Wall clock time and date at job start Tue Mar 31 2020 18:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.29071 * 2 1 4 4 C 1.53998 * 110.33327 * 237.86035 * 2 1 3 5 5 N 1.47476 * 107.08735 * 242.31291 * 4 2 1 6 6 C 1.34782 * 127.03493 * 154.51341 * 5 4 2 7 7 O 1.21737 * 119.99839 * 185.58512 * 6 5 4 8 8 C 1.46424 * 120.00155 * 5.58296 * 6 5 4 9 9 C 1.35873 * 124.99942 * 186.24259 * 8 6 5 10 10 C 1.38725 * 115.21194 * 180.02562 * 9 8 6 11 11 O 1.36643 * 139.74250 * 180.02562 * 10 9 8 12 12 C 1.34076 * 109.73508 * 179.97438 * 11 10 9 13 13 C 1.34220 * 109.49091 * 0.02562 * 12 11 10 14 14 C 1.38035 * 113.38333 * 0.02562 * 10 9 8 15 15 S 1.75652 * 124.99674 * 6.27604 * 8 6 5 16 16 C 1.48117 * 105.93213 * 334.77639 * 5 4 2 17 17 C 1.54592 * 103.42156 * 39.02345 * 16 5 4 18 18 H 1.08999 * 110.57634 * 81.17559 * 17 16 5 19 19 C 1.53008 * 110.98865 * 204.37256 * 17 16 5 20 20 N 1.46497 * 109.47129 * 288.65700 * 19 17 16 21 21 C 1.36939 * 119.99650 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00317 * 359.97438 * 21 20 19 23 23 C 1.38814 * 119.99613 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00243 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99805 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46858 * 90.00119 * 25 23 21 27 27 H 1.48496 * 109.47252 * 210.00147 * 25 23 21 28 28 H 1.48495 * 109.47221 * 330.00416 * 25 23 21 29 29 H 1.08993 * 109.46905 * 180.68486 * 1 2 3 30 30 H 1.08999 * 109.47082 * 300.68463 * 1 2 3 31 31 H 1.08995 * 109.46889 * 60.68545 * 1 2 3 32 32 H 1.09004 * 109.91506 * 122.94695 * 4 2 1 33 33 H 1.09006 * 109.90612 * 1.67355 * 4 2 1 34 34 H 1.08006 * 122.39400 * 359.75691 * 9 8 6 35 35 H 1.07998 * 125.25525 * 179.97438 * 12 11 10 36 36 H 1.07997 * 126.51312 * 179.97438 * 13 12 11 37 37 H 1.09007 * 110.66560 * 157.50725 * 16 5 4 38 38 H 1.09005 * 110.66182 * 280.62060 * 16 5 4 39 39 H 1.09001 * 109.46823 * 48.65530 * 19 17 16 40 40 H 1.09000 * 109.47066 * 168.64749 * 19 17 16 41 41 H 0.96995 * 120.00291 * 359.97438 * 20 19 17 42 42 H 0.97006 * 119.99816 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0651 -0.7682 -1.2227 5 7 2.8298 -1.9202 -0.7100 6 6 3.0646 -3.0860 -1.3445 7 8 3.6285 -3.9936 -0.7612 8 6 2.6416 -3.2607 -2.7354 9 6 2.7166 -4.4245 -3.4324 10 6 2.2585 -4.3606 -4.7403 11 8 2.1049 -5.1678 -5.8321 12 6 1.5761 -4.4650 -6.8440 13 6 1.3720 -3.1980 -6.4507 14 6 1.8038 -3.1082 -5.1009 15 16 1.9631 -1.9962 -3.7484 16 6 3.2816 -1.5367 0.6474 17 6 2.0693 -0.7719 1.2264 18 1 1.3210 -1.4691 1.6033 19 6 2.5071 0.1969 2.3268 20 7 2.9001 -0.5615 3.5170 21 6 3.3317 0.0976 4.6371 22 1 3.3827 1.1764 4.6429 23 6 3.7035 -0.6209 5.7651 24 7 3.6418 -1.9356 5.7579 25 14 4.2916 0.2781 7.2933 26 1 3.1306 0.5756 8.1701 27 1 5.2606 -0.5748 8.0273 28 1 4.9511 1.5483 6.8974 29 1 -0.3633 -1.0275 0.0123 30 1 -0.3633 0.5244 0.8838 31 1 -0.3633 0.5031 -0.8960 32 1 2.7168 -0.1221 -1.8111 33 1 1.2334 -1.1174 -1.8348 34 1 3.1090 -5.3334 -3.0006 35 1 1.3501 -4.8575 -7.8244 36 1 0.9582 -2.3987 -7.0475 37 1 3.4981 -2.4221 1.2453 38 1 4.1542 -0.8856 0.5927 39 1 3.3539 0.7867 1.9758 40 1 1.6799 0.8615 2.5760 41 1 2.8546 -1.5303 3.5117 42 1 3.9013 -2.4377 6.5463 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106662043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:44 Heat of formation + Delta-G solvation = 4.470429 kcal Electronic energy + Delta-G solvation = -25651.896278 eV Core-core repulsion = 21917.982084 eV Total energy + Delta-G solvation = -3733.914194 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.50502 -41.37717 -39.34172 -37.00375 -36.47946 -34.31387 -33.52762 -33.07650 -31.12942 -29.65602 -27.59893 -27.23273 -25.52078 -24.58583 -23.53118 -22.55380 -21.66153 -21.21856 -20.22506 -19.62569 -19.00154 -18.06677 -17.48653 -17.25844 -16.77502 -16.55639 -16.50865 -15.90699 -15.81250 -15.35300 -15.19924 -14.90773 -14.51240 -14.35490 -14.15074 -13.81622 -13.67623 -13.58029 -13.30660 -13.23336 -13.08930 -12.91923 -12.74461 -12.50749 -12.25111 -12.02944 -11.93870 -11.76287 -11.59001 -11.43519 -11.32478 -11.29082 -10.92522 -9.96089 -9.53483 -9.06193 -8.98704 -7.93392 -5.22736 -0.85388 0.12833 0.67369 0.98185 1.35442 1.42234 1.47719 1.49905 1.58278 1.90326 1.93593 2.56996 3.23560 3.40606 3.45851 3.55799 3.63691 3.78256 3.86796 4.10831 4.13861 4.18633 4.33951 4.42351 4.47663 4.50964 4.57655 4.62647 4.70112 4.75165 4.79111 4.82598 4.86292 4.99340 5.06738 5.18750 5.25593 5.31760 5.34098 5.49685 5.53187 5.84520 6.27929 6.28619 6.81488 7.34047 8.10735 8.31855 9.30350 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.027365 B = 0.002399 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.963720 B =11668.562441 C =12439.842413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 H 0.114 0.886 4 C 0.088 3.912 5 N -0.614 5.614 6 C 0.601 3.399 7 O -0.576 6.576 8 C -0.258 4.258 9 C -0.027 4.027 10 C -0.035 4.035 11 O -0.181 6.181 12 C 0.036 3.964 13 C -0.192 4.192 14 C -0.237 4.237 15 S 0.272 5.728 16 C 0.119 3.881 17 C -0.093 4.093 18 H 0.067 0.933 19 C 0.165 3.835 20 N -0.749 5.749 21 C -0.240 4.240 22 H 0.082 0.918 23 C -0.081 4.081 24 N -0.973 5.973 25 Si 0.975 3.025 26 H -0.287 1.287 27 H -0.300 1.300 28 H -0.266 1.266 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.149 0.851 35 H 0.264 0.736 36 H 0.190 0.810 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.033 0.967 40 H 0.035 0.965 41 H 0.371 0.629 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.883 3.110 -31.615 32.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 H 0.132 0.868 4 C -0.035 4.035 5 N -0.346 5.346 6 C 0.391 3.609 7 O -0.458 6.458 8 C -0.377 4.377 9 C -0.062 4.062 10 C -0.090 4.090 11 O -0.081 6.081 12 C -0.033 4.033 13 C -0.215 4.215 14 C -0.355 4.355 15 S 0.539 5.461 16 C -0.003 4.003 17 C -0.113 4.113 18 H 0.085 0.915 19 C 0.039 3.961 20 N -0.391 5.391 21 C -0.372 4.372 22 H 0.099 0.901 23 C -0.273 4.273 24 N -0.624 5.624 25 Si 0.804 3.196 26 H -0.214 1.214 27 H -0.227 1.227 28 H -0.190 1.190 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.167 0.833 35 H 0.280 0.720 36 H 0.207 0.793 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.202 0.798 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.766 3.996 -31.018 32.480 hybrid contribution 0.892 -2.063 1.206 2.551 sum -7.873 1.933 -29.812 30.895 Atomic orbital electron populations 1.21864 0.92556 1.01975 1.03508 1.22068 0.97606 1.00060 0.90568 0.86775 1.22724 0.96353 0.86933 0.97516 1.48663 1.53144 1.14822 1.17930 1.16714 0.78691 0.80977 0.84530 1.90854 1.45528 1.41467 1.67919 1.23577 1.16019 0.99742 0.98351 1.19052 0.98688 0.99179 0.89269 1.19158 1.10122 0.89209 0.90470 1.84362 1.66695 1.38311 1.18730 1.25242 0.94790 0.90415 0.92862 1.21453 1.08720 0.99691 0.91616 1.25088 1.08497 0.99322 1.02548 1.83681 1.60038 1.06314 0.96112 1.22389 0.97779 0.98836 0.81338 1.22350 0.96200 0.97343 0.95409 0.91464 1.20802 0.97054 0.93020 0.85222 1.42649 1.79313 1.05698 1.11466 1.19666 1.34215 0.91861 0.91449 0.90053 1.25628 1.03750 0.96235 1.01699 1.69845 1.56400 1.06220 1.29951 0.85117 0.77413 0.77603 0.79498 1.21373 1.22658 1.19047 0.93521 0.92060 0.89389 0.88025 0.88723 0.83323 0.72040 0.79290 0.92980 0.89910 0.94961 0.94717 0.79796 0.94184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.90 71.98 0.64 -1.79 16 2 C -0.08 -1.68 3.17 -9.91 -0.03 -1.71 16 3 H 0.11 1.87 7.85 -2.39 -0.02 1.85 16 4 C 0.09 1.70 5.03 86.53 0.44 2.14 16 5 N -0.61 -17.88 3.29 -815.04 -2.68 -20.57 16 6 C 0.60 19.99 7.84 86.37 0.68 20.67 16 7 O -0.58 -24.49 16.98 -4.47 -0.08 -24.56 16 8 C -0.26 -6.78 6.30 23.85 0.15 -6.63 16 9 C -0.03 -0.69 9.88 21.84 0.22 -0.48 16 10 C -0.04 -0.79 7.79 22.34 0.17 -0.62 16 11 O -0.18 -3.39 10.72 -25.58 -0.27 -3.66 16 12 C 0.04 0.34 12.00 66.90 0.80 1.14 16 13 C -0.19 -2.16 10.91 22.29 0.24 -1.91 16 14 C -0.24 -4.35 7.35 23.16 0.17 -4.18 16 15 S 0.27 4.75 18.96 -56.49 -1.07 3.68 16 16 C 0.12 4.02 6.47 86.61 0.56 4.58 16 17 C -0.09 -2.87 2.60 -9.70 -0.03 -2.89 16 18 H 0.07 2.33 7.86 -2.39 -0.02 2.31 16 19 C 0.17 6.16 5.59 86.38 0.48 6.64 16 20 N -0.75 -38.01 5.52 -343.44 -1.90 -39.90 16 21 C -0.24 -13.38 9.99 84.03 0.84 -12.54 16 22 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 23 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 24 N -0.97 -61.55 13.06 21.65 0.28 -61.27 16 25 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 26 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 27 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 28 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 29 H 0.05 0.90 8.13 -2.39 -0.02 0.88 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 1.49 8.02 -2.38 -0.02 1.48 16 33 H 0.10 1.56 5.24 -10.70 -0.06 1.50 16 34 H 0.15 4.00 8.01 -2.91 -0.02 3.98 16 35 H 0.26 -0.52 8.06 -2.91 -0.02 -0.55 16 36 H 0.19 0.86 8.06 -2.91 -0.02 0.83 16 37 H 0.05 2.18 7.81 -2.38 -0.02 2.16 16 38 H 0.08 2.71 7.95 -2.38 -0.02 2.69 16 39 H 0.03 1.16 8.00 -2.39 -0.02 1.14 16 40 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.37 20.65 7.67 -92.71 -0.71 19.94 16 42 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -79.30 361.94 2.41 -76.89 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.30 Total: 22.49 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 5.80 Total: -1.88 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -4.30 Total: -121.74 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.35 Total: -28.23 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -1.07 Total: 3.68 kcal Total: -79.30 2.41 -76.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106662043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.360 kcal (2) G-P(sol) polarization free energy of solvation -79.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds