Wall clock time and date at job start Tue Mar 31 2020 17:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38971 * 119.65333 * 2 1 4 4 C 1.37398 * 120.18455 * 180.02562 * 3 2 1 5 5 C 1.39888 * 120.18157 * 0.02562 * 4 3 2 6 6 S 1.75997 * 130.58224 * 180.32164 * 5 4 3 7 7 C 1.75481 * 91.62052 * 180.02562 * 6 5 4 8 8 C 1.47010 * 124.65474 * 179.97438 * 7 6 5 9 9 O 1.21656 * 119.99915 * 179.69608 * 8 7 6 10 10 N 1.34770 * 120.00338 * 359.69519 * 8 7 6 11 11 C 1.46500 * 120.00423 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47361 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.47294 * 64.99703 * 12 11 10 14 14 C 1.53006 * 109.47104 * 185.00342 * 12 11 10 15 15 O 1.42900 * 109.47466 * 54.99437 * 14 12 11 16 16 N 1.46505 * 109.47024 * 304.99744 * 12 11 10 17 17 C 1.36931 * 119.99788 * 155.00126 * 16 12 11 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 12 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 12 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48508 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99997 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00044 * 21 19 17 25 25 C 1.33679 * 110.68621 * 359.67740 * 7 6 5 26 26 C 1.40049 * 119.86610 * 359.97438 * 5 4 3 27 27 C 1.35914 * 119.65219 * 180.02562 * 2 1 3 28 28 H 1.08992 * 109.47285 * 269.97654 * 1 2 3 29 29 H 1.09002 * 109.47211 * 29.97533 * 1 2 3 30 30 H 1.08998 * 109.47526 * 149.96856 * 1 2 3 31 31 H 1.08000 * 119.90941 * 0.04661 * 3 2 1 32 32 H 1.08001 * 119.90527 * 180.02562 * 4 3 2 33 33 H 0.96998 * 119.99979 * 359.97438 * 10 8 7 34 34 H 1.09005 * 109.46957 * 59.99705 * 11 10 8 35 35 H 1.09002 * 109.46680 * 300.00186 * 11 10 8 36 36 H 1.08997 * 109.47191 * 175.00471 * 14 12 11 37 37 H 1.09004 * 109.46584 * 294.99655 * 14 12 11 38 38 H 0.96700 * 113.99900 * 180.02562 * 15 14 12 39 39 H 0.97000 * 119.99792 * 334.99921 * 16 12 11 40 40 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 41 41 H 1.07997 * 122.21764 * 180.21819 * 25 7 6 42 42 H 1.08007 * 119.75365 * 359.95172 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1945 1.2077 0.0000 4 6 3.5684 1.2204 -0.0005 5 6 4.2829 0.0178 -0.0016 6 16 6.0168 -0.2839 0.0050 7 6 5.7650 -2.0205 -0.0030 8 6 6.8419 -3.0213 -0.0027 9 8 6.5702 -4.2072 -0.0030 10 7 8.1301 -2.6252 -0.0021 11 6 9.2032 -3.6225 -0.0023 12 6 10.5587 -2.9132 -0.0008 13 1 10.6787 -2.3607 0.9310 14 6 11.6770 -3.9498 -0.1269 15 8 11.4547 -4.7516 -1.2887 16 7 10.6248 -1.9838 -1.1315 17 6 11.4580 -0.8985 -1.0778 18 1 12.0669 -0.7278 -0.2022 19 6 11.5249 -0.0211 -2.1515 20 7 10.7833 -0.2294 -3.2187 21 14 12.6673 1.4552 -2.0815 22 1 13.3861 1.4636 -0.7820 23 1 13.6507 1.3731 -3.1911 24 1 11.8728 2.7026 -2.2153 25 6 4.4596 -2.3085 -0.0030 26 6 3.5949 -1.2021 -0.0016 27 6 2.1794 -1.1812 -0.0005 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5143 31 1 1.6474 2.1389 0.0008 32 1 4.0982 2.1616 -0.0001 33 1 8.3467 -1.6798 -0.0022 34 1 9.1198 -4.2458 -0.8927 35 1 9.1192 -4.2468 0.8873 36 1 12.6365 -3.4403 -0.2151 37 1 11.6837 -4.5864 0.7580 38 1 12.1267 -5.4321 -1.4315 39 1 10.0783 -2.1374 -1.9180 40 1 10.8298 0.3839 -3.9688 41 1 4.0942 -3.3247 -0.0040 42 1 1.6297 -2.1109 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725547022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:15 Heat of formation + Delta-G solvation = -57.277922 kcal Electronic energy + Delta-G solvation = -25314.402442 eV Core-core repulsion = 21577.810638 eV Total energy + Delta-G solvation = -3736.591804 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.15503 -40.52753 -38.67163 -36.71494 -36.37107 -35.28046 -33.34893 -33.09446 -31.14539 -30.04725 -27.98773 -27.06967 -25.71917 -24.89211 -23.52409 -22.08256 -21.72641 -20.65835 -19.65257 -19.24358 -18.17696 -17.86343 -17.47857 -16.79364 -16.47762 -16.31077 -16.05838 -15.73291 -15.46564 -15.30763 -15.00845 -14.91765 -14.64794 -14.55456 -14.39172 -13.88118 -13.77559 -13.65391 -13.08346 -13.00224 -12.79321 -12.70300 -12.65755 -12.24958 -12.20045 -11.93864 -11.90390 -11.75227 -11.69081 -11.35252 -10.99114 -10.73105 -10.68219 -10.21896 -9.50639 -9.02457 -8.79810 -7.90389 -5.20340 -0.77916 0.21599 0.32014 0.79611 0.88995 1.49010 1.49498 1.58919 1.94532 2.06356 2.56877 2.66064 3.40630 3.49556 3.59822 3.71505 3.85917 3.89756 3.93204 3.98745 4.23841 4.27295 4.39212 4.52599 4.56032 4.58008 4.65431 4.69023 4.78776 4.86108 4.92463 4.97460 5.03398 5.17624 5.21092 5.25265 5.31674 5.33197 5.54187 5.59155 5.90151 6.27645 6.33632 6.95278 7.06954 7.35752 8.06695 8.32628 9.32441 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.003160 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.571520 B = 8859.063890 C =10697.892367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.090 4.090 3 C -0.081 4.081 4 C -0.098 4.098 5 C -0.146 4.146 6 S 0.117 5.883 7 C -0.245 4.245 8 C 0.582 3.418 9 O -0.568 6.568 10 N -0.705 5.705 11 C 0.128 3.872 12 C 0.159 3.841 13 H 0.080 0.920 14 C 0.066 3.934 15 O -0.584 6.584 16 N -0.724 5.724 17 C -0.237 4.237 18 H 0.082 0.918 19 C -0.071 4.071 20 N -0.965 5.965 21 Si 0.968 3.032 22 H -0.263 1.263 23 H -0.300 1.300 24 H -0.296 1.296 25 C -0.037 4.037 26 C -0.103 4.103 27 C -0.075 4.075 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.165 0.835 32 H 0.143 0.857 33 H 0.407 0.593 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.068 0.932 38 H 0.386 0.614 39 H 0.372 0.628 40 H 0.248 0.752 41 H 0.159 0.841 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.002 0.304 10.503 20.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.102 4.102 4 C -0.120 4.120 5 C -0.263 4.263 6 S 0.385 5.615 7 C -0.364 4.364 8 C 0.369 3.631 9 O -0.450 6.450 10 N -0.355 5.355 11 C 0.004 3.996 12 C 0.050 3.950 13 H 0.097 0.903 14 C -0.014 4.014 15 O -0.391 6.391 16 N -0.364 5.364 17 C -0.368 4.368 18 H 0.100 0.900 19 C -0.264 4.264 20 N -0.615 5.615 21 Si 0.798 3.202 22 H -0.187 1.187 23 H -0.228 1.228 24 H -0.223 1.223 25 C -0.070 4.070 26 C -0.110 4.110 27 C -0.095 4.095 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.182 0.818 32 H 0.161 0.839 33 H 0.243 0.757 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.234 0.766 39 H 0.203 0.797 40 H 0.057 0.943 41 H 0.177 0.823 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.119 0.846 10.554 20.129 hybrid contribution 0.478 -0.226 -0.726 0.898 sum -16.641 0.619 9.829 19.337 Atomic orbital electron populations 1.20869 0.88113 1.04181 1.03579 1.19872 0.98215 0.92261 0.98910 1.21455 0.92607 0.99387 0.96780 1.20808 0.94857 0.95345 1.01030 1.23269 0.96422 0.98623 1.07950 1.84584 1.02742 0.97726 1.76480 1.23591 0.97819 0.97819 1.17124 1.17333 0.82402 0.87225 0.76176 1.90747 1.83848 1.17666 1.52766 1.45901 1.05038 1.11511 1.73043 1.21527 0.85514 0.90434 1.02152 1.20879 0.91699 0.90118 0.92303 0.90255 1.22845 0.98478 0.92700 0.87419 1.86524 1.54034 1.50956 1.47569 1.42497 1.50239 1.26546 1.17090 1.19637 1.16164 1.00448 1.00578 0.89995 1.25502 1.02012 1.02352 0.96487 1.69857 1.44882 1.39646 1.07129 0.85157 0.78177 0.79476 0.77409 1.18737 1.22814 1.22290 1.20393 0.90436 1.00925 0.95266 1.18351 0.95565 0.90690 1.06422 1.20977 0.90154 0.99973 0.98403 0.89823 0.89893 0.90621 0.81770 0.83923 0.75720 0.92517 0.89666 0.94298 0.91411 0.76597 0.79668 0.94292 0.82306 0.83340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.99 71.23 0.71 -0.20 16 2 C -0.09 -1.38 5.83 -20.23 -0.12 -1.49 16 3 C -0.08 -1.24 9.67 22.25 0.22 -1.03 16 4 C -0.10 -2.02 10.07 22.47 0.23 -1.80 16 5 C -0.15 -3.92 6.50 23.11 0.15 -3.76 16 6 S 0.12 3.65 22.26 -56.49 -1.26 2.40 16 7 C -0.25 -8.30 6.32 23.54 0.15 -8.15 16 8 C 0.58 22.38 7.79 86.54 0.67 23.05 16 9 O -0.57 -24.17 16.72 -4.21 -0.07 -24.24 16 10 N -0.71 -26.72 5.38 -466.77 -2.51 -29.23 16 11 C 0.13 4.69 5.12 86.38 0.44 5.14 16 12 C 0.16 6.02 2.84 44.99 0.13 6.15 16 13 H 0.08 2.80 8.08 -2.39 -0.02 2.78 16 14 C 0.07 2.19 6.86 71.98 0.49 2.68 16 15 O -0.58 -20.42 12.64 -148.98 -1.88 -22.30 16 16 N -0.72 -35.15 4.51 -322.93 -1.46 -36.61 16 17 C -0.24 -12.44 9.93 84.04 0.83 -11.60 16 18 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 19 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 20 N -0.96 -58.60 13.06 21.65 0.28 -58.32 16 21 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 23 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 24 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 25 C -0.04 -1.09 9.79 21.77 0.21 -0.87 16 26 C -0.10 -2.66 5.87 -21.49 -0.13 -2.78 16 27 C -0.07 -1.43 9.64 22.55 0.22 -1.21 16 28 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 30 H 0.07 0.54 8.07 -2.39 -0.02 0.53 16 31 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 32 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 33 H 0.41 15.80 7.18 -92.71 -0.67 15.13 16 34 H 0.06 2.36 7.40 -2.38 -0.02 2.35 16 35 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.39 9.41 9.12 -74.06 -0.68 8.73 16 39 H 0.37 20.55 7.80 -92.71 -0.72 19.83 16 40 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 41 H 0.16 4.31 7.96 -2.91 -0.02 4.29 16 42 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -72.41 373.71 -1.17 -73.58 By element: Atomic # 1 Polarization: 47.94 SS G_CDS: -0.98 Total: 46.95 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 4.68 Total: 0.63 kcal Atomic # 7 Polarization: -120.47 SS G_CDS: -3.69 Total: -124.16 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -1.95 Total: -46.54 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.26 Total: 2.40 kcal Total: -72.41 -1.17 -73.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725547022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.306 kcal (2) G-P(sol) polarization free energy of solvation -72.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds