35 1 3.9437 -1.2829 -2.0987 36 1 7.0385 -3.6955 2.0300 37 1 3.9417 -1.2849 2.0983 38 1 3.9143 0.3406 1.3674 39 1 1.2754 0.8866 2.4073 40 1 0.9496 -1.6920 6.1844 41 1 -0.9130 1.5690 9.7181 42 1 -0.8209 3.2245 7.7046 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968327394.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:12 Heat of formation + Delta-G solvation = 9.915607 kcal Electronic energy + Delta-G solvation = -26519.380348 eV Core-core repulsion = 22785.702274 eV Total energy + Delta-G solvation = -3733.678074 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.56137 -41.33516 -39.48629 -37.10645 -36.26334 -34.83046 -33.59971 -33.34909 -31.33511 -29.66384 -29.04549 -26.01112 -25.59412 -24.32894 -23.49049 -22.67514 -21.88227 -21.48394 -20.68340 -19.69268 -18.90282 -18.06165 -17.65894 -17.32768 -17.04764 -16.58073 -16.32279 -15.97411 -15.89715 -15.51677 -15.25877 -15.16969 -14.69383 -14.43272 -14.31632 -13.88592 -13.78242 -13.54707 -13.40110 -13.31486 -13.24453 -12.90424 -12.60258 -12.36976 -12.29074 -12.24541 -11.78401 -11.70300 -11.60595 -11.34302 -11.30771 -11.20586 -10.85938 -10.33044 -9.58095 -9.16020 -8.96285 -8.23144 -5.53526 -0.89633 0.04653 0.58063 0.95527 1.24112 1.27706 1.31125 1.38074 1.48343 1.91732 2.03794 2.35855 3.00450 3.33344 3.49549 3.55861 3.67498 3.84035 3.92520 3.98639 4.09248 4.27778 4.32491 4.42401 4.53647 4.58701 4.66748 4.67400 4.77517 4.78214 4.85038 4.91530 4.99634 5.07443 5.14592 5.15731 5.27925 5.29154 5.40256 5.56437 5.80169 5.82635 6.07859 6.28845 6.86019 6.97881 7.57565 7.97015 8.96752 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.003730 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.404153 B = 7504.932027 C = 8717.910796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 H 0.094 0.906 4 C -0.118 4.118 5 C 0.136 3.864 6 N -0.616 5.616 7 C -0.247 4.247 8 H 0.058 0.942 9 C -0.033 4.033 10 N -0.954 5.954 11 Si 0.940 3.060 12 H -0.298 1.298 13 H -0.306 1.306 14 H -0.248 1.248 15 C 0.117 3.883 16 C 0.144 3.856 17 H 0.060 0.940 18 N -0.701 5.701 19 C 0.583 3.417 20 O -0.569 6.569 21 C -0.259 4.259 22 C -0.030 4.030 23 C -0.033 4.033 24 O -0.180 6.180 25 C 0.039 3.961 26 C -0.191 4.191 27 C -0.220 4.220 28 S 0.258 5.742 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.106 0.894 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.260 0.740 37 H 0.035 0.965 38 H 0.039 0.961 39 H 0.412 0.588 40 H 0.146 0.854 41 H 0.266 0.734 42 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.638 20.069 9.824 30.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.105 4.105 3 H 0.113 0.887 4 C -0.157 4.157 5 C 0.012 3.988 6 N -0.341 5.341 7 C -0.376 4.376 8 H 0.076 0.924 9 C -0.228 4.228 10 N -0.600 5.600 11 Si 0.770 3.230 12 H -0.226 1.226 13 H -0.235 1.235 14 H -0.172 1.172 15 C -0.009 4.009 16 C 0.038 3.962 17 H 0.078 0.922 18 N -0.352 5.352 19 C 0.370 3.630 20 O -0.449 6.449 21 C -0.379 4.379 22 C -0.065 4.065 23 C -0.088 4.088 24 O -0.079 6.079 25 C -0.030 4.030 26 C -0.213 4.213 27 C -0.338 4.338 28 S 0.524 5.476 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.124 0.876 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.249 0.751 40 H 0.164 0.836 41 H 0.282 0.718 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -20.296 20.087 8.910 29.914 hybrid contribution 0.892 -1.157 1.848 2.355 sum -19.404 18.930 10.758 29.165 Atomic orbital electron populations 1.21800 0.92812 1.01830 1.03129 1.21388 0.97215 0.99897 0.91974 0.88748 1.22051 0.95474 1.00388 0.97774 1.21280 0.93648 0.97181 0.86677 1.44423 1.48107 1.40099 1.01449 1.18893 1.09459 1.03254 1.06028 0.92401 1.25871 0.98165 0.98600 1.00157 1.69955 1.34283 1.23893 1.31896 0.85996 0.75252 0.82757 0.79005 1.22617 1.23477 1.17220 1.21658 0.93754 0.96587 0.88904 1.21515 0.93331 0.96939 0.84430 0.92212 1.45720 1.65465 1.14721 1.09323 1.17192 0.77363 0.85741 0.82724 1.90901 1.51438 1.17706 1.84898 1.23704 1.15891 1.01057 0.97220 1.19096 0.97758 1.00959 0.88637 1.19106 1.10085 0.94759 0.84851 1.84374 1.66426 1.35288 1.21823 1.25275 0.96140 0.79720 1.01895 1.21459 1.08047 1.03003 0.88828 1.24609 1.09525 0.98384 1.01294 1.83257 1.61682 1.02511 1.00184 0.91900 0.89736 0.93938 0.87586 0.93395 0.93592 0.92263 0.93114 0.94715 0.94336 0.75106 0.83603 0.71803 0.79023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.02 71.98 0.65 -2.10 16 2 C -0.09 -2.23 2.27 -10.66 -0.02 -2.25 16 3 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.12 -3.31 5.39 30.78 0.17 -3.15 16 5 C 0.14 4.99 6.50 86.36 0.56 5.55 16 6 N -0.62 -29.94 2.77 -699.12 -1.94 -31.88 16 7 C -0.25 -14.71 10.03 84.03 0.84 -13.87 16 8 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 9 C -0.03 -2.07 5.23 84.86 0.44 -1.62 16 10 N -0.95 -64.06 13.97 21.65 0.30 -63.76 16 11 Si 0.94 50.70 24.35 68.60 1.67 52.37 16 12 H -0.30 -16.48 6.62 99.48 0.66 -15.82 16 13 H -0.31 -16.46 7.11 99.48 0.71 -15.76 16 14 H -0.25 -12.26 6.64 99.48 0.66 -11.60 16 15 C 0.12 5.36 3.78 86.36 0.33 5.68 16 16 C 0.14 5.23 2.07 45.07 0.09 5.32 16 17 H 0.06 2.63 7.58 -2.39 -0.02 2.61 16 18 N -0.70 -21.70 4.37 -446.34 -1.95 -23.65 16 19 C 0.58 21.32 7.74 86.38 0.67 21.98 16 20 O -0.57 -27.15 16.44 -4.44 -0.07 -27.22 16 21 C -0.26 -7.61 6.39 23.86 0.15 -7.45 16 22 C -0.03 -0.87 9.88 21.84 0.22 -0.66 16 23 C -0.03 -0.83 7.79 22.34 0.17 -0.65 16 24 O -0.18 -3.70 10.72 -25.55 -0.27 -3.98 16 25 C 0.04 0.42 12.00 66.90 0.80 1.22 16 26 C -0.19 -2.39 10.91 22.29 0.24 -2.14 16 27 C -0.22 -4.45 7.35 23.16 0.17 -4.28 16 28 S 0.26 5.08 22.30 -56.49 -1.26 3.82 16 29 H 0.06 1.10 7.36 -2.39 -0.02 1.08 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 36 H 0.26 16.69 8.31 -92.71 -0.77 15.92 16 37 H 0.03 1.91 4.50 -2.39 -0.01 1.90 16 38 H 0.04 1.65 7.07 -2.39 -0.02 1.63 16 39 H 0.41 9.25 7.37 -92.71 -0.68 8.57 16 40 H 0.15 4.55 8.01 -2.91 -0.02 4.53 16 41 H 0.27 -0.25 8.06 -2.91 -0.02 -0.27 16 42 H 0.19 1.06 8.06 -2.90 -0.02 1.03 16 Total: -1.00 -85.89 352.77 2.25 -83.65 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.28 Total: 9.07 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 5.49 Total: 1.58 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -3.58 Total: -119.29 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.35 Total: -31.20 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 1.67 Total: 52.37 kcal Atomic # 16 Polarization: 5.08 SS G_CDS: -1.26 Total: 3.82 kcal Total: -85.89 2.25 -83.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968327394.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.563 kcal (2) G-P(sol) polarization free energy of solvation -85.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds