Wall clock time and date at job start Tue Mar 31 2020 17:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37966 * 120.07897 * 2 1 4 4 C 1.38348 * 120.15374 * 179.72208 * 3 2 1 5 5 C 1.38385 * 120.29991 * 0.51860 * 4 3 2 6 6 S 1.76204 * 119.91813 * 179.76065 * 5 4 3 7 7 O 1.42105 * 106.39972 * 156.18091 * 6 5 4 8 8 O 1.42098 * 106.40426 * 23.26264 * 6 5 4 9 9 N 1.65595 * 107.21987 * 269.71976 * 6 5 4 10 10 C 1.46925 * 120.63264 * 269.72689 * 9 6 5 11 11 C 1.53624 * 108.54476 * 126.36850 * 10 9 6 12 12 C 1.53036 * 109.24529 * 54.85320 * 11 10 9 13 13 C 1.50696 * 109.45348 * 178.49593 * 12 11 10 14 14 H 1.07999 * 120.00132 * 120.05368 * 13 12 11 15 15 C 1.37877 * 120.00024 * 300.06607 * 13 12 11 16 16 N 1.31514 * 120.00094 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00225 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47147 * 89.99796 * 17 15 13 19 19 H 1.48504 * 109.47310 * 210.00200 * 17 15 13 20 20 H 1.48501 * 109.47022 * 329.99894 * 17 15 13 21 21 C 1.53034 * 109.53843 * 298.51529 * 12 11 10 22 22 C 1.46933 * 120.62849 * 90.00170 * 9 6 5 23 23 C 1.37922 * 120.15438 * 359.48303 * 5 4 3 24 24 C 1.39610 * 120.07894 * 179.97438 * 2 1 3 25 25 C 1.43206 * 120.15188 * 0.02562 * 24 2 1 26 26 N 3.48498 * 80.49546 * 179.97438 * 2 1 3 27 27 H 1.09007 * 109.47220 * 270.01644 * 1 2 3 28 28 H 1.09001 * 109.47181 * 30.01595 * 1 2 3 29 29 H 1.09000 * 109.47403 * 150.01903 * 1 2 3 30 30 H 1.08003 * 119.92669 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.84682 * 180.27326 * 4 3 2 32 32 H 1.09004 * 109.58173 * 246.20142 * 10 9 6 33 33 H 1.08999 * 109.58418 * 6.62073 * 10 9 6 34 34 H 1.08999 * 109.63032 * 294.86137 * 11 10 9 35 35 H 1.09001 * 109.45693 * 174.73978 * 11 10 9 36 36 H 1.09003 * 109.45938 * 58.52930 * 12 11 10 37 37 H 0.97000 * 120.00287 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.49815 * 301.41151 * 21 12 11 39 39 H 1.09004 * 109.52487 * 181.33183 * 21 12 11 40 40 H 1.08994 * 109.58440 * 353.37472 * 22 9 6 41 41 H 1.08995 * 109.58385 * 113.65925 * 22 9 6 42 42 H 1.07997 * 120.07423 * 180.27735 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5819 1.1957 0.0058 5 6 4.2817 0.0018 0.0008 6 16 6.0436 0.0159 0.0019 7 8 6.4545 -1.2304 0.5471 8 8 6.4346 1.2689 0.5462 9 7 6.5348 0.0192 -1.5795 10 6 6.7728 -1.2434 -2.2922 11 6 5.9469 -1.2365 -3.5875 12 6 6.2893 0.0161 -4.3973 13 6 5.5090 0.0091 -5.6865 14 1 4.8229 0.8136 -5.9069 15 6 5.6707 -1.0244 -6.5847 16 7 6.5063 -2.0039 -6.3165 17 14 4.7030 -1.0335 -8.1824 18 1 5.4779 -0.3281 -9.2345 19 1 4.4577 -2.4360 -8.6046 20 1 3.4039 -0.3437 -7.9781 21 6 5.9266 1.2635 -3.5885 22 6 6.7468 1.2850 -2.2949 23 6 3.6031 -1.1990 0.0008 24 6 2.2066 -1.2081 0.0005 25 6 1.4956 -2.4512 0.0005 26 7 0.9315 -3.4371 0.0015 27 1 -0.3634 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6585 2.1292 -0.0004 31 1 4.1181 2.1332 0.0102 32 1 7.8323 -1.3337 -2.5316 33 1 6.4650 -2.0803 -1.6653 34 1 4.8844 -1.2333 -3.3443 35 1 6.1833 -2.1246 -4.1736 36 1 7.3566 0.0247 -4.6189 37 1 6.6199 -2.7313 -6.9482 38 1 4.8642 1.2433 -3.3453 39 1 6.1486 2.1552 -4.1749 40 1 6.4219 2.1167 -1.6699 41 1 7.8046 1.3978 -2.5323 42 1 4.1506 -2.1299 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201309697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:59 Heat of formation + Delta-G solvation = -27.272937 kcal Electronic energy + Delta-G solvation = -26971.270687 eV Core-core repulsion = 23235.979997 eV Total energy + Delta-G solvation = -3735.290690 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.94579 -37.79008 -37.20330 -36.60216 -35.75770 -33.48217 -33.41573 -31.68891 -30.92405 -30.12588 -27.82614 -25.80216 -24.22647 -22.64686 -22.44643 -22.24088 -20.17931 -19.23516 -18.25007 -17.31385 -16.76541 -16.45704 -16.23858 -15.59779 -15.35232 -14.71767 -14.59782 -14.32402 -14.05660 -13.53270 -13.40420 -13.39716 -13.21809 -13.06262 -12.91643 -12.82915 -12.75139 -12.47208 -12.31895 -12.19887 -12.03500 -11.97419 -11.66558 -11.45118 -11.06690 -10.98341 -10.82441 -10.66253 -10.43486 -10.11181 -9.64953 -9.48555 -9.30935 -9.22574 -9.03965 -8.46469 -8.30863 -6.05052 -4.11377 0.26211 0.52303 0.73823 2.46469 2.53375 3.10998 3.25843 3.33681 3.35661 3.45941 3.59330 3.85451 4.27941 4.33604 4.38413 4.43844 4.72627 4.96332 5.09157 5.13122 5.18481 5.22295 5.24969 5.47029 5.57993 5.64492 5.69486 5.77331 5.83873 5.95306 6.02741 6.09353 6.26463 6.36157 6.37141 6.38399 6.66129 6.83683 7.01510 7.12145 7.27273 7.36229 7.66742 7.90669 8.03481 8.37770 8.92272 9.53973 11.00312 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.004721 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.327823 B = 5930.054883 C = 7337.737044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.013 3.987 3 C -0.141 4.141 4 C 0.015 3.985 5 C -0.680 4.680 6 S 2.689 3.311 7 O -0.958 6.958 8 O -0.960 6.960 9 N -0.986 5.986 10 C 0.117 3.883 11 C -0.124 4.124 12 C 0.051 3.949 13 C -0.512 4.512 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.124 4.124 22 C 0.121 3.879 23 C 0.037 3.963 24 C -0.053 4.053 25 C 0.258 3.742 26 N -0.411 5.411 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.103 0.897 36 H 0.029 0.971 37 H 0.261 0.739 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.411 7.066 13.150 16.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.010 3.990 3 C -0.160 4.160 4 C -0.005 4.005 5 C -0.765 4.765 6 S 2.778 3.222 7 O -0.949 6.949 8 O -0.950 6.950 9 N -0.826 5.826 10 C -0.007 4.007 11 C -0.164 4.164 12 C 0.032 3.968 13 C -0.551 4.551 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.716 3.284 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.163 4.163 22 C -0.003 4.003 23 C 0.015 3.985 24 C -0.057 4.057 25 C -0.058 4.058 26 N -0.087 5.087 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.161 0.839 31 H 0.166 0.834 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.122 0.878 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.702 5.358 13.805 16.254 hybrid contribution -1.076 0.235 -1.372 1.759 sum -7.778 5.593 12.433 15.696 Atomic orbital electron populations 1.21045 0.89994 1.04173 1.03504 1.20211 0.96489 0.91660 0.90594 1.21100 0.94107 0.97654 1.03139 1.21155 0.94574 0.96950 0.87822 1.31258 1.28678 0.98693 1.17865 1.02095 0.73543 0.73496 0.73043 1.93571 1.80485 1.44085 1.76712 1.93554 1.81030 1.43632 1.76832 1.57593 1.80827 1.13772 1.30403 1.21867 1.01494 0.82113 0.95266 1.22106 0.96813 1.04451 0.92998 1.18581 0.97096 0.88810 0.92294 1.21191 1.24386 1.07074 1.02413 0.92787 1.24947 0.95251 0.95645 0.98057 1.69830 1.36079 1.10974 1.35997 0.86662 0.80441 0.77183 0.84092 1.20717 1.21301 1.20072 1.22017 0.98599 1.01180 0.94523 1.21576 1.01172 0.82951 0.94645 1.20916 0.92299 0.97708 0.87532 1.15901 0.92185 0.86885 1.10757 1.25462 0.93631 0.92786 0.93899 1.81257 1.08384 1.10350 1.08661 0.89668 0.89793 0.90949 0.83910 0.83437 0.91190 0.90913 0.94290 0.87846 0.95322 0.92950 0.92934 0.92106 0.90647 0.91173 0.83273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 9.61 36.00 0.35 -0.60 16 2 C 0.01 0.13 5.91 -104.21 -0.62 -0.49 16 3 C -0.14 -1.25 9.69 -39.64 -0.38 -1.63 16 4 C 0.01 0.16 9.52 -39.49 -0.38 -0.22 16 5 C -0.68 -8.54 5.97 -39.64 -0.24 -8.78 16 6 S 2.69 38.94 5.69 -107.50 -0.61 38.33 16 7 O -0.96 -15.82 15.98 -57.17 -0.91 -16.74 16 8 O -0.96 -14.88 15.98 -57.17 -0.91 -15.79 16 9 N -0.99 -15.30 3.28 -113.27 -0.37 -15.67 16 10 C 0.12 2.01 6.41 -3.49 -0.02 1.98 16 11 C -0.12 -2.59 5.17 -26.39 -0.14 -2.73 16 12 C 0.05 1.13 2.06 -91.74 -0.19 0.94 16 13 C -0.51 -13.00 8.56 -34.44 -0.29 -13.30 16 14 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 15 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 16 N -0.89 -23.93 11.31 55.43 0.63 -23.31 16 17 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 21 C -0.12 -2.21 5.30 -26.61 -0.14 -2.35 16 22 C 0.12 1.83 6.38 -3.71 -0.02 1.80 16 23 C 0.04 0.47 9.23 -39.17 -0.36 0.10 16 24 C -0.05 -0.62 5.73 -106.93 -0.61 -1.24 16 25 C 0.26 3.34 13.80 -22.47 -0.31 3.03 16 26 N -0.41 -6.07 18.54 41.84 0.78 -5.30 16 27 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.07 0.60 7.09 -51.93 -0.37 0.24 16 30 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 31 H 0.15 1.30 7.60 -52.48 -0.40 0.90 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.15 7.12 -51.93 -0.37 0.78 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 2.47 6.03 -51.93 -0.31 2.15 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 0.96 7.13 -51.93 -0.37 0.59 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.15 1.78 7.61 -52.49 -0.40 1.39 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -30.63 362.03 -9.99 -40.62 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.56 Total: -1.09 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -3.45 Total: -21.94 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 1.03 Total: -44.27 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.83 Total: -32.53 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 38.94 SS G_CDS: -0.61 Total: 38.33 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.63 -9.99 -40.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201309697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.351 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds