Wall clock time and date at job start Tue Mar 31 2020 18:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99927 * 2 1 4 4 C 1.52999 * 109.46967 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47133 * 180.02562 * 4 3 2 6 6 C 1.36950 * 125.06846 * 265.02185 * 5 4 3 7 7 C 1.34206 * 109.91944 * 179.97438 * 6 5 4 8 8 C 1.46547 * 107.01318 * 0.02562 * 7 6 5 9 9 C 1.39669 * 133.91705 * 180.02562 * 8 7 6 10 10 C 1.36515 * 119.86258 * 179.97438 * 9 8 7 11 11 C 1.39427 * 120.45651 * 359.97438 * 10 9 8 12 12 N 1.40001 * 119.74148 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99787 * 213.57609 * 12 11 10 14 14 O 1.21289 * 120.00035 * 5.28116 * 13 12 11 15 15 C 1.50699 * 119.99770 * 185.28216 * 13 12 11 16 16 S 1.81004 * 109.47035 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00000 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99935 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99971 * 179.97438 * 17 16 15 20 20 N 1.31636 * 119.99902 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00125 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47181 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47281 * 120.00154 * 21 19 17 24 24 H 1.48499 * 109.47413 * 240.00339 * 21 19 17 25 25 C 1.38356 * 120.51087 * 359.97438 * 11 10 9 26 26 C 1.37708 * 125.07271 * 84.71955 * 5 4 3 27 27 H 1.09002 * 109.47160 * 59.99530 * 1 2 3 28 28 H 1.08997 * 109.47182 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47171 * 299.99955 * 1 2 3 30 30 H 1.09004 * 109.46962 * 60.00404 * 3 2 1 31 31 H 1.08994 * 109.47647 * 300.00401 * 3 2 1 32 32 H 1.08993 * 109.47711 * 60.00211 * 4 3 2 33 33 H 1.09006 * 109.47030 * 300.00278 * 4 3 2 34 34 H 1.08000 * 125.04211 * 359.96575 * 6 5 4 35 35 H 1.07995 * 126.48776 * 180.02562 * 7 6 5 36 36 H 1.08002 * 120.07432 * 359.93641 * 9 8 7 37 37 H 1.07997 * 119.77312 * 180.02562 * 10 9 8 38 38 H 0.97005 * 120.00226 * 33.58173 * 12 11 10 39 39 H 1.09000 * 109.47265 * 299.99738 * 15 13 12 40 40 H 1.09002 * 109.47279 * 60.00303 * 15 13 12 41 41 H 0.96995 * 120.00148 * 180.02562 * 20 19 17 42 42 H 1.07997 * 120.13624 * 180.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1314 2.5230 0.0000 6 6 4.5398 3.2030 -1.1164 7 6 5.0386 4.3988 -0.7665 8 6 4.9426 4.4930 0.6928 9 6 5.2899 5.4732 1.6252 10 6 5.0674 5.2561 2.9545 11 6 4.4946 4.0616 3.3893 12 7 4.2725 3.8550 4.7561 13 6 4.3812 2.6166 5.2767 14 8 4.7641 1.6984 4.5829 15 6 4.0269 2.3727 6.7211 16 16 4.2749 0.6238 7.1161 17 6 3.8008 0.6232 8.8131 18 1 3.4806 1.5406 9.2847 19 6 3.8378 -0.5564 9.5437 20 7 4.2275 -1.6746 8.9688 21 14 3.3359 -0.5569 11.3429 22 1 2.9420 0.8166 11.7473 23 1 2.1871 -1.4779 11.5362 24 1 4.4790 -1.0099 12.1756 25 6 4.1430 3.0795 2.4805 26 6 4.3589 3.2874 1.1226 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 0.8901 31 1 1.6886 1.8465 -0.8899 32 1 3.8568 0.6440 -0.8908 33 1 3.8574 0.6435 0.8891 34 1 4.4710 2.8319 -2.1283 35 1 5.4354 5.1493 -1.4340 36 1 5.7342 6.4007 1.2954 37 1 5.3361 6.0152 3.6742 38 1 4.0404 4.6030 5.3283 39 1 4.6647 2.9838 7.3598 40 1 2.9832 2.6383 6.8890 41 1 4.2531 -2.4990 9.4791 42 1 3.6993 2.1567 2.8240 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180758803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:12 Heat of formation + Delta-G solvation = -36.193084 kcal Electronic energy + Delta-G solvation = -25195.156057 eV Core-core repulsion = 21459.478561 eV Total energy + Delta-G solvation = -3735.677497 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.37653 -41.06724 -39.07555 -38.09726 -35.47570 -34.60177 -33.94980 -31.84754 -31.14278 -29.50247 -28.50907 -27.64540 -27.11705 -24.63023 -23.84194 -22.59616 -21.57923 -21.17334 -19.89454 -18.69907 -18.17001 -17.72750 -17.35588 -17.15148 -16.89923 -16.77554 -16.51440 -16.31316 -16.10172 -15.38741 -15.12499 -14.99220 -14.83299 -14.55330 -14.28538 -14.13643 -13.90028 -13.66279 -13.33554 -13.18250 -12.93046 -12.76386 -12.63561 -12.61041 -12.56659 -12.36377 -12.06028 -11.74064 -11.18614 -11.15563 -10.96351 -10.83996 -10.31158 -10.30106 -8.95898 -8.70059 -8.43563 -8.36583 -6.15143 0.12651 0.57940 1.22290 1.40609 1.43929 1.47251 1.55969 1.63750 1.87211 2.16846 2.24986 2.84945 2.96155 2.97983 3.27245 3.59222 3.71147 3.84374 3.90974 4.00086 4.12283 4.16267 4.24525 4.28818 4.36500 4.39214 4.44063 4.45107 4.55293 4.59575 4.66336 4.73123 4.76001 5.01297 5.06163 5.34454 5.39156 5.40807 5.55474 5.84821 5.89464 5.97915 6.18449 6.24283 6.38369 6.41888 7.04843 7.10245 8.72873 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.002807 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.498403 B = 9973.956474 C =11756.065033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.055 3.945 4 C 0.113 3.887 5 N -0.486 5.486 6 C 0.049 3.951 7 C -0.204 4.204 8 C -0.139 4.139 9 C -0.051 4.051 10 C -0.163 4.163 11 C 0.152 3.848 12 N -0.655 5.655 13 C 0.532 3.468 14 O -0.543 6.543 15 C -0.128 4.128 16 S -0.149 6.149 17 C -0.545 4.545 18 H 0.085 0.915 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.255 1.255 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.159 4.159 26 C 0.090 3.910 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.039 0.961 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.125 0.875 33 H 0.067 0.933 34 H 0.205 0.795 35 H 0.176 0.824 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.429 0.571 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.271 0.729 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.967 16.492 -21.109 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C -0.022 4.022 4 C -0.010 4.010 5 N -0.171 5.171 6 C -0.074 4.074 7 C -0.228 4.228 8 C -0.144 4.144 9 C -0.070 4.070 10 C -0.184 4.184 11 C 0.057 3.943 12 N -0.303 5.303 13 C 0.319 3.681 14 O -0.419 6.419 15 C -0.279 4.279 16 S 0.078 5.922 17 C -0.693 4.693 18 H 0.103 0.897 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.179 1.179 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.182 4.182 26 C -0.017 4.017 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.143 0.857 33 H 0.086 0.914 34 H 0.222 0.778 35 H 0.193 0.807 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.269 0.731 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.080 0.920 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.365 14.287 -22.216 26.627 hybrid contribution -1.062 0.702 2.372 2.692 sum -4.427 14.989 -19.844 25.260 Atomic orbital electron populations 1.22969 0.78793 1.04221 1.00930 1.87794 1.22048 1.27430 1.95620 1.22743 0.93249 0.85149 1.01100 1.21489 0.92112 0.81804 1.05553 1.43967 1.53173 1.14890 1.05092 1.22501 1.00215 0.92896 0.91785 1.22018 1.09676 0.99194 0.91900 1.19670 1.05075 0.94263 0.95434 1.20435 0.97186 0.98525 0.90810 1.20687 1.03328 0.97055 0.97296 1.17513 0.98808 0.95649 0.82330 1.43303 1.69406 1.10029 1.07532 1.20325 0.76172 0.82556 0.89037 1.90716 1.44958 1.43994 1.62243 1.23359 1.06503 1.03091 0.94921 1.85635 1.88174 1.04661 1.13771 1.23235 1.51770 0.98530 0.95717 0.89713 1.26148 0.94477 0.93987 1.04615 1.70192 1.45569 1.00149 1.38907 0.84885 0.77965 0.79042 0.75930 1.17905 1.19988 1.19941 1.19819 1.07416 1.00733 0.90263 1.18171 1.02574 0.93033 0.87904 0.91957 0.88069 0.94183 0.94719 0.90603 0.85678 0.91422 0.77776 0.80705 0.82218 0.82602 0.73102 0.86477 0.86738 0.91994 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.41 -9.79 10.70 -148.98 -1.59 -11.38 16 3 C 0.06 1.19 6.26 71.98 0.45 1.65 16 4 C 0.11 2.53 6.37 86.38 0.55 3.08 16 5 N -0.49 -11.45 2.78 -515.88 -1.44 -12.89 16 6 C 0.05 0.83 11.28 82.97 0.94 1.76 16 7 C -0.20 -3.61 11.08 23.52 0.26 -3.35 16 8 C -0.14 -3.34 6.37 -20.17 -0.13 -3.47 16 9 C -0.05 -1.03 10.04 22.21 0.22 -0.81 16 10 C -0.16 -3.56 9.88 22.15 0.22 -3.35 16 11 C 0.15 4.45 6.27 38.15 0.24 4.69 16 12 N -0.65 -18.46 5.34 -303.41 -1.62 -20.08 16 13 C 0.53 20.41 7.57 87.66 0.66 21.07 16 14 O -0.54 -26.03 13.55 -3.06 -0.04 -26.07 16 15 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 16 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 17 C -0.54 -31.06 9.50 67.95 0.65 -30.41 16 18 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 19 C 0.01 0.71 5.49 84.86 0.47 1.17 16 20 N -0.91 -56.25 13.22 21.65 0.29 -55.96 16 21 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 C -0.16 -5.36 8.58 22.49 0.19 -5.17 16 26 C 0.09 2.60 6.81 39.01 0.27 2.87 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.13 2.06 8.12 -2.39 -0.02 2.04 16 33 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.21 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 36 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 38 H 0.43 8.28 8.82 -92.70 -0.82 7.46 16 39 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 40 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 41 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 42 H 0.10 3.95 6.41 -2.91 -0.02 3.93 16 Total: -1.00 -82.65 376.55 3.36 -79.30 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.22 Total: 24.09 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 6.67 Total: -13.17 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -2.77 Total: -88.93 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -1.64 Total: -37.45 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -82.65 3.36 -79.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180758803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.102 kcal (2) G-P(sol) polarization free energy of solvation -82.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds