Wall clock time and date at job start Tue Mar 31 2020 18:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99826 * 2 1 4 4 O 1.20826 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99715 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.47533 * 59.99910 * 5 3 2 7 7 C 1.53000 * 109.47220 * 299.99522 * 5 3 2 8 8 C 1.50697 * 109.47085 * 175.00451 * 7 5 3 9 9 C 1.34208 * 126.49470 * 265.02038 * 8 7 5 10 10 N 1.36910 * 109.92105 * 180.02562 * 9 8 7 11 11 H 0.96999 * 125.06524 * 180.02562 * 10 9 8 12 12 C 1.37686 * 109.86568 * 359.97438 * 10 9 8 13 13 C 1.39121 * 133.47108 * 179.97438 * 12 10 9 14 14 C 1.37948 * 119.75877 * 180.02562 * 13 12 10 15 15 F 1.35102 * 119.69609 * 179.97438 * 14 13 12 16 16 C 1.39033 * 120.61036 * 0.02562 * 14 13 12 17 17 C 1.36607 * 120.50410 * 0.02562 * 16 14 13 18 18 C 1.39642 * 119.79544 * 359.69847 * 17 16 14 19 19 N 1.46504 * 109.46911 * 179.97438 * 5 3 2 20 20 C 1.34774 * 119.99915 * 274.99884 * 19 5 3 21 21 O 1.21686 * 120.00451 * 359.97438 * 20 19 5 22 22 C 1.46376 * 120.00075 * 180.02562 * 20 19 5 23 23 H 1.08001 * 119.99956 * 359.97438 * 22 20 19 24 24 C 1.40052 * 120.00108 * 179.97438 * 22 20 19 25 25 N 1.30668 * 120.00069 * 0.02562 * 24 22 20 26 26 Si 1.86801 * 119.99847 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47226 * 60.00273 * 26 24 22 28 28 H 1.48501 * 109.46859 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47235 * 299.99884 * 26 24 22 30 30 H 1.09001 * 109.47157 * 60.00159 * 1 2 3 31 31 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47070 * 300.00317 * 1 2 3 33 33 H 1.09005 * 109.46886 * 294.99894 * 7 5 3 34 34 H 1.08994 * 109.46869 * 54.99860 * 7 5 3 35 35 H 1.08002 * 125.04319 * 359.97438 * 9 8 7 36 36 H 1.08001 * 120.12156 * 0.02562 * 13 12 10 37 37 H 1.07998 * 119.74948 * 180.02562 * 16 14 13 38 38 H 1.07999 * 120.10028 * 179.97438 * 17 16 14 39 39 H 0.97000 * 120.00151 * 95.00166 * 19 5 3 40 40 H 0.96994 * 119.99981 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9558 0.7809 -0.8908 7 6 4.1139 0.5811 1.2483 8 6 5.6193 0.5518 1.1874 9 6 6.3802 -0.4543 0.7291 10 7 7.7043 -0.1215 0.8308 11 1 8.4438 -0.6889 0.5621 12 6 7.8298 1.1391 1.3702 13 6 8.9221 1.9422 1.6824 14 6 8.7188 3.1926 2.2283 15 9 9.7804 3.9713 2.5315 16 6 7.4314 3.6587 2.4703 17 6 6.3462 2.8846 2.1716 18 6 6.5299 1.6180 1.6130 19 7 3.9817 2.6797 -0.0011 20 6 4.0748 3.3545 -1.1640 21 8 3.8143 2.7967 -2.2137 22 6 4.4903 4.7580 -1.1646 23 1 4.7219 5.2530 -0.2331 24 6 4.5876 5.4591 -2.3732 25 7 4.3069 4.8604 -3.5002 26 14 5.1172 7.2504 -2.3738 27 1 6.4743 7.3656 -1.7821 28 1 5.1400 7.7593 -3.7687 29 1 4.1576 8.0506 -1.5711 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.7968 1.1281 2.1363 34 1 3.7321 -0.4388 1.2943 35 1 6.0039 -1.3883 0.3388 36 1 9.9256 1.5879 1.4981 37 1 7.2883 4.6401 2.8978 38 1 5.3491 3.2530 2.3627 39 1 4.1897 3.1243 0.8356 40 1 4.3746 5.3458 -4.3372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356949607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:17 Heat of formation + Delta-G solvation = -108.384794 kcal Electronic energy + Delta-G solvation = -28908.098502 eV Core-core repulsion = 24603.077362 eV Total energy + Delta-G solvation = -4305.021140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.71685 -41.22519 -39.96467 -37.42792 -36.56983 -35.78067 -34.64652 -32.47963 -31.71138 -30.31135 -29.21253 -28.27287 -27.10932 -25.97258 -23.98141 -23.03645 -21.78557 -20.82150 -19.66115 -19.15254 -18.19202 -17.32189 -17.04288 -16.98669 -16.24020 -16.03860 -15.79730 -15.45726 -15.27394 -15.10214 -14.57016 -14.17082 -14.01457 -13.88164 -13.54880 -13.47246 -12.98435 -12.86061 -12.62102 -12.28936 -12.25139 -12.01689 -11.70579 -11.49897 -11.22773 -11.11639 -11.00278 -10.90094 -10.86579 -10.40132 -10.38286 -10.22071 -9.91161 -9.42476 -8.79885 -8.08378 -7.72647 -7.62712 -7.49166 -6.14486 -4.58268 1.10717 1.61587 2.61844 2.87385 3.08694 3.15638 3.22057 3.24918 3.27497 3.89315 4.14640 4.49242 4.62952 4.67262 4.78460 4.88131 5.05105 5.15460 5.26547 5.32715 5.34566 5.41644 5.43313 5.50894 5.59567 5.72986 5.81451 5.85201 5.98309 6.01679 6.16877 6.26942 6.32959 6.55343 6.75079 6.81304 6.85070 7.19292 7.48273 7.54376 7.84663 8.00433 8.32271 8.40559 9.07458 9.49748 10.63006 10.81156 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.007308 B = 0.006009 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3830.745537 B = 4658.338391 C = 7592.860431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.369 6.369 3 C 0.441 3.559 4 O -0.488 6.488 5 C 0.175 3.825 6 H 0.115 0.885 7 C -0.046 4.046 8 C -0.149 4.149 9 C 0.054 3.946 10 N -0.593 5.593 11 H 0.415 0.585 12 C 0.120 3.880 13 C -0.171 4.171 14 C 0.117 3.883 15 F -0.143 7.143 16 C -0.175 4.175 17 C -0.028 4.028 18 C -0.096 4.096 19 N -0.734 5.734 20 C 0.563 3.437 21 O -0.579 6.579 22 C -0.536 4.536 23 H 0.067 0.933 24 C 0.089 3.911 25 N -0.768 5.768 26 Si 0.905 3.095 27 H -0.267 1.267 28 H -0.281 1.281 29 H -0.267 1.267 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.173 0.827 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.383 0.617 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.337 -11.717 12.318 17.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.286 6.286 3 C 0.280 3.720 4 O -0.373 6.373 5 C 0.065 3.935 6 H 0.132 0.868 7 C -0.084 4.084 8 C -0.156 4.156 9 C -0.071 4.071 10 N -0.195 5.195 11 H 0.252 0.748 12 C 0.012 3.988 13 C -0.193 4.193 14 C 0.097 3.903 15 F -0.121 7.121 16 C -0.195 4.195 17 C -0.047 4.047 18 C -0.101 4.101 19 N -0.390 5.390 20 C 0.368 3.632 21 O -0.462 6.462 22 C -0.573 4.573 23 H 0.085 0.915 24 C -0.131 4.131 25 N -0.396 5.396 26 Si 0.730 3.270 27 H -0.192 1.192 28 H -0.206 1.206 29 H -0.192 1.192 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.190 0.810 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.217 0.783 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.007 -11.863 11.278 16.851 hybrid contribution 0.600 1.120 0.060 1.272 sum 4.608 -10.743 11.338 16.284 Atomic orbital electron populations 1.23126 0.77789 1.02747 1.02233 1.86516 1.22448 1.34732 1.84899 1.25267 0.93387 0.81075 0.72282 1.90651 1.66662 1.36376 1.43571 1.20134 0.84471 0.88394 1.00538 0.86784 1.20132 0.89998 1.01565 0.96719 1.19932 0.93977 0.93722 1.07988 1.21604 0.81850 1.00425 1.03209 1.41623 1.07605 1.14308 1.56012 0.74798 1.17716 0.94614 0.86555 0.99918 1.19669 0.97655 0.94069 1.07868 1.17135 0.83538 0.88966 1.00659 1.91471 1.55463 1.74111 1.91093 1.20574 0.90585 1.01746 1.06564 1.20090 0.98593 0.91403 0.94569 1.19011 0.91763 0.95230 1.04117 1.46101 1.73498 1.08588 1.10777 1.18183 0.76981 0.87094 0.80976 1.90592 1.54690 1.69970 1.30917 1.20755 1.48450 0.94423 0.93656 0.91458 1.25675 0.93115 0.99255 0.95047 1.70005 1.35067 1.36423 0.98137 0.86474 0.79840 0.82969 0.77759 1.19175 1.20615 1.19228 0.92245 0.88786 0.92467 0.90504 0.89033 0.81012 0.85399 0.84745 0.85138 0.78338 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.52 16 2 O -0.37 -5.93 10.37 -39.25 -0.41 -6.34 16 3 C 0.44 8.65 7.29 36.01 0.26 8.91 16 4 O -0.49 -11.49 16.07 -18.75 -0.30 -11.79 16 5 C 0.17 3.26 2.47 -69.08 -0.17 3.09 16 6 H 0.11 2.33 7.57 -51.93 -0.39 1.93 16 7 C -0.05 -0.61 5.25 -27.88 -0.15 -0.75 16 8 C -0.15 -2.04 5.32 -102.70 -0.55 -2.58 16 9 C 0.05 0.61 11.74 -16.70 -0.20 0.42 16 10 N -0.59 -6.51 6.07 -10.64 -0.06 -6.57 16 11 H 0.42 3.15 8.96 -40.82 -0.37 2.78 16 12 C 0.12 1.66 7.27 -84.00 -0.61 1.05 16 13 C -0.17 -2.30 10.05 -39.36 -0.40 -2.69 16 14 C 0.12 1.70 7.28 -39.39 -0.29 1.41 16 15 F -0.14 -2.07 17.25 2.25 0.04 -2.03 16 16 C -0.17 -2.49 9.95 -39.88 -0.40 -2.89 16 17 C -0.03 -0.41 9.25 -39.65 -0.37 -0.78 16 18 C -0.10 -1.44 6.18 -105.12 -0.65 -2.09 16 19 N -0.73 -16.27 4.17 -56.34 -0.23 -16.50 16 20 C 0.56 16.04 7.58 -12.99 -0.10 15.94 16 21 O -0.58 -18.77 14.68 5.20 0.08 -18.69 16 22 C -0.54 -15.37 9.54 -35.63 -0.34 -15.71 16 23 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 24 C 0.09 2.53 5.50 -17.37 -0.10 2.44 16 25 N -0.77 -23.45 11.83 55.55 0.66 -22.80 16 26 Si 0.90 20.75 29.56 -169.99 -5.02 15.73 16 27 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 30 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.97 7.99 -51.93 -0.42 0.56 16 35 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.13 1.75 6.67 -52.49 -0.35 1.40 16 39 H 0.38 7.61 6.22 -40.82 -0.25 7.35 16 40 H 0.27 7.47 8.29 -40.82 -0.34 7.13 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -38.89 356.85 -7.14 -46.02 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -4.28 Total: 10.31 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -2.97 Total: 7.29 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.36 Total: -45.87 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.63 Total: -36.82 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -38.89 -7.14 -46.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356949607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.362 kcal (2) G-P(sol) polarization free energy of solvation -38.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds