Wall clock time and date at job start Tue Mar 31 2020 18:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47300 * 23.02638 * 3 2 1 5 5 C 1.46500 * 120.00047 * 270.00191 * 4 3 2 6 6 C 1.50705 * 109.47433 * 263.11755 * 5 4 3 7 7 O 1.20830 * 119.99303 * 359.97438 * 6 5 4 8 8 O 1.34225 * 120.00293 * 179.97438 * 6 5 4 9 9 C 1.34779 * 120.00266 * 89.99947 * 4 3 2 10 10 O 1.21355 * 119.99827 * 4.04315 * 9 4 3 11 11 C 1.49344 * 120.00044 * 184.04196 * 9 4 3 12 12 O 1.21386 * 119.99956 * 354.24652 * 11 9 4 13 13 N 1.34777 * 119.99846 * 174.25080 * 11 9 4 14 14 C 1.39926 * 120.00127 * 179.97438 * 13 11 9 15 15 C 1.40459 * 125.97846 * 359.97438 * 14 13 11 16 16 C 1.35224 * 107.86757 * 179.71650 * 15 14 13 17 17 N 1.34992 * 107.87272 * 0.42464 * 16 15 14 18 18 C 1.46494 * 125.96996 * 179.83471 * 17 16 15 19 19 C 1.50706 * 109.46811 * 124.72010 * 18 17 16 20 20 H 1.07996 * 120.00023 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99535 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00116 * 359.73052 * 21 19 18 23 23 Si 1.86796 * 119.99599 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47168 * 179.72836 * 23 21 19 25 25 H 1.48496 * 109.47358 * 299.72504 * 23 21 19 26 26 H 1.48502 * 109.47274 * 59.72803 * 23 21 19 27 27 N 1.31276 * 125.98341 * 179.97438 * 14 13 11 28 28 H 4.40642 * 5.51328 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.46931 * 263.02884 * 3 2 1 30 30 H 1.08994 * 109.47534 * 143.02900 * 3 2 1 31 31 H 1.08998 * 109.47250 * 23.11839 * 5 4 3 32 32 H 1.09005 * 109.47474 * 143.11776 * 5 4 3 33 33 H 0.96705 * 116.99968 * 180.02562 * 8 6 5 34 34 H 0.96997 * 119.99738 * 0.02562 * 13 11 9 35 35 H 1.07999 * 126.06749 * 359.97438 * 15 14 13 36 36 H 1.07995 * 126.06136 * 180.26623 * 16 15 14 37 37 H 1.09004 * 109.47250 * 4.72248 * 18 17 16 38 38 H 1.09000 * 109.47450 * 244.72103 * 18 17 16 39 39 H 0.96998 * 120.00476 * 0.26366 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2703 -0.5403 5 6 3.3795 -2.4020 0.3572 6 6 4.8423 -2.4514 0.7163 7 8 5.6025 -1.6261 0.2680 8 8 5.3007 -3.4121 1.5340 9 6 3.3596 -1.3984 -1.8630 10 8 3.2275 -0.4406 -2.5964 11 6 3.7712 -2.7190 -2.4260 12 8 4.0047 -3.6496 -1.6824 13 7 3.8833 -2.8774 -3.7597 14 6 4.2695 -4.1146 -4.2873 15 6 4.5695 -5.2699 -3.5470 16 6 4.8913 -6.2505 -4.4207 17 7 4.8092 -5.7384 -5.6670 18 6 5.0799 -6.4594 -6.9131 19 6 3.8819 -6.3590 -7.8220 20 1 3.0064 -5.8130 -7.5030 21 6 3.9038 -6.9641 -9.0607 22 7 4.9719 -7.6245 -9.4512 23 14 2.4186 -6.8402 -10.1869 24 1 2.6957 -7.5650 -11.4531 25 1 1.2386 -7.4451 -9.5184 26 1 2.1409 -5.4121 -10.4845 27 7 4.4147 -4.3986 -5.5607 28 1 -1.0499 -0.0002 -0.0003 29 1 3.0092 0.1255 1.0201 30 1 3.0090 0.8218 -0.6180 31 1 2.7868 -2.2814 1.2640 32 1 3.0963 -3.3290 -0.1414 33 1 6.2464 -3.4026 1.7357 34 1 3.6971 -2.1336 -4.3538 35 1 4.5434 -5.3603 -2.4711 36 1 5.1677 -7.2631 -4.1664 37 1 5.2801 -7.5075 -6.6904 38 1 5.9476 -6.0206 -7.4058 39 1 5.7430 -7.6891 -8.8663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588397781.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:05 Heat of formation + Delta-G solvation = 7.785195 kcal Electronic energy + Delta-G solvation = -27857.036736 eV Core-core repulsion = 23576.973066 eV Total energy + Delta-G solvation = -4280.063670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.60065 -40.68397 -40.03193 -38.78170 -36.95082 -36.15129 -35.07240 -33.75749 -33.38449 -31.04422 -29.56810 -29.48668 -28.15222 -26.51934 -24.64531 -23.00581 -22.44012 -21.41332 -20.38774 -19.76275 -18.76090 -18.45981 -18.07475 -17.41640 -17.26496 -16.97309 -16.63887 -16.12721 -15.87623 -15.70728 -15.12810 -14.98934 -14.57873 -14.25891 -13.82637 -13.70229 -13.64394 -13.43074 -13.33787 -12.91851 -12.58122 -12.38591 -11.94925 -11.75143 -11.57249 -11.23294 -11.11148 -11.03587 -10.88054 -10.65484 -10.60999 -10.18138 -10.13396 -9.75362 -9.48231 -9.07480 -8.62056 -8.37444 -7.70455 -6.62265 -4.36799 0.95492 1.50022 1.95383 2.37969 2.42257 2.44642 2.67437 2.90298 3.09683 3.36092 3.38381 3.49302 3.53084 3.57895 3.94932 4.08985 4.38293 4.46773 4.70259 4.90891 4.98735 5.11126 5.12891 5.27943 5.51239 5.56122 5.62163 5.94371 6.14613 6.23104 6.25378 6.42401 6.47325 6.66758 7.03352 7.09767 7.17964 7.35271 7.59390 7.61528 7.71345 7.75597 8.28380 8.38539 8.56130 9.31383 10.75572 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.016799 B = 0.002619 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.318000 B =10688.230203 C =11818.842960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.217 4.217 3 C 0.226 3.774 4 N -0.573 5.573 5 C 0.102 3.898 6 C 0.473 3.527 7 O -0.513 6.513 8 O -0.511 6.511 9 C 0.528 3.472 10 O -0.496 6.496 11 C 0.518 3.482 12 O -0.501 6.501 13 N -0.592 5.592 14 C 0.250 3.750 15 C -0.281 4.281 16 C 0.053 3.947 17 N -0.312 5.312 18 C 0.248 3.752 19 C -0.610 4.610 20 H 0.064 0.936 21 C 0.024 3.976 22 N -0.903 5.903 23 Si 1.077 2.923 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.284 1.284 27 N -0.289 5.289 28 H 0.220 0.780 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.160 0.840 33 H 0.412 0.588 34 H 0.425 0.575 35 H 0.163 0.837 36 H 0.171 0.829 37 H 0.048 0.952 38 H 0.037 0.963 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.318 10.717 24.521 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.218 4.218 3 C 0.105 3.895 4 N -0.307 5.307 5 C -0.022 4.022 6 C 0.314 3.686 7 O -0.400 6.400 8 O -0.322 6.322 9 C 0.310 3.690 10 O -0.369 6.369 11 C 0.299 3.701 12 O -0.376 6.376 13 N -0.240 5.240 14 C -0.002 4.002 15 C -0.312 4.312 16 C -0.096 4.096 17 N -0.093 5.093 18 C 0.130 3.870 19 C -0.648 4.648 20 H 0.082 0.918 21 C -0.181 4.181 22 N -0.539 5.539 23 Si 0.903 3.097 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.211 1.211 27 N -0.120 5.120 28 H 0.237 0.763 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.177 0.823 33 H 0.271 0.729 34 H 0.262 0.738 35 H 0.180 0.820 36 H 0.188 0.812 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.008 10.746 21.618 24.656 hybrid contribution 1.096 0.498 2.190 2.499 sum -3.913 11.244 23.809 26.620 Atomic orbital electron populations 1.25038 0.95961 0.97736 0.99865 1.23315 0.94667 1.02431 1.01364 1.18382 0.83818 0.86079 1.01181 1.47271 1.64051 1.13617 1.05755 1.21610 0.89871 0.93554 0.97126 1.23740 0.92380 0.77626 0.74845 1.90752 1.58541 1.39657 1.51082 1.84481 1.33285 1.52135 1.62316 1.19893 0.77732 0.88744 0.82626 1.90806 1.48621 1.39518 1.57915 1.19789 0.79286 0.88522 0.82547 1.90583 1.47980 1.41561 1.57503 1.41960 1.63738 1.11829 1.06452 1.18992 1.03018 0.86233 0.92001 1.21509 1.17309 0.91202 1.01215 1.22592 1.02219 0.99976 0.84860 1.48890 1.47473 1.05971 1.07008 1.19825 0.98707 0.90213 0.78253 1.22097 1.01150 1.38493 1.03109 0.91768 1.25931 1.02687 0.92744 0.96719 1.70854 1.04540 1.39038 1.39427 0.83418 0.73805 0.76675 0.75761 1.20492 1.21202 1.21067 1.77440 1.23757 0.96426 1.14412 0.76288 0.87327 0.86502 0.85928 0.82264 0.72896 0.73783 0.81957 0.81187 0.93421 0.94572 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 19.25 29.55 0.57 -0.69 16 2 C -0.22 -1.85 13.68 -37.13 -0.51 -2.36 16 3 C 0.23 1.80 5.88 -6.83 -0.04 1.76 16 4 N -0.57 -5.72 2.00 -178.96 -0.36 -6.08 16 5 C 0.10 0.83 5.61 -5.19 -0.03 0.80 16 6 C 0.47 4.63 7.37 36.01 0.27 4.89 16 7 O -0.51 -6.74 17.02 -18.75 -0.32 -7.06 16 8 O -0.51 -3.82 13.42 -39.24 -0.53 -4.34 16 9 C 0.53 6.89 7.46 -11.63 -0.09 6.81 16 10 O -0.50 -7.34 16.04 5.49 0.09 -7.25 16 11 C 0.52 7.53 7.73 -11.63 -0.09 7.44 16 12 O -0.50 -7.24 9.51 5.47 0.05 -7.19 16 13 N -0.59 -9.66 5.43 -11.58 -0.06 -9.72 16 14 C 0.25 4.92 8.10 -154.55 -1.25 3.67 16 15 C -0.28 -5.18 9.60 -39.82 -0.38 -5.56 16 16 C 0.05 1.01 11.43 -17.24 -0.20 0.81 16 17 N -0.31 -7.08 3.67 -62.56 -0.23 -7.31 16 18 C 0.25 6.15 5.57 -5.19 -0.03 6.12 16 19 C -0.61 -16.95 9.24 -34.44 -0.32 -17.27 16 20 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 21 C 0.02 0.67 5.46 -17.82 -0.10 0.57 16 22 N -0.90 -26.05 13.65 55.43 0.76 -25.30 16 23 Si 1.08 24.74 29.90 -169.99 -5.08 19.66 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 N -0.29 -6.63 12.42 31.41 0.39 -6.24 16 28 H 0.22 0.93 7.80 -54.10 -0.42 0.51 16 29 H 0.11 0.55 8.07 -51.93 -0.42 0.13 16 30 H 0.12 1.00 7.37 -51.93 -0.38 0.62 16 31 H 0.12 0.54 8.02 -51.93 -0.42 0.13 16 32 H 0.16 1.42 5.39 -51.93 -0.28 1.14 16 33 H 0.41 1.59 9.10 45.56 0.41 2.01 16 34 H 0.42 6.42 8.31 -40.82 -0.34 6.08 16 35 H 0.16 2.73 5.91 -52.49 -0.31 2.42 16 36 H 0.17 2.56 8.06 -52.49 -0.42 2.13 16 37 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 38 H 0.04 0.94 8.00 -51.93 -0.42 0.52 16 39 H 0.27 7.51 7.22 -40.82 -0.29 7.22 16 LS Contribution 359.78 15.07 5.42 5.42 Total: -1.00 -36.19 359.78 -4.97 -41.16 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -2.91 Total: 7.27 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -2.20 Total: 6.98 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.50 Total: -54.64 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.71 Total: -25.84 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.19 -4.97 -41.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588397781.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.944 kcal (2) G-P(sol) polarization free energy of solvation -36.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds