Wall clock time and date at job start Tue Mar 31 2020 17:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37966 * 120.07897 * 2 1 4 4 C 1.38348 * 120.15374 * 179.72208 * 3 2 1 5 5 C 1.38385 * 120.29991 * 0.51860 * 4 3 2 6 6 S 1.76204 * 119.91813 * 179.76065 * 5 4 3 7 7 O 1.42105 * 106.39972 * 156.18091 * 6 5 4 8 8 O 1.42098 * 106.40426 * 23.26264 * 6 5 4 9 9 N 1.65595 * 107.21987 * 269.71976 * 6 5 4 10 10 C 1.46925 * 120.63264 * 269.72689 * 9 6 5 11 11 C 1.53624 * 108.54476 * 126.36850 * 10 9 6 12 12 C 1.53036 * 109.24529 * 54.85320 * 11 10 9 13 13 C 1.50696 * 109.45348 * 178.49593 * 12 11 10 14 14 H 1.07999 * 120.00132 * 120.05368 * 13 12 11 15 15 C 1.37877 * 120.00024 * 300.06607 * 13 12 11 16 16 N 1.31514 * 120.00094 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00225 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47147 * 89.99796 * 17 15 13 19 19 H 1.48504 * 109.47310 * 210.00200 * 17 15 13 20 20 H 1.48501 * 109.47022 * 329.99894 * 17 15 13 21 21 C 1.53034 * 109.53843 * 298.51529 * 12 11 10 22 22 C 1.46933 * 120.62849 * 90.00170 * 9 6 5 23 23 C 1.37922 * 120.15438 * 359.48303 * 5 4 3 24 24 C 1.39610 * 120.07894 * 179.97438 * 2 1 3 25 25 C 1.43206 * 120.15188 * 0.02562 * 24 2 1 26 26 N 3.48498 * 80.49546 * 179.97438 * 2 1 3 27 27 H 1.09007 * 109.47220 * 270.01644 * 1 2 3 28 28 H 1.09001 * 109.47181 * 30.01595 * 1 2 3 29 29 H 1.09000 * 109.47403 * 150.01903 * 1 2 3 30 30 H 1.08003 * 119.92669 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.84682 * 180.27326 * 4 3 2 32 32 H 1.09004 * 109.58173 * 246.20142 * 10 9 6 33 33 H 1.08999 * 109.58418 * 6.62073 * 10 9 6 34 34 H 1.08999 * 109.63032 * 294.86137 * 11 10 9 35 35 H 1.09001 * 109.45693 * 174.73978 * 11 10 9 36 36 H 1.09003 * 109.45938 * 58.52930 * 12 11 10 37 37 H 0.97000 * 120.00287 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.49815 * 301.41151 * 21 12 11 39 39 H 1.09004 * 109.52487 * 181.33183 * 21 12 11 40 40 H 1.08994 * 109.58440 * 353.37472 * 22 9 6 41 41 H 1.08995 * 109.58385 * 113.65925 * 22 9 6 42 42 H 1.07997 * 120.07423 * 180.27735 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5819 1.1957 0.0058 5 6 4.2817 0.0018 0.0008 6 16 6.0436 0.0159 0.0019 7 8 6.4545 -1.2304 0.5471 8 8 6.4346 1.2689 0.5462 9 7 6.5348 0.0192 -1.5795 10 6 6.7728 -1.2434 -2.2922 11 6 5.9469 -1.2365 -3.5875 12 6 6.2893 0.0161 -4.3973 13 6 5.5090 0.0091 -5.6865 14 1 4.8229 0.8136 -5.9069 15 6 5.6707 -1.0244 -6.5847 16 7 6.5063 -2.0039 -6.3165 17 14 4.7030 -1.0335 -8.1824 18 1 5.4779 -0.3281 -9.2345 19 1 4.4577 -2.4360 -8.6046 20 1 3.4039 -0.3437 -7.9781 21 6 5.9266 1.2635 -3.5885 22 6 6.7468 1.2850 -2.2949 23 6 3.6031 -1.1990 0.0008 24 6 2.2066 -1.2081 0.0005 25 6 1.4956 -2.4512 0.0005 26 7 0.9315 -3.4371 0.0015 27 1 -0.3634 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6585 2.1292 -0.0004 31 1 4.1181 2.1332 0.0102 32 1 7.8323 -1.3337 -2.5316 33 1 6.4650 -2.0803 -1.6653 34 1 4.8844 -1.2333 -3.3443 35 1 6.1833 -2.1246 -4.1736 36 1 7.3566 0.0247 -4.6189 37 1 6.6199 -2.7313 -6.9482 38 1 4.8642 1.2433 -3.3453 39 1 6.1486 2.1552 -4.1749 40 1 6.4219 2.1167 -1.6699 41 1 7.8046 1.3978 -2.5323 42 1 4.1506 -2.1299 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201309697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:59 Heat of formation + Delta-G solvation = -45.167729 kcal Electronic energy + Delta-G solvation = -26972.046664 eV Core-core repulsion = 23235.979997 eV Total energy + Delta-G solvation = -3736.066666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.77843 -39.24156 -38.40679 -37.64419 -36.96672 -35.24457 -34.19409 -32.58532 -32.53273 -31.61018 -28.54569 -27.58110 -25.09679 -24.14763 -23.88074 -23.16214 -21.32263 -20.55827 -19.49216 -18.67902 -18.08671 -17.71137 -17.38662 -16.55520 -16.45028 -16.43200 -15.56640 -15.35382 -15.11950 -14.93731 -14.83447 -14.44398 -14.36677 -14.29638 -14.20439 -14.05834 -13.68460 -13.46530 -13.35664 -13.27087 -13.22261 -13.20487 -12.90041 -12.79867 -12.55384 -12.46008 -12.37872 -12.03867 -11.88780 -11.80771 -11.35390 -10.91700 -10.74150 -10.35987 -10.22125 -10.15855 -9.79156 -8.02771 -6.15037 -0.71330 -0.47068 -0.14761 1.41829 1.44728 1.44904 1.51986 1.61851 1.97202 2.46382 2.52086 2.65155 2.76293 3.24144 3.25774 3.57019 3.66613 3.83582 3.93162 4.17394 4.35526 4.36709 4.48264 4.52401 4.57011 4.67637 4.71824 4.73180 4.79297 4.82362 4.88434 4.95894 5.02139 5.11691 5.19658 5.21705 5.39188 5.42608 5.61512 5.62612 5.70778 5.75879 6.10398 6.25317 6.27210 6.46619 6.97867 7.52815 9.00266 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.004721 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.327823 B = 5930.054883 C = 7337.737044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.021 3.979 3 C -0.131 4.131 4 C 0.013 3.987 5 C -0.690 4.690 6 S 2.704 3.296 7 O -0.984 6.984 8 O -0.968 6.968 9 N -0.989 5.989 10 C 0.126 3.874 11 C -0.115 4.115 12 C 0.044 3.956 13 C -0.525 4.525 14 H 0.053 0.947 15 C 0.015 3.985 16 N -0.915 5.915 17 Si 0.942 3.058 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.270 1.270 21 C -0.116 4.116 22 C 0.122 3.878 23 C 0.023 3.977 24 C -0.070 4.070 25 C 0.276 3.724 26 N -0.451 5.451 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.057 0.943 30 H 0.185 0.815 31 H 0.169 0.831 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.035 0.965 35 H 0.069 0.931 36 H 0.000 1.000 37 H 0.258 0.742 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.049 9.637 14.076 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.018 3.982 3 C -0.149 4.149 4 C -0.007 4.007 5 C -0.778 4.778 6 S 2.797 3.203 7 O -0.974 6.974 8 O -0.958 6.958 9 N -0.828 5.828 10 C 0.001 3.999 11 C -0.155 4.155 12 C 0.026 3.974 13 C -0.563 4.563 14 H 0.071 0.929 15 C -0.184 4.184 16 N -0.555 5.555 17 Si 0.769 3.231 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.194 1.194 21 C -0.155 4.155 22 C -0.003 4.003 23 C 0.001 3.999 24 C -0.074 4.074 25 C -0.039 4.039 26 N -0.127 5.127 27 H 0.121 0.879 28 H 0.128 0.872 29 H 0.076 0.924 30 H 0.202 0.798 31 H 0.187 0.813 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.018 0.982 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.305 7.945 14.731 18.684 hybrid contribution -0.625 -0.503 -1.638 1.824 sum -8.930 7.442 13.092 17.508 Atomic orbital electron populations 1.21153 0.88124 1.04729 1.04761 1.20588 0.97860 0.91064 0.88663 1.21546 0.93472 0.98817 1.01077 1.21548 0.95621 0.96799 0.86737 1.30847 1.26946 0.99720 1.20237 1.01427 0.74038 0.72696 0.72138 1.93537 1.81632 1.45239 1.77031 1.93538 1.81843 1.43715 1.76707 1.57552 1.81508 1.13147 1.30576 1.21599 1.00585 0.83669 0.94016 1.21868 0.97083 1.02374 0.94169 1.18587 0.94872 0.91675 0.92306 1.21613 1.24258 1.06659 1.03780 0.92914 1.25626 0.96246 0.95664 1.00835 1.69973 1.37374 1.11435 1.36728 0.85809 0.79483 0.76852 0.80992 1.20407 1.21640 1.19417 1.21874 0.99371 0.98938 0.95284 1.21638 1.01083 0.83670 0.93893 1.20941 0.92868 0.97779 0.88294 1.16016 0.91900 0.87182 1.12313 1.25683 0.92808 0.92664 0.92737 1.81262 1.09743 1.11361 1.10286 0.87924 0.87241 0.92372 0.79808 0.81343 0.91521 0.89689 0.94623 0.91277 0.98221 0.93292 0.92351 0.91478 0.87398 0.90851 0.83884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 9.61 71.23 0.68 -0.78 16 2 C 0.02 0.34 5.91 -19.60 -0.12 0.22 16 3 C -0.13 -1.72 9.69 22.23 0.22 -1.51 16 4 C 0.01 0.22 9.52 22.33 0.21 0.43 16 5 C -0.69 -16.00 5.97 22.23 0.13 -15.87 16 6 S 2.70 74.44 5.69 -56.49 -0.32 74.11 16 7 O -0.98 -32.10 15.98 -128.00 -2.05 -34.14 16 8 O -0.97 -27.64 15.98 -128.00 -2.05 -29.69 16 9 N -0.99 -29.57 3.28 -512.28 -1.68 -31.25 16 10 C 0.13 4.38 6.41 86.51 0.55 4.93 16 11 C -0.12 -4.92 5.17 30.82 0.16 -4.76 16 12 C 0.04 1.98 2.06 -11.52 -0.02 1.96 16 13 C -0.52 -26.82 8.56 25.60 0.22 -26.60 16 14 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 15 C 0.01 0.78 5.30 84.65 0.45 1.23 16 16 N -0.91 -50.63 11.31 21.45 0.24 -50.39 16 17 Si 0.94 42.18 29.54 68.60 2.03 44.21 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 21 C -0.12 -3.95 5.30 30.67 0.16 -3.79 16 22 C 0.12 3.42 6.38 86.36 0.55 3.97 16 23 C 0.02 0.56 9.23 22.54 0.21 0.77 16 24 C -0.07 -1.55 5.73 -21.36 -0.12 -1.67 16 25 C 0.28 7.08 13.80 88.33 1.22 8.30 16 26 N -0.45 -13.42 18.54 19.00 0.35 -13.07 16 27 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.11 0.69 8.09 -2.39 -0.02 0.67 16 29 H 0.06 0.85 7.09 -2.39 -0.02 0.83 16 30 H 0.18 0.94 8.06 -2.91 -0.02 0.91 16 31 H 0.17 2.20 7.60 -2.91 -0.02 2.17 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.08 2.72 7.12 -2.39 -0.02 2.70 16 34 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 3.44 6.03 -2.39 -0.01 3.42 16 36 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.11 2.37 7.13 -2.39 -0.02 2.35 16 41 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.14 3.51 7.61 -2.91 -0.02 3.49 16 Total: -1.00 -67.49 362.03 2.07 -65.41 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 1.04 Total: 7.96 kcal Atomic # 6 Polarization: -37.66 SS G_CDS: 4.50 Total: -33.16 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -1.09 Total: -94.71 kcal Atomic # 8 Polarization: -59.74 SS G_CDS: -4.09 Total: -63.83 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 74.44 SS G_CDS: -0.32 Total: 74.11 kcal Total: -67.49 2.07 -65.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201309697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.247 kcal (2) G-P(sol) polarization free energy of solvation -67.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds