Wall clock time and date at job start Tue Mar 31 2020 17:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38971 * 119.65333 * 2 1 4 4 C 1.37398 * 120.18455 * 180.02562 * 3 2 1 5 5 C 1.39888 * 120.18157 * 0.02562 * 4 3 2 6 6 S 1.75997 * 130.58224 * 180.32164 * 5 4 3 7 7 C 1.75481 * 91.62052 * 180.02562 * 6 5 4 8 8 C 1.47010 * 124.65474 * 179.97438 * 7 6 5 9 9 O 1.21656 * 119.99915 * 179.69608 * 8 7 6 10 10 N 1.34770 * 120.00338 * 359.69519 * 8 7 6 11 11 C 1.46500 * 120.00423 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47361 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.47294 * 64.99703 * 12 11 10 14 14 C 1.53006 * 109.47104 * 185.00342 * 12 11 10 15 15 O 1.42900 * 109.47466 * 54.99437 * 14 12 11 16 16 N 1.46505 * 109.47024 * 304.99744 * 12 11 10 17 17 C 1.36931 * 119.99788 * 155.00126 * 16 12 11 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 12 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 12 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48508 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99997 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00044 * 21 19 17 25 25 C 1.33679 * 110.68621 * 359.67740 * 7 6 5 26 26 C 1.40049 * 119.86610 * 359.97438 * 5 4 3 27 27 C 1.35914 * 119.65219 * 180.02562 * 2 1 3 28 28 H 1.08992 * 109.47285 * 269.97654 * 1 2 3 29 29 H 1.09002 * 109.47211 * 29.97533 * 1 2 3 30 30 H 1.08998 * 109.47526 * 149.96856 * 1 2 3 31 31 H 1.08000 * 119.90941 * 0.04661 * 3 2 1 32 32 H 1.08001 * 119.90527 * 180.02562 * 4 3 2 33 33 H 0.96998 * 119.99979 * 359.97438 * 10 8 7 34 34 H 1.09005 * 109.46957 * 59.99705 * 11 10 8 35 35 H 1.09002 * 109.46680 * 300.00186 * 11 10 8 36 36 H 1.08997 * 109.47191 * 175.00471 * 14 12 11 37 37 H 1.09004 * 109.46584 * 294.99655 * 14 12 11 38 38 H 0.96700 * 113.99900 * 180.02562 * 15 14 12 39 39 H 0.97000 * 119.99792 * 334.99921 * 16 12 11 40 40 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 41 41 H 1.07997 * 122.21764 * 180.21819 * 25 7 6 42 42 H 1.08007 * 119.75365 * 359.95172 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1945 1.2077 0.0000 4 6 3.5684 1.2204 -0.0005 5 6 4.2829 0.0178 -0.0016 6 16 6.0168 -0.2839 0.0050 7 6 5.7650 -2.0205 -0.0030 8 6 6.8419 -3.0213 -0.0027 9 8 6.5702 -4.2072 -0.0030 10 7 8.1301 -2.6252 -0.0021 11 6 9.2032 -3.6225 -0.0023 12 6 10.5587 -2.9132 -0.0008 13 1 10.6787 -2.3607 0.9310 14 6 11.6770 -3.9498 -0.1269 15 8 11.4547 -4.7516 -1.2887 16 7 10.6248 -1.9838 -1.1315 17 6 11.4580 -0.8985 -1.0778 18 1 12.0669 -0.7278 -0.2022 19 6 11.5249 -0.0211 -2.1515 20 7 10.7833 -0.2294 -3.2187 21 14 12.6673 1.4552 -2.0815 22 1 13.3861 1.4636 -0.7820 23 1 13.6507 1.3731 -3.1911 24 1 11.8728 2.7026 -2.2153 25 6 4.4596 -2.3085 -0.0030 26 6 3.5949 -1.2021 -0.0016 27 6 2.1794 -1.1812 -0.0005 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5143 31 1 1.6474 2.1389 0.0008 32 1 4.0982 2.1616 -0.0001 33 1 8.3467 -1.6798 -0.0022 34 1 9.1198 -4.2458 -0.8927 35 1 9.1192 -4.2468 0.8873 36 1 12.6365 -3.4403 -0.2151 37 1 11.6837 -4.5864 0.7580 38 1 12.1267 -5.4321 -1.4315 39 1 10.0783 -2.1374 -1.9180 40 1 10.8298 0.3839 -3.9688 41 1 4.0942 -3.3247 -0.0040 42 1 1.6297 -2.1109 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725547022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:16 Heat of formation + Delta-G solvation = -34.065658 kcal Electronic energy + Delta-G solvation = -25313.395883 eV Core-core repulsion = 21577.810638 eV Total energy + Delta-G solvation = -3735.585244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.05294 -39.28673 -37.17491 -35.69371 -34.88900 -33.52761 -32.42178 -31.44537 -30.05506 -28.38379 -27.21702 -25.78929 -23.98946 -23.47714 -22.66442 -20.90370 -20.19996 -19.50388 -18.36990 -17.53762 -16.78842 -16.59958 -16.08377 -15.53841 -15.20765 -15.04295 -14.72051 -14.53301 -14.21412 -14.06155 -13.73750 -13.61194 -13.41727 -13.17633 -13.01668 -12.82147 -12.77762 -12.46389 -12.02638 -11.86112 -11.45424 -11.33954 -11.01026 -10.89481 -10.86498 -10.71490 -10.57372 -10.08798 -9.89497 -9.77891 -9.75672 -9.38119 -9.00147 -8.77351 -8.48693 -7.77170 -7.05338 -5.81989 -3.12881 0.27627 1.06478 1.41029 1.87605 1.93246 3.27817 3.37968 3.41715 3.44146 3.46616 3.57386 4.45467 4.51730 4.59148 4.72155 4.91215 4.97166 5.03980 5.08684 5.32567 5.34469 5.38166 5.42782 5.48676 5.54438 5.61352 5.73756 5.79787 5.83286 5.88381 5.99884 6.02271 6.10876 6.23255 6.32067 6.36379 6.48467 6.67677 6.70533 6.79621 7.62153 7.80152 8.19402 8.34242 8.41041 9.46822 10.01242 10.37868 11.39392 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.003160 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.571520 B = 8859.063890 C =10697.892367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.097 4.097 4 C -0.081 4.081 5 C -0.140 4.140 6 S 0.151 5.849 7 C -0.212 4.212 8 C 0.582 3.418 9 O -0.539 6.539 10 N -0.704 5.704 11 C 0.118 3.882 12 C 0.164 3.836 13 H 0.067 0.933 14 C 0.060 3.940 15 O -0.560 6.560 16 N -0.714 5.714 17 C -0.249 4.249 18 H 0.071 0.929 19 C -0.007 4.007 20 N -0.923 5.923 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.291 1.291 25 C -0.055 4.055 26 C -0.079 4.079 27 C -0.072 4.072 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.408 0.592 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.027 0.973 38 H 0.364 0.636 39 H 0.389 0.611 40 H 0.256 0.744 41 H 0.153 0.847 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.185 -0.472 9.024 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.118 4.118 4 C -0.103 4.103 5 C -0.257 4.257 6 S 0.419 5.581 7 C -0.331 4.331 8 C 0.367 3.633 9 O -0.418 6.418 10 N -0.355 5.355 11 C -0.006 4.006 12 C 0.053 3.947 13 H 0.084 0.916 14 C -0.021 4.021 15 O -0.363 6.363 16 N -0.355 5.355 17 C -0.380 4.380 18 H 0.089 0.911 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.218 1.218 25 C -0.087 4.087 26 C -0.088 4.088 27 C -0.092 4.092 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.245 0.755 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.045 0.955 38 H 0.209 0.791 39 H 0.223 0.777 40 H 0.066 0.934 41 H 0.171 0.829 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.334 0.104 9.014 17.788 hybrid contribution 0.127 0.036 -0.331 0.356 sum -15.207 0.140 8.684 17.512 Atomic orbital electron populations 1.20790 0.90783 1.02934 1.02394 1.19413 0.96324 0.92899 1.00910 1.20969 0.93340 0.97770 0.99734 1.20491 0.93830 0.95642 1.00356 1.23114 0.97820 0.97400 1.07374 1.84659 1.00225 0.98032 1.75166 1.23842 0.97895 0.97849 1.13539 1.17045 0.82042 0.87121 0.77107 1.90786 1.83412 1.16490 1.51146 1.45890 1.04825 1.11685 1.73072 1.21635 0.85936 0.90622 1.02379 1.20608 0.90469 0.90036 0.93564 0.91570 1.23020 1.00514 0.92627 0.85973 1.86570 1.52629 1.50067 1.47073 1.42392 1.50745 1.25925 1.16484 1.19245 1.17286 1.00587 1.00892 0.91119 1.24753 0.99922 0.99338 0.96363 1.69689 1.42530 1.38475 1.06329 0.86169 0.80236 0.82813 0.77203 1.20582 1.21893 1.21798 1.20162 0.90743 1.00065 0.97753 1.18192 0.94353 0.91392 1.04859 1.20648 0.91322 0.98185 0.99032 0.91137 0.91426 0.91443 0.85221 0.85231 0.75478 0.90186 0.91717 0.93218 0.95469 0.79118 0.77652 0.93446 0.82935 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 9.99 36.00 0.36 -0.34 16 2 C -0.09 -0.87 5.83 -105.19 -0.61 -1.48 16 3 C -0.10 -0.90 9.67 -39.62 -0.38 -1.29 16 4 C -0.08 -0.90 10.07 -39.27 -0.40 -1.30 16 5 C -0.14 -1.89 6.50 -38.29 -0.25 -2.14 16 6 S 0.15 2.25 22.26 -107.50 -2.39 -0.14 16 7 C -0.21 -3.44 6.32 -37.63 -0.24 -3.67 16 8 C 0.58 10.73 7.79 -12.71 -0.10 10.63 16 9 O -0.54 -11.08 16.72 5.23 0.09 -10.99 16 10 N -0.70 -12.86 5.38 -61.52 -0.33 -13.19 16 11 C 0.12 2.15 5.12 -4.04 -0.02 2.13 16 12 C 0.16 3.14 2.84 -67.93 -0.19 2.95 16 13 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 14 C 0.06 1.04 6.86 37.16 0.25 1.29 16 15 O -0.56 -9.98 12.64 -35.23 -0.45 -10.43 16 16 N -0.71 -17.07 4.51 -53.42 -0.24 -17.31 16 17 C -0.25 -6.53 9.93 -15.06 -0.15 -6.68 16 18 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 20 N -0.92 -27.17 13.06 55.49 0.72 -26.45 16 21 Si 0.90 21.66 29.55 -169.99 -5.02 16.64 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C -0.05 -0.79 9.79 -40.36 -0.40 -1.18 16 26 C -0.08 -1.05 5.87 -107.13 -0.63 -1.68 16 27 C -0.07 -0.76 9.64 -39.14 -0.38 -1.14 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 30 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.41 7.58 7.18 -40.82 -0.29 7.29 16 34 H 0.08 1.62 7.40 -51.93 -0.38 1.24 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.36 4.66 9.12 45.56 0.42 5.07 16 39 H 0.39 10.38 7.80 -40.82 -0.32 10.06 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.15 2.04 7.96 -52.49 -0.42 1.62 16 42 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -32.59 373.71 -9.97 -42.56 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -4.76 Total: 17.86 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -3.22 Total: -4.18 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.15 Total: -56.95 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.36 Total: -21.42 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.39 Total: -0.14 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.59 -9.97 -42.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725547022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.499 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds