Wall clock time and date at job start Tue Mar 31 2020 18:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.29071 * 2 1 4 4 C 1.53998 * 110.33327 * 237.86035 * 2 1 3 5 5 N 1.47476 * 107.08735 * 242.31291 * 4 2 1 6 6 C 1.34782 * 127.03493 * 154.51341 * 5 4 2 7 7 O 1.21737 * 119.99839 * 185.58512 * 6 5 4 8 8 C 1.46424 * 120.00155 * 5.58296 * 6 5 4 9 9 C 1.35873 * 124.99942 * 186.24259 * 8 6 5 10 10 C 1.38725 * 115.21194 * 180.02562 * 9 8 6 11 11 O 1.36643 * 139.74250 * 180.02562 * 10 9 8 12 12 C 1.34076 * 109.73508 * 179.97438 * 11 10 9 13 13 C 1.34220 * 109.49091 * 0.02562 * 12 11 10 14 14 C 1.38035 * 113.38333 * 0.02562 * 10 9 8 15 15 S 1.75652 * 124.99674 * 6.27604 * 8 6 5 16 16 C 1.48117 * 105.93213 * 334.77639 * 5 4 2 17 17 C 1.54592 * 103.42156 * 39.02345 * 16 5 4 18 18 H 1.08999 * 110.57634 * 81.17559 * 17 16 5 19 19 C 1.53008 * 110.98865 * 204.37256 * 17 16 5 20 20 N 1.46497 * 109.47129 * 288.65700 * 19 17 16 21 21 C 1.36939 * 119.99650 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00317 * 359.97438 * 21 20 19 23 23 C 1.38814 * 119.99613 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00243 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99805 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46858 * 90.00119 * 25 23 21 27 27 H 1.48496 * 109.47252 * 210.00147 * 25 23 21 28 28 H 1.48495 * 109.47221 * 330.00416 * 25 23 21 29 29 H 1.08993 * 109.46905 * 180.68486 * 1 2 3 30 30 H 1.08999 * 109.47082 * 300.68463 * 1 2 3 31 31 H 1.08995 * 109.46889 * 60.68545 * 1 2 3 32 32 H 1.09004 * 109.91506 * 122.94695 * 4 2 1 33 33 H 1.09006 * 109.90612 * 1.67355 * 4 2 1 34 34 H 1.08006 * 122.39400 * 359.75691 * 9 8 6 35 35 H 1.07998 * 125.25525 * 179.97438 * 12 11 10 36 36 H 1.07997 * 126.51312 * 179.97438 * 13 12 11 37 37 H 1.09007 * 110.66560 * 157.50725 * 16 5 4 38 38 H 1.09005 * 110.66182 * 280.62060 * 16 5 4 39 39 H 1.09001 * 109.46823 * 48.65530 * 19 17 16 40 40 H 1.09000 * 109.47066 * 168.64749 * 19 17 16 41 41 H 0.96995 * 120.00291 * 359.97438 * 20 19 17 42 42 H 0.97006 * 119.99816 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0651 -0.7682 -1.2227 5 7 2.8298 -1.9202 -0.7100 6 6 3.0646 -3.0860 -1.3445 7 8 3.6285 -3.9936 -0.7612 8 6 2.6416 -3.2607 -2.7354 9 6 2.7166 -4.4245 -3.4324 10 6 2.2585 -4.3606 -4.7403 11 8 2.1049 -5.1678 -5.8321 12 6 1.5761 -4.4650 -6.8440 13 6 1.3720 -3.1980 -6.4507 14 6 1.8038 -3.1082 -5.1009 15 16 1.9631 -1.9962 -3.7484 16 6 3.2816 -1.5367 0.6474 17 6 2.0693 -0.7719 1.2264 18 1 1.3210 -1.4691 1.6033 19 6 2.5071 0.1969 2.3268 20 7 2.9001 -0.5615 3.5170 21 6 3.3317 0.0976 4.6371 22 1 3.3827 1.1764 4.6429 23 6 3.7035 -0.6209 5.7651 24 7 3.6418 -1.9356 5.7579 25 14 4.2916 0.2781 7.2933 26 1 3.1306 0.5756 8.1701 27 1 5.2606 -0.5748 8.0273 28 1 4.9511 1.5483 6.8974 29 1 -0.3633 -1.0275 0.0123 30 1 -0.3633 0.5244 0.8838 31 1 -0.3633 0.5031 -0.8960 32 1 2.7168 -0.1221 -1.8111 33 1 1.2334 -1.1174 -1.8348 34 1 3.1090 -5.3334 -3.0006 35 1 1.3501 -4.8575 -7.8244 36 1 0.9582 -2.3987 -7.0475 37 1 3.4981 -2.4221 1.2453 38 1 4.1542 -0.8856 0.5927 39 1 3.3539 0.7867 1.9758 40 1 1.6799 0.8615 2.5760 41 1 2.8546 -1.5303 3.5117 42 1 3.9013 -2.4377 6.5463 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106662043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:45 Heat of formation + Delta-G solvation = 27.168299 kcal Electronic energy + Delta-G solvation = -25650.912024 eV Core-core repulsion = 21917.982084 eV Total energy + Delta-G solvation = -3732.929941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.81163 -40.20227 -38.14681 -36.08881 -34.70631 -33.00016 -32.79893 -31.45746 -29.77011 -28.55940 -26.64742 -25.81709 -24.20897 -23.23796 -22.60255 -21.28636 -20.86587 -20.00582 -19.26576 -18.68789 -17.27052 -16.92829 -16.56012 -16.22110 -15.74122 -15.60267 -15.07853 -14.78134 -14.39355 -14.14296 -13.71172 -13.62193 -13.33357 -13.24161 -13.02179 -12.98722 -12.59706 -12.50461 -12.30599 -12.11195 -11.91100 -11.50571 -11.18294 -11.02945 -10.85903 -10.59354 -10.57952 -10.50411 -10.39642 -10.11941 -10.00101 -9.66822 -8.88397 -8.80582 -8.73620 -8.31828 -6.92310 -5.74756 -3.04433 0.01837 0.93345 1.51367 1.77459 2.02676 2.23901 2.90448 3.03814 3.44836 3.49652 3.51878 4.19862 4.24828 4.45828 4.49395 4.59415 4.77813 4.78994 4.83553 5.15761 5.18759 5.27595 5.30584 5.45549 5.47835 5.51149 5.57874 5.60023 5.72908 5.74703 5.83693 5.92940 6.01277 6.08999 6.14577 6.16554 6.37602 6.42373 6.51122 6.69369 6.81669 7.42615 7.70624 8.00490 8.43252 9.54551 10.11425 10.45577 11.47775 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.027365 B = 0.002399 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.963720 B =11668.562441 C =12439.842413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.092 0.908 4 C 0.091 3.909 5 N -0.615 5.615 6 C 0.606 3.394 7 O -0.520 6.520 8 C -0.222 4.222 9 C -0.026 4.026 10 C 0.001 3.999 11 O -0.165 6.165 12 C 0.014 3.986 13 C -0.179 4.179 14 C -0.237 4.237 15 S 0.216 5.784 16 C 0.117 3.883 17 C -0.102 4.102 18 H 0.086 0.914 19 C 0.166 3.834 20 N -0.733 5.733 21 C -0.242 4.242 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.161 0.839 35 H 0.215 0.785 36 H 0.158 0.842 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.022 0.978 40 H 0.024 0.976 41 H 0.385 0.615 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.392 0.384 -28.133 29.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.110 0.890 4 C -0.034 4.034 5 N -0.348 5.348 6 C 0.393 3.607 7 O -0.398 6.398 8 C -0.342 4.342 9 C -0.060 4.060 10 C -0.054 4.054 11 O -0.064 6.064 12 C -0.056 4.056 13 C -0.202 4.202 14 C -0.355 4.355 15 S 0.481 5.519 16 C -0.004 4.004 17 C -0.122 4.122 18 H 0.104 0.896 19 C 0.038 3.962 20 N -0.377 5.377 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.179 0.821 35 H 0.231 0.769 36 H 0.176 0.824 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.040 0.960 40 H 0.042 0.958 41 H 0.218 0.782 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.244 1.181 -27.502 28.465 hybrid contribution 0.494 -1.210 0.352 1.353 sum -6.750 -0.029 -27.150 27.977 Atomic orbital electron populations 1.21856 0.93922 1.02169 1.02131 1.22054 0.96538 0.99712 0.93109 0.89016 1.22439 0.95670 0.87976 0.97314 1.48644 1.53257 1.14155 1.18777 1.16273 0.79486 0.81433 0.83473 1.90901 1.42897 1.39644 1.66332 1.23916 1.13221 0.97770 0.99243 1.19030 0.99129 0.99497 0.88374 1.19249 1.07901 0.88070 0.90228 1.84350 1.66165 1.37534 1.18357 1.24142 0.98222 0.90803 0.92464 1.20975 1.08177 0.98284 0.92746 1.24596 1.09837 0.99801 1.01228 1.84169 1.61445 1.08546 0.97696 1.22592 0.97023 1.00444 0.80387 1.22540 0.97081 0.97937 0.94656 0.89580 1.20621 0.96653 0.92669 0.86305 1.42373 1.79273 1.05960 1.10133 1.19194 1.36089 0.91231 0.90761 0.91168 1.24759 1.02349 0.95489 0.98330 1.69663 1.54283 1.04541 1.29436 0.86195 0.78154 0.78466 0.83385 1.21751 1.21780 1.20774 0.92524 0.91566 0.92591 0.90750 0.90331 0.82104 0.76901 0.82406 0.88813 0.90221 0.96012 0.95786 0.78174 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.90 37.16 0.33 -1.09 16 2 C -0.09 -1.06 3.17 -89.25 -0.28 -1.34 16 3 H 0.09 0.94 7.85 -51.93 -0.41 0.53 16 4 C 0.09 0.98 5.03 -2.99 -0.02 0.96 16 5 N -0.62 -8.77 3.29 -171.61 -0.57 -9.34 16 6 C 0.61 9.49 7.84 -12.96 -0.10 9.39 16 7 O -0.52 -10.07 16.98 5.16 0.09 -9.98 16 8 C -0.22 -2.85 6.30 -37.14 -0.23 -3.09 16 9 C -0.03 -0.32 9.88 -40.25 -0.40 -0.72 16 10 C 0.00 0.01 7.79 -39.48 -0.31 -0.29 16 11 O -0.17 -1.68 10.72 -0.74 -0.01 -1.69 16 12 C 0.01 0.09 12.00 29.32 0.35 0.44 16 13 C -0.18 -1.36 10.91 -39.56 -0.43 -1.79 16 14 C -0.24 -2.46 7.35 -38.21 -0.28 -2.74 16 15 S 0.22 2.12 18.96 -107.50 -2.04 0.08 16 16 C 0.12 1.88 6.47 -2.32 -0.01 1.86 16 17 C -0.10 -1.56 2.60 -88.93 -0.23 -1.80 16 18 H 0.09 1.43 7.86 -51.93 -0.41 1.02 16 19 C 0.17 3.11 5.59 -4.04 -0.02 3.09 16 20 N -0.73 -18.17 5.52 -59.91 -0.33 -18.50 16 21 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 25 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.69 8.02 -51.93 -0.42 0.27 16 33 H 0.08 0.76 5.24 -38.85 -0.20 0.56 16 34 H 0.16 1.91 8.01 -52.48 -0.42 1.49 16 35 H 0.21 0.39 8.06 -52.49 -0.42 -0.04 16 36 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.09 1.78 7.81 -51.92 -0.41 1.37 16 38 H 0.08 1.26 7.95 -51.93 -0.41 0.85 16 39 H 0.02 0.41 8.00 -51.93 -0.42 -0.01 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.38 10.17 7.67 -40.82 -0.31 9.86 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 361.94 15.07 5.45 5.45 Total: -1.00 -34.15 361.94 -9.07 -43.22 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.49 Total: 5.43 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.88 Total: -4.43 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.17 Total: -55.50 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.08 Total: -11.67 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.04 Total: 0.08 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.15 -9.07 -43.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106662043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.385 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds