Wall clock time and date at job start Tue Mar 31 2020 17:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37972 * 120.07405 * 2 1 4 4 C 1.38345 * 120.14716 * 179.97438 * 3 2 1 5 5 C 1.38377 * 120.30774 * 359.97438 * 4 3 2 6 6 S 1.76199 * 119.92647 * 180.02562 * 5 4 3 7 7 O 1.42109 * 106.40136 * 23.51759 * 6 5 4 8 8 O 1.42100 * 106.40378 * 156.43201 * 6 5 4 9 9 N 1.65598 * 107.22147 * 269.97898 * 6 5 4 10 10 C 1.46929 * 120.63318 * 89.99100 * 9 6 5 11 11 C 1.53198 * 108.77078 * 126.37333 * 10 9 6 12 12 C 1.53036 * 109.31357 * 54.63805 * 11 10 9 13 13 C 1.53042 * 109.53763 * 298.63310 * 12 11 10 14 14 H 1.08997 * 109.49593 * 301.41494 * 13 12 11 15 15 C 1.50703 * 109.50042 * 181.35037 * 13 12 11 16 16 H 1.08000 * 120.00286 * 240.00335 * 15 13 12 17 17 C 1.37876 * 119.99834 * 59.99652 * 15 13 12 18 18 N 1.31513 * 120.00085 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99973 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47331 * 90.00146 * 19 17 15 21 21 H 1.48498 * 109.47019 * 209.99876 * 19 17 15 22 22 H 1.48505 * 109.46913 * 329.99872 * 19 17 15 23 23 C 1.46927 * 120.62733 * 269.71950 * 9 6 5 24 24 C 1.37925 * 120.15190 * 359.97438 * 5 4 3 25 25 C 1.39611 * 120.07672 * 179.97438 * 2 1 3 26 26 C 1.43197 * 120.15114 * 0.03594 * 25 2 1 27 27 N 3.48496 * 80.49643 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47365 * 90.00492 * 1 2 3 29 29 H 1.09007 * 109.46974 * 209.99952 * 1 2 3 30 30 H 1.08998 * 109.47183 * 329.99186 * 1 2 3 31 31 H 1.07992 * 119.92497 * 359.97438 * 3 2 1 32 32 H 1.07995 * 119.83988 * 179.97438 * 4 3 2 33 33 H 1.08993 * 109.58697 * 246.16238 * 10 9 6 34 34 H 1.08999 * 109.58158 * 6.59028 * 10 9 6 35 35 H 1.09002 * 109.49368 * 174.59068 * 11 10 9 36 36 H 1.08999 * 109.49394 * 294.68525 * 11 10 9 37 37 H 1.09003 * 109.45872 * 58.65383 * 12 11 10 38 38 H 1.09000 * 109.46136 * 178.61569 * 12 11 10 39 39 H 0.97001 * 119.99954 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.58793 * 353.41826 * 23 9 6 41 41 H 1.09000 * 109.58622 * 113.84162 * 23 9 6 42 42 H 1.08007 * 120.07484 * 179.72500 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1957 0.0005 5 6 4.2817 0.0020 0.0016 6 16 6.0436 0.0160 0.0030 7 8 6.4345 1.2694 0.5467 8 8 6.4544 -1.2300 0.5489 9 7 6.5351 0.0186 -1.5784 10 6 6.7471 1.2840 -2.2944 11 6 8.1567 1.2807 -2.8944 12 6 8.3355 0.0312 -3.7599 13 6 8.1771 -1.2194 -2.8921 14 1 8.9140 -1.2008 -2.0892 15 6 8.3861 -2.4487 -3.7384 16 1 7.5949 -3.1771 -3.8373 17 6 9.5874 -2.6434 -4.3864 18 7 10.5510 -1.7565 -4.2656 19 14 9.8463 -4.1668 -5.4360 20 1 9.4235 -3.8844 -6.8312 21 1 11.2834 -4.5403 -5.4203 22 1 9.0377 -5.2868 -4.8908 23 6 6.7732 -1.2445 -2.2903 24 6 3.6032 -1.1988 0.0027 25 6 2.2067 -1.2081 0.0005 26 6 1.4956 -2.4511 0.0003 27 7 0.9316 -3.4371 0.0015 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6584 2.1292 -0.0004 32 1 4.1180 2.1332 0.0001 33 1 6.0106 1.3803 -3.0921 34 1 6.6476 2.1179 -1.5997 35 1 8.2927 2.1710 -3.5084 36 1 8.8938 1.2757 -2.0915 37 1 7.5822 0.0244 -4.5477 38 1 9.3292 0.0389 -4.2078 39 1 11.3962 -1.8937 -4.7213 40 1 6.6908 -2.0782 -1.5930 41 1 6.0389 -1.3585 -3.0877 42 1 4.1507 -2.1298 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201310529.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:34 Heat of formation + Delta-G solvation = -45.881645 kcal Electronic energy + Delta-G solvation = -26560.195253 eV Core-core repulsion = 22824.097629 eV Total energy + Delta-G solvation = -3736.097624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.79969 -39.27249 -38.41385 -37.64858 -36.95494 -35.18215 -34.20562 -32.68920 -32.54952 -31.84487 -28.53847 -27.01433 -25.17666 -25.07525 -23.30970 -23.17647 -21.23518 -20.89129 -19.23988 -18.76713 -18.02528 -17.71111 -17.38637 -16.69572 -16.43707 -16.36959 -15.57956 -15.33120 -15.16363 -15.05856 -14.82481 -14.40738 -14.36417 -14.31101 -14.19039 -14.05628 -13.80432 -13.36762 -13.28714 -13.24710 -13.20432 -13.18555 -12.88651 -12.75535 -12.66711 -12.51954 -12.45731 -11.88607 -11.82148 -11.74349 -11.53000 -11.02776 -10.73868 -10.38636 -10.26275 -10.17790 -9.73481 -8.05141 -6.19617 -0.73928 -0.49244 -0.17430 1.43315 1.45231 1.45581 1.54425 1.61676 2.00743 2.46060 2.54498 2.63347 2.77358 3.21925 3.25203 3.56403 3.66508 3.88753 3.93555 4.16516 4.33550 4.34810 4.40889 4.52907 4.61274 4.68672 4.69018 4.72329 4.81892 4.85302 4.92903 4.96158 5.01986 5.13400 5.14763 5.21507 5.34013 5.41904 5.57438 5.61326 5.69014 5.78083 6.03212 6.22347 6.27753 6.41472 6.92681 7.48357 8.98599 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.014012 B = 0.003661 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.751320 B = 7645.509485 C = 8791.360606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.024 3.976 3 C -0.127 4.127 4 C 0.014 3.986 5 C -0.684 4.684 6 S 2.694 3.306 7 O -0.972 6.972 8 O -0.992 6.992 9 N -0.994 5.994 10 C 0.120 3.880 11 C -0.129 4.129 12 C -0.104 4.104 13 C 0.034 3.966 14 H -0.012 1.012 15 C -0.533 4.533 16 H 0.059 0.941 17 C 0.015 3.985 18 N -0.915 5.915 19 Si 0.952 3.048 20 H -0.273 1.273 21 H -0.288 1.288 22 H -0.270 1.270 23 C 0.135 3.865 24 C 0.022 3.978 25 C -0.066 4.066 26 C 0.276 3.724 27 N -0.450 5.450 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.188 0.812 32 H 0.170 0.830 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.038 0.962 37 H 0.041 0.959 38 H 0.058 0.942 39 H 0.259 0.741 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.793 12.482 6.387 24.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.022 3.978 3 C -0.145 4.145 4 C -0.006 4.006 5 C -0.773 4.773 6 S 2.789 3.211 7 O -0.963 6.963 8 O -0.983 6.983 9 N -0.833 5.833 10 C -0.004 4.004 11 C -0.168 4.168 12 C -0.142 4.142 13 C 0.014 3.986 14 H 0.006 0.994 15 C -0.572 4.572 16 H 0.077 0.923 17 C -0.184 4.184 18 N -0.554 5.554 19 Si 0.778 3.222 20 H -0.198 1.198 21 H -0.214 1.214 22 H -0.195 1.195 23 C 0.010 3.990 24 C 0.000 4.000 25 C -0.071 4.071 26 C -0.039 4.039 27 N -0.126 5.126 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.205 0.795 32 H 0.187 0.813 33 H 0.111 0.889 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.957 10.984 7.077 23.854 hybrid contribution 0.641 -1.119 -0.822 1.529 sum -19.316 9.865 6.255 22.573 Atomic orbital electron populations 1.21165 0.87921 1.04925 1.04769 1.20607 0.97905 0.90899 0.88424 1.21561 0.93171 0.98912 1.00875 1.21560 0.95699 0.96588 0.86748 1.30683 1.25968 0.99982 1.20649 1.01560 0.74601 0.72545 0.72406 1.93521 1.82130 1.43801 1.76798 1.93539 1.81874 1.45676 1.77166 1.57523 1.81456 1.13349 1.30936 1.21680 0.97463 0.83715 0.97560 1.21902 0.96637 0.99005 0.99273 1.21391 1.01587 0.93717 0.97526 1.18846 0.91399 0.94434 0.93928 0.99370 1.21502 0.99636 1.06628 1.29417 0.92317 1.25684 0.95872 0.99020 0.97833 1.70025 1.04964 1.36224 1.44209 0.85655 0.76993 0.80231 0.79338 1.19836 1.21397 1.19502 1.21432 0.98701 0.82946 0.95887 1.20941 0.93009 0.97660 0.88411 1.15980 0.91567 0.87277 1.12257 1.25663 0.92794 0.92643 0.92800 1.81282 1.09859 1.11276 1.10185 0.88245 0.92125 0.86893 0.79464 0.81287 0.88910 0.87544 0.89597 0.94288 0.93986 0.92367 0.93134 0.91092 0.90660 0.84230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 9.61 71.24 0.68 -0.25 16 2 C 0.02 0.30 5.91 -19.60 -0.12 0.18 16 3 C -0.13 -1.18 9.69 22.23 0.22 -0.96 16 4 C 0.01 0.20 9.52 22.33 0.21 0.41 16 5 C -0.68 -14.90 5.97 22.23 0.13 -14.77 16 6 S 2.69 81.26 5.73 -56.49 -0.32 80.94 16 7 O -0.97 -30.53 15.86 -128.00 -2.03 -32.56 16 8 O -0.99 -37.80 15.86 -128.00 -2.03 -39.83 16 9 N -0.99 -31.67 3.30 -513.83 -1.69 -33.36 16 10 C 0.12 3.24 6.48 86.36 0.56 3.80 16 11 C -0.13 -4.42 6.08 30.67 0.19 -4.24 16 12 C -0.10 -4.58 4.96 30.62 0.15 -4.43 16 13 C 0.03 1.66 2.24 -11.60 -0.03 1.63 16 14 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 15 C -0.53 -28.61 8.57 25.60 0.22 -28.39 16 16 H 0.06 3.04 7.75 -2.91 -0.02 3.02 16 17 C 0.01 0.81 5.30 84.65 0.45 1.26 16 18 N -0.91 -52.36 11.31 21.45 0.24 -52.12 16 19 Si 0.95 43.25 29.54 68.60 2.03 45.27 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 C 0.14 5.23 5.67 86.22 0.49 5.72 16 24 C 0.02 0.49 9.23 22.54 0.21 0.70 16 25 C -0.07 -1.26 5.73 -21.36 -0.12 -1.38 16 26 C 0.28 6.26 13.80 88.33 1.22 7.48 16 27 N -0.45 -12.20 18.54 19.00 0.35 -11.85 16 28 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.62 7.09 -2.38 -0.02 0.60 16 30 H 0.11 0.19 8.09 -2.39 -0.02 0.17 16 31 H 0.19 0.16 8.06 -2.91 -0.02 0.14 16 32 H 0.17 1.77 7.60 -2.91 -0.02 1.74 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.11 2.34 6.92 -2.39 -0.02 2.33 16 35 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 37 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 3.00 6.04 -2.39 -0.01 2.98 16 39 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 40 H 0.07 2.83 6.91 -2.39 -0.02 2.82 16 41 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.14 3.37 7.61 -2.91 -0.02 3.34 16 Total: -1.00 -73.08 361.56 2.05 -71.03 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 1.04 Total: 5.72 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 4.46 Total: -33.24 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -1.10 Total: -97.33 kcal Atomic # 8 Polarization: -68.33 SS G_CDS: -4.06 Total: -72.39 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: 81.26 SS G_CDS: -0.32 Total: 80.94 kcal Total: -73.08 2.05 -71.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201310529.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.148 kcal (2) G-P(sol) polarization free energy of solvation -73.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds