Wall clock time and date at job start Tue Mar 31 2020 17:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 113.99800 * 2 1 4 4 C 1.50705 * 109.47389 * 180.02562 * 3 2 1 5 5 N 1.29997 * 127.33490 * 89.97410 * 4 3 2 6 6 O 1.20657 * 112.32985 * 180.02562 * 5 4 3 7 7 C 1.33514 * 113.15923 * 0.02562 * 6 5 4 8 8 C 1.37446 * 106.32550 * 0.25647 * 7 6 5 9 9 C 1.47284 * 128.57572 * 179.74084 * 8 7 6 10 10 O 1.21627 * 120.00266 * 174.07009 * 9 8 7 11 11 N 1.34779 * 119.99895 * 354.07584 * 9 8 7 12 12 C 1.36988 * 120.00185 * 184.96020 * 11 9 8 13 13 H 1.08001 * 120.00135 * 215.57576 * 12 11 9 14 14 C 1.38910 * 119.99990 * 35.56800 * 12 11 9 15 15 N 1.31430 * 119.99921 * 22.47005 * 14 12 11 16 16 Si 1.86797 * 120.00257 * 202.46912 * 14 12 11 17 17 H 1.48502 * 109.47165 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47558 * 120.00187 * 16 14 12 19 19 H 1.48497 * 109.47331 * 240.00408 * 16 14 12 20 20 C 1.39761 * 119.99801 * 4.95758 * 11 9 8 21 21 C 1.38991 * 120.05522 * 89.73186 * 20 11 9 22 22 C 1.38042 * 119.94605 * 179.69983 * 21 20 11 23 23 C 1.38537 * 120.05245 * 0.58962 * 22 21 20 24 24 F 1.35098 * 119.94986 * 179.70271 * 23 22 21 25 25 C 1.38500 * 120.11000 * 359.68269 * 23 22 21 26 26 C 1.38080 * 120.05298 * 0.02562 * 25 23 22 27 27 C 1.50708 * 120.02558 * 179.97438 * 26 25 23 28 28 H 1.09006 * 109.47376 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47534 * 299.99844 * 1 2 3 30 30 H 1.09005 * 109.47495 * 59.99992 * 1 2 3 31 31 H 1.08998 * 109.47181 * 60.00126 * 3 2 1 32 32 H 1.09001 * 109.47695 * 300.00039 * 3 2 1 33 33 H 1.08002 * 126.84122 * 180.02562 * 7 6 5 34 34 H 0.96997 * 119.99717 * 183.22099 * 15 14 12 35 35 H 1.08000 * 120.02693 * 359.96655 * 21 20 11 36 36 H 1.07995 * 119.97202 * 180.29424 * 22 21 20 37 37 H 1.08004 * 119.97933 * 180.02562 * 25 23 22 38 38 H 1.08997 * 109.47155 * 270.01912 * 27 26 25 39 39 H 1.09000 * 109.47033 * 30.02384 * 27 26 25 40 40 H 1.08999 * 109.46679 * 150.02169 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2979 1.1241 -1.0346 6 8 5.4598 1.0318 -0.7227 7 6 5.6491 1.0162 0.5989 8 6 4.4019 1.1090 1.1689 9 6 4.0443 1.1291 2.5976 10 8 2.8918 1.3250 2.9333 11 7 4.9942 0.9305 3.5329 12 6 4.6467 0.8478 4.8553 13 1 5.3032 1.2504 5.6125 14 6 3.4496 0.2462 5.2226 15 7 2.8702 -0.6122 4.4134 16 14 2.6635 0.6573 6.8665 17 1 3.5077 1.6447 7.5858 18 1 1.3136 1.2331 6.6395 19 1 2.5438 -0.5787 7.6808 20 6 6.3338 0.8089 3.1535 21 6 7.1390 1.9387 3.0701 22 6 8.4635 1.8153 2.7011 23 6 8.9871 0.5680 2.4022 24 9 10.2820 0.4503 2.0355 25 6 8.1853 -0.5587 2.4790 26 6 6.8614 -0.4411 2.8535 27 6 5.9893 -1.6675 2.9363 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8463 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 6.5938 0.9414 1.1169 34 1 2.0114 -0.9968 4.6487 35 1 6.7300 2.9119 3.2980 36 1 9.0908 2.6923 2.6408 37 1 8.5957 -1.5301 2.2459 38 1 5.5119 -1.8396 1.9717 39 1 6.6007 -2.5309 3.1985 40 1 5.2247 -1.5186 3.6988 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330576180.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:18 Heat of formation + Delta-G solvation = -3.038577 kcal Electronic energy + Delta-G solvation = -30031.612031 eV Core-core repulsion = 25731.159046 eV Total energy + Delta-G solvation = -4300.452985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.116 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.68808 -44.37709 -39.99546 -37.77428 -37.40009 -34.31484 -33.39551 -32.34518 -32.28947 -31.13359 -28.93933 -27.97037 -26.57247 -25.72713 -25.19146 -23.41990 -22.30682 -21.38027 -20.77147 -19.90397 -17.51451 -17.43143 -17.26430 -16.88091 -16.46813 -16.31973 -15.93215 -15.42601 -15.32803 -14.87180 -14.67579 -14.16211 -14.08899 -13.74097 -13.59970 -13.28042 -12.89096 -12.72886 -12.64384 -12.29251 -12.13768 -12.00962 -11.59147 -11.28076 -11.23435 -11.11252 -11.01021 -10.96109 -10.87557 -10.69522 -10.33215 -9.66662 -9.41003 -9.14875 -9.05335 -8.74905 -8.62298 -8.05344 -7.49084 -6.35422 -4.06861 1.33593 1.42256 1.77085 2.16666 3.21420 3.30503 3.32521 3.52582 3.75714 3.98883 4.16047 4.44929 4.47624 4.59126 4.66658 4.91747 4.98204 5.05459 5.15025 5.39756 5.42416 5.49248 5.56452 5.60336 5.65169 5.66429 5.79008 5.89633 6.03051 6.08825 6.12325 6.17643 6.30068 6.32578 6.41530 6.48651 6.83557 7.01729 7.18759 7.39805 7.43525 8.00558 8.63038 8.69151 8.91928 9.35037 9.96288 10.70724 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.008989 B = 0.006705 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.285011 B = 4174.778820 C = 6490.380190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.378 6.378 3 C 0.149 3.851 4 C 0.050 3.950 5 N -0.353 5.353 6 O 0.092 5.908 7 C -0.063 4.063 8 C -0.190 4.190 9 C 0.544 3.456 10 O -0.508 6.508 11 N -0.406 5.406 12 C -0.342 4.342 13 H 0.089 0.911 14 C 0.071 3.929 15 N -0.805 5.805 16 Si 0.913 3.087 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.285 1.285 20 C 0.138 3.862 21 C -0.102 4.102 22 C -0.158 4.158 23 C 0.083 3.917 24 F -0.145 7.145 25 C -0.156 4.156 26 C -0.053 4.053 27 C -0.122 4.122 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.036 0.964 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.223 0.777 34 H 0.270 0.730 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.924 1.760 -5.237 7.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.295 6.295 3 C 0.072 3.928 4 C -0.113 4.113 5 N -0.059 5.059 6 O 0.027 5.973 7 C -0.144 4.144 8 C -0.198 4.198 9 C 0.333 3.667 10 O -0.385 6.385 11 N -0.125 5.125 12 C -0.466 4.466 13 H 0.107 0.893 14 C -0.142 4.142 15 N -0.438 5.438 16 Si 0.740 3.260 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.211 1.211 20 C 0.047 3.953 21 C -0.122 4.122 22 C -0.177 4.177 23 C 0.064 3.936 24 F -0.123 7.123 25 C -0.175 4.175 26 C -0.054 4.054 27 C -0.178 4.178 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.239 0.761 34 H 0.080 0.920 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.072 1.543 -6.371 7.717 hybrid contribution -0.206 0.203 1.557 1.584 sum 3.866 1.746 -4.814 6.417 Atomic orbital electron populations 1.22686 0.80839 1.02633 0.99772 1.87940 1.19644 1.26561 1.95392 1.20475 0.84637 0.85881 1.01779 1.24270 0.97079 1.02535 0.87375 1.73505 0.89940 1.18352 1.24115 1.84482 1.21341 1.67301 1.24130 1.27191 1.01352 1.02814 0.83006 1.22918 0.91404 1.08226 0.97257 1.16363 0.86012 0.83076 0.81260 1.90606 1.18416 1.49229 1.80220 1.40742 1.00616 1.64529 1.06590 1.19138 1.07598 1.39605 0.80305 0.89317 1.25105 0.97721 0.93021 0.98382 1.69901 1.15555 1.21240 1.37084 0.86128 0.79748 0.78231 0.81934 1.19443 1.20479 1.21098 1.18133 0.88679 0.91613 0.96900 1.21416 0.92481 0.99490 0.98765 1.20958 0.96157 0.96286 1.04303 1.17655 0.78757 0.94544 1.02614 1.91464 1.34543 1.96903 1.89429 1.20988 0.93719 0.98137 1.04676 1.20346 0.93243 0.96285 0.95564 1.20898 0.99791 0.92698 1.04418 0.89725 0.93549 0.94589 0.89275 0.92426 0.76127 0.91997 0.84522 0.84709 0.84729 0.91602 0.92415 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 11.01 101.05 1.11 1.66 16 2 O -0.38 -7.45 10.69 -35.23 -0.38 -7.82 16 3 C 0.15 2.81 6.23 36.01 0.22 3.04 16 4 C 0.05 1.02 7.21 -79.75 -0.58 0.44 16 5 N -0.35 -6.85 12.01 34.79 0.42 -6.44 16 6 O 0.09 1.67 11.06 18.60 0.21 1.87 16 7 C -0.06 -1.15 10.29 30.44 0.31 -0.84 16 8 C -0.19 -4.07 6.34 -102.90 -0.65 -4.72 16 9 C 0.54 13.24 6.85 -12.58 -0.09 13.15 16 10 O -0.51 -13.91 13.04 5.25 0.07 -13.84 16 11 N -0.41 -9.32 1.71 -60.14 -0.10 -9.42 16 12 C -0.34 -8.52 8.66 -15.00 -0.13 -8.65 16 13 H 0.09 2.15 7.93 -52.49 -0.42 1.73 16 14 C 0.07 1.80 4.25 -17.47 -0.07 1.73 16 15 N -0.81 -21.52 10.85 55.49 0.60 -20.92 16 16 Si 0.91 20.25 29.61 -169.99 -5.03 15.22 16 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 C 0.14 2.63 2.74 -83.70 -0.23 2.40 16 21 C -0.10 -1.63 8.73 -39.37 -0.34 -1.97 16 22 C -0.16 -2.15 9.68 -39.54 -0.38 -2.54 16 23 C 0.08 1.19 7.11 -39.37 -0.28 0.91 16 24 F -0.14 -2.02 17.26 2.25 0.04 -1.98 16 25 C -0.16 -2.30 9.30 -39.54 -0.37 -2.67 16 26 C -0.05 -0.92 4.39 -104.41 -0.46 -1.38 16 27 C -0.12 -2.26 9.77 36.01 0.35 -1.91 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 1.76 7.05 -51.93 -0.37 1.40 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.22 3.68 3.06 -52.49 -0.16 3.52 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.14 2.09 8.06 -52.49 -0.42 1.66 16 36 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 40 H 0.11 2.53 6.38 -51.93 -0.33 2.20 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -29.66 345.81 -4.76 -34.41 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.21 Total: 5.04 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -1.58 Total: -1.34 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.92 Total: -36.77 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.10 Total: -19.80 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.66 -4.76 -34.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330576180.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.375 kcal (2) G-P(sol) polarization free energy of solvation -29.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds