Wall clock time and date at job start Tue Mar 31 2020 18:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.64327 * 2 1 4 4 C 1.54322 * 110.71945 * 236.85800 * 2 1 3 5 5 N 1.47028 * 107.27192 * 263.82988 * 4 2 1 6 6 C 1.34773 * 125.64900 * 181.02239 * 5 4 2 7 7 O 1.21733 * 119.99809 * 180.02562 * 6 5 4 8 8 C 1.46427 * 119.99965 * 0.02562 * 6 5 4 9 9 C 1.35877 * 124.99369 * 180.02562 * 8 6 5 10 10 C 1.38726 * 115.21028 * 180.02562 * 9 8 6 11 11 O 1.36641 * 139.74887 * 179.97438 * 10 9 8 12 12 C 1.34068 * 109.74195 * 179.73547 * 11 10 9 13 13 C 1.34223 * 109.48925 * 0.44766 * 12 11 10 14 14 C 1.38034 * 113.37976 * 0.02562 * 10 9 8 15 15 S 1.75641 * 124.99828 * 0.02562 * 8 6 5 16 16 C 1.47428 * 108.69929 * 1.28328 * 5 4 2 17 17 C 1.55126 * 104.72279 * 335.55579 * 16 5 4 18 18 H 1.09002 * 111.22437 * 279.17420 * 17 16 5 19 19 C 1.53008 * 110.90336 * 155.27498 * 17 16 5 20 20 N 1.46495 * 109.47123 * 72.97419 * 19 17 16 21 21 C 1.36942 * 120.00137 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99482 * 0.02562 * 21 20 19 23 23 C 1.38804 * 120.00205 * 179.97438 * 21 20 19 24 24 N 1.31619 * 120.00315 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00023 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47284 * 60.00210 * 25 23 21 27 27 H 1.48498 * 109.47426 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47178 * 300.00121 * 25 23 21 29 29 H 1.08997 * 109.47589 * 181.69262 * 1 2 3 30 30 H 1.09001 * 109.46980 * 301.69025 * 1 2 3 31 31 H 1.09003 * 109.47657 * 61.68795 * 1 2 3 32 32 H 1.09003 * 109.88554 * 144.41256 * 4 2 1 33 33 H 1.09001 * 110.01011 * 23.31731 * 4 2 1 34 34 H 1.07996 * 122.39622 * 359.97438 * 9 8 6 35 35 H 1.08004 * 125.26126 * 180.30103 * 12 11 10 36 36 H 1.08002 * 126.51608 * 179.83544 * 13 12 11 37 37 H 1.09003 * 110.36325 * 94.48549 * 16 5 4 38 38 H 1.08999 * 110.36373 * 216.80722 * 16 5 4 39 39 H 1.08999 * 109.46637 * 192.97400 * 19 17 16 40 40 H 1.08996 * 109.46885 * 312.97192 * 19 17 16 41 41 H 0.97000 * 120.00260 * 0.02562 * 20 19 17 42 42 H 0.96996 * 120.00427 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0759 -0.7891 -1.2086 5 7 2.3715 -2.1519 -0.7426 6 6 2.8848 -3.1453 -1.4951 7 8 3.0890 -4.2393 -1.0017 8 6 3.1969 -2.9086 -2.9060 9 6 3.7151 -3.8340 -3.7553 10 6 3.9324 -3.3903 -5.0516 11 8 4.4032 -3.8541 -6.2475 12 6 4.3462 -2.8788 -7.1656 13 6 3.8538 -1.7635 -6.6042 14 6 3.5781 -2.0703 -5.2453 15 16 2.9564 -1.3869 -3.7494 16 6 2.0074 -2.2536 0.6824 17 6 2.0789 -0.7975 1.2124 18 1 3.1059 -0.5093 1.4370 19 6 1.1815 -0.6182 2.4386 20 7 1.7913 -1.2847 3.5918 21 6 1.1643 -1.2576 4.8089 22 1 0.2199 -0.7452 4.9185 23 6 1.7418 -1.8896 5.9014 24 7 2.8925 -2.5146 5.7678 25 14 0.8861 -1.8533 7.5614 26 1 -0.4501 -2.4903 7.4436 27 1 1.7026 -2.5949 8.5557 28 1 0.7258 -0.4451 8.0050 29 1 -0.3634 -1.0272 0.0304 30 1 -0.3633 0.5399 0.8745 31 1 -0.3634 0.4874 -0.9047 32 1 2.9867 -0.3180 -1.5782 33 1 1.3281 -0.8223 -2.0010 34 1 3.9424 -4.8427 -3.4433 35 1 4.6517 -2.9749 -8.1971 36 1 3.6939 -0.8142 -7.0938 37 1 0.9973 -2.6493 0.7885 38 1 2.7207 -2.8851 1.2119 39 1 1.0663 0.4445 2.6521 40 1 0.2036 -1.0570 2.2404 41 1 2.6397 -1.7446 3.4934 42 1 3.2963 -2.9559 6.5313 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754823569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:47 Heat of formation + Delta-G solvation = 27.139030 kcal Electronic energy + Delta-G solvation = -25696.785549 eV Core-core repulsion = 21963.854339 eV Total energy + Delta-G solvation = -3732.931210 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.80473 -40.30226 -38.23248 -36.08904 -34.73732 -33.01558 -32.78723 -31.21008 -29.71913 -28.51869 -26.82285 -25.82729 -24.28563 -23.24640 -22.57450 -21.78651 -20.85714 -19.43598 -19.14168 -18.68183 -17.36112 -16.87757 -16.57135 -16.20236 -15.73483 -15.67835 -15.13823 -14.88040 -14.62248 -14.00203 -13.77737 -13.64462 -13.34372 -13.14244 -12.99612 -12.79411 -12.54528 -12.47300 -12.26647 -12.24628 -11.91569 -11.69578 -11.26271 -10.97488 -10.82440 -10.57275 -10.55625 -10.45553 -10.38335 -10.12886 -10.00771 -9.67559 -8.86595 -8.79284 -8.75049 -8.29045 -6.92267 -5.74860 -3.04476 0.02554 0.94891 1.52580 1.77920 2.03195 2.24749 2.92682 3.04086 3.45315 3.49576 3.50978 4.19417 4.25311 4.41710 4.49241 4.59381 4.77994 4.78906 4.79464 5.16338 5.19223 5.27931 5.29930 5.36334 5.47366 5.50497 5.59099 5.61296 5.75186 5.78763 5.84363 5.92685 6.00368 6.11031 6.15219 6.26409 6.33885 6.41957 6.51808 6.67056 6.80453 7.39074 7.69994 8.00841 8.43316 9.54430 10.11290 10.45286 11.47697 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.027780 B = 0.002392 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.688782 B =11704.461317 C =12467.751221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.093 0.907 4 C 0.088 3.912 5 N -0.609 5.609 6 C 0.601 3.399 7 O -0.521 6.521 8 C -0.222 4.222 9 C -0.026 4.026 10 C 0.001 3.999 11 O -0.165 6.165 12 C 0.013 3.987 13 C -0.179 4.179 14 C -0.239 4.239 15 S 0.216 5.784 16 C 0.119 3.881 17 C -0.102 4.102 18 H 0.088 0.912 19 C 0.166 3.834 20 N -0.733 5.733 21 C -0.242 4.242 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.161 0.839 35 H 0.214 0.786 36 H 0.158 0.842 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.025 0.975 40 H 0.026 0.974 41 H 0.384 0.616 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 5.403 -28.237 28.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.111 0.889 4 C -0.037 4.037 5 N -0.343 5.343 6 C 0.389 3.611 7 O -0.399 6.399 8 C -0.342 4.342 9 C -0.061 4.061 10 C -0.055 4.055 11 O -0.064 6.064 12 C -0.057 4.057 13 C -0.202 4.202 14 C -0.356 4.356 15 S 0.482 5.518 16 C -0.003 4.003 17 C -0.121 4.121 18 H 0.106 0.894 19 C 0.038 3.962 20 N -0.378 5.378 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.179 0.821 35 H 0.231 0.769 36 H 0.176 0.824 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.042 0.958 40 H 0.044 0.956 41 H 0.218 0.782 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.046 5.909 -27.458 28.087 hybrid contribution 0.464 -1.319 0.180 1.410 sum 0.418 4.590 -27.278 27.664 Atomic orbital electron populations 1.21869 0.93778 1.02603 1.02097 1.22145 0.96807 0.99122 0.92869 0.88875 1.22311 1.00550 0.82846 0.97971 1.48352 1.62350 1.10966 1.12595 1.16315 0.77858 0.83763 0.83206 1.90897 1.53538 1.23080 1.72378 1.23913 1.13296 0.98441 0.98503 1.19020 0.98502 1.01554 0.87003 1.19253 1.06316 0.91879 0.88011 1.84345 1.67394 1.38215 1.16488 1.24140 1.01177 0.85775 0.94569 1.20980 1.07361 1.00792 0.91052 1.24626 1.10419 0.99110 1.01420 1.84224 1.62560 1.09586 0.95401 1.22461 1.01630 0.98156 0.78003 1.22692 1.01414 0.93213 0.94812 0.89368 1.20633 0.94122 0.96049 0.85404 1.42377 1.25653 1.64481 1.05265 1.19146 1.03058 1.28504 0.86593 0.91221 1.24751 0.97302 1.00688 0.98153 1.69646 1.18096 1.39836 1.30415 0.86269 0.78546 0.77394 0.83960 1.21260 1.21710 1.21297 0.92198 0.91145 0.92738 0.90768 0.90614 0.82130 0.76911 0.82416 0.90602 0.89414 0.95766 0.95610 0.78237 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 7.91 37.15 0.29 -1.22 16 2 C -0.09 -0.99 3.47 -88.79 -0.31 -1.30 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.09 0.94 4.74 -3.06 -0.01 0.93 16 5 N -0.61 -8.68 3.33 -172.00 -0.57 -9.25 16 6 C 0.60 9.41 7.81 -12.97 -0.10 9.30 16 7 O -0.52 -10.06 17.03 5.16 0.09 -9.97 16 8 C -0.22 -2.85 6.33 -37.13 -0.23 -3.09 16 9 C -0.03 -0.33 9.88 -40.25 -0.40 -0.73 16 10 C 0.00 0.01 7.79 -39.48 -0.31 -0.29 16 11 O -0.17 -1.69 10.72 -0.72 -0.01 -1.70 16 12 C 0.01 0.09 12.00 29.32 0.35 0.44 16 13 C -0.18 -1.37 10.91 -39.55 -0.43 -1.80 16 14 C -0.24 -2.48 7.35 -38.21 -0.28 -2.76 16 15 S 0.22 2.13 18.52 -107.50 -1.99 0.14 16 16 C 0.12 1.92 6.01 -2.41 -0.01 1.90 16 17 C -0.10 -1.53 2.93 -88.35 -0.26 -1.79 16 18 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 19 C 0.17 3.09 4.54 -4.04 -0.02 3.07 16 20 N -0.73 -18.09 5.55 -59.91 -0.33 -18.43 16 21 C -0.24 -6.68 9.99 -15.06 -0.15 -6.84 16 22 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 25 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H 0.06 0.69 7.32 -51.93 -0.38 0.31 16 30 H 0.07 0.77 7.12 -51.93 -0.37 0.40 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.71 6.80 -51.93 -0.35 0.36 16 33 H 0.08 0.71 6.65 -51.93 -0.35 0.36 16 34 H 0.16 1.91 8.01 -52.49 -0.42 1.49 16 35 H 0.21 0.40 8.06 -52.48 -0.42 -0.03 16 36 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.08 1.26 7.46 -51.93 -0.39 0.87 16 38 H 0.09 1.65 8.03 -51.93 -0.42 1.24 16 39 H 0.02 0.45 8.05 -51.93 -0.42 0.04 16 40 H 0.03 0.48 6.94 -51.93 -0.36 0.12 16 41 H 0.38 10.09 7.67 -40.82 -0.31 9.78 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -34.07 356.96 -9.13 -43.20 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.42 Total: 5.47 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.97 Total: -4.63 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.18 Total: -55.28 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.08 Total: -11.67 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.99 Total: 0.14 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.07 -9.13 -43.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754823569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.340 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds