Wall clock time and date at job start Tue Mar 31 2020 17:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.38502 * 125.83204 * 2 1 4 4 C 1.40119 * 125.92946 * 359.97438 * 3 2 1 5 5 H 1.08001 * 119.99902 * 359.97438 * 4 3 2 6 6 C 1.40038 * 120.00280 * 179.97438 * 4 3 2 7 7 N 1.30799 * 119.99726 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00187 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47130 * 90.00212 * 8 6 4 10 10 H 1.48501 * 109.47173 * 210.00432 * 8 6 4 11 11 H 1.48505 * 109.46803 * 330.00349 * 8 6 4 12 12 N 1.32243 * 108.14793 * 179.97438 * 3 2 1 13 13 N 1.40167 * 107.75589 * 359.97438 * 12 3 2 14 14 C 1.46503 * 126.14516 * 179.97438 * 13 12 3 15 15 N 1.46896 * 109.46934 * 90.02492 * 14 13 12 16 16 C 1.48050 * 111.00060 * 304.99760 * 15 14 13 17 17 C 1.51187 * 105.67578 * 268.24148 * 16 15 14 18 18 C 1.38198 * 131.76228 * 162.49459 * 17 16 15 19 19 C 1.38233 * 120.08093 * 179.97438 * 18 17 16 20 20 C 1.38220 * 120.02986 * 0.04206 * 19 18 17 21 21 C 1.38445 * 119.97371 * 359.97438 * 20 19 18 22 22 F 1.35101 * 120.00611 * 180.02562 * 21 20 19 23 23 C 1.38395 * 108.25170 * 342.49329 * 17 16 15 24 24 C 1.48053 * 110.99960 * 190.00285 * 15 14 13 25 25 C 1.34731 * 125.83937 * 180.29992 * 2 1 3 26 26 S 1.71198 * 125.96915 * 0.02562 * 25 2 1 27 27 H 1.09005 * 109.47203 * 90.00696 * 1 2 3 28 28 H 1.08998 * 109.47420 * 210.00240 * 1 2 3 29 29 H 1.09003 * 109.47769 * 330.00950 * 1 2 3 30 30 H 0.97004 * 119.99787 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.46937 * 330.02782 * 14 13 12 32 32 H 1.08997 * 109.47246 * 210.02570 * 14 13 12 33 33 H 1.09001 * 110.21002 * 27.29357 * 16 15 14 34 34 H 1.09003 * 110.20904 * 149.10543 * 16 15 14 35 35 H 1.07998 * 119.95988 * 0.02562 * 18 17 16 36 36 H 1.08001 * 119.98216 * 180.02562 * 19 18 17 37 37 H 1.08001 * 120.00892 * 180.25027 * 20 19 18 38 38 H 1.08998 * 110.21064 * 332.70486 * 24 15 14 39 39 H 1.09011 * 110.27304 * 210.84892 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2758 1.1229 0.0000 4 6 1.8372 2.4537 -0.0005 5 1 0.7799 2.6738 -0.0014 6 6 2.7699 3.4983 0.0001 7 7 4.0504 3.2317 0.0006 8 14 2.1852 5.2724 0.0001 9 1 2.0297 5.7423 1.4002 10 1 3.1821 6.1222 -0.6994 11 1 0.8789 5.3631 -0.7004 12 7 3.5357 0.7212 0.0006 13 7 3.5375 -0.6805 0.0015 14 6 4.7216 -1.5431 0.0019 15 7 5.1173 -1.8310 1.3869 16 6 5.3228 -0.5796 2.1510 17 6 6.7896 -0.2455 2.0009 18 6 7.4929 0.9256 2.2096 19 6 8.8579 0.9619 1.9942 20 6 9.5214 -0.1735 1.5687 21 6 8.8185 -1.3476 1.3587 22 9 9.4665 -2.4580 0.9433 23 6 7.4520 -1.3837 1.5752 24 6 6.4389 -2.4967 1.4337 25 6 2.2538 -1.0922 -0.0057 26 16 1.7194 -2.7186 -0.0149 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3635 0.8901 0.5137 30 1 4.6965 3.9553 0.0007 31 1 5.5393 -1.0379 -0.5121 32 1 4.4913 -2.4766 -0.5117 33 1 4.7100 0.2203 1.7354 34 1 5.0763 -0.7350 3.2013 35 1 6.9757 1.8134 2.5422 36 1 9.4060 1.8779 2.1582 37 1 10.5885 -0.1459 1.4044 38 1 6.6143 -3.0507 0.5116 39 1 6.4939 -3.1672 2.2915 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840159708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:20 Heat of formation + Delta-G solvation = 72.482379 kcal Electronic energy + Delta-G solvation = -26514.388955 eV Core-core repulsion = 22692.256427 eV Total energy + Delta-G solvation = -3822.132529 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.096 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.93788 -42.75214 -41.45933 -38.22060 -36.08205 -35.59878 -32.93160 -32.05221 -31.61824 -29.31487 -28.72738 -28.24628 -26.68219 -24.28488 -23.15052 -22.77237 -22.56359 -22.17604 -19.50387 -18.56630 -18.36229 -17.72920 -17.46199 -17.32561 -16.89755 -16.81721 -16.50489 -16.39420 -16.04760 -15.51685 -15.24670 -14.89342 -14.32344 -14.13963 -13.96938 -13.89217 -13.78438 -13.56879 -13.45133 -13.12343 -13.03025 -12.75793 -12.62464 -12.47451 -12.39551 -12.21862 -12.00266 -11.76208 -11.38523 -10.97239 -10.68609 -10.01366 -9.74340 -9.69584 -8.81798 -8.65397 -8.57532 -6.98054 0.08860 0.11313 0.49269 0.77808 1.27393 1.45962 1.59386 1.60264 1.84508 2.12171 2.38659 2.49690 2.71923 3.08362 3.12564 3.29812 3.45153 3.55343 3.93981 3.96884 4.07065 4.14797 4.22553 4.29861 4.44121 4.46303 4.49563 4.52983 4.70293 4.74789 4.86323 4.87248 4.97099 5.05731 5.08866 5.21968 5.28099 5.28780 5.46567 5.58549 5.83748 5.85561 6.02140 6.46595 6.56376 7.29613 8.23333 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.004959 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.661485 B = 5644.598550 C = 8045.106287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.517 5.517 3 C 0.354 3.646 4 C -0.447 4.447 5 H 0.118 0.882 6 C 0.039 3.961 7 N -0.768 5.768 8 Si 1.002 2.998 9 H -0.261 1.261 10 H -0.273 1.273 11 H -0.250 1.250 12 N -0.368 5.368 13 N -0.380 5.380 14 C 0.319 3.681 15 N -0.512 5.512 16 C 0.063 3.937 17 C -0.093 4.093 18 C -0.112 4.112 19 C -0.079 4.079 20 C -0.151 4.151 21 C 0.106 3.894 22 F -0.143 7.143 23 C -0.179 4.179 24 C 0.093 3.907 25 C 0.469 3.531 26 S -0.735 6.735 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.292 0.708 31 H 0.063 0.937 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.094 0.906 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.134 3.963 3.628 9.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.217 5.217 3 C 0.106 3.894 4 C -0.488 4.488 5 H 0.136 0.864 6 C -0.185 4.185 7 N -0.392 5.392 8 Si 0.822 3.178 9 H -0.186 1.186 10 H -0.197 1.197 11 H -0.173 1.173 12 N -0.201 5.201 13 N -0.165 5.165 14 C 0.108 3.892 15 N -0.234 5.234 16 C -0.065 4.065 17 C -0.094 4.094 18 C -0.130 4.130 19 C -0.097 4.097 20 C -0.170 4.170 21 C 0.087 3.913 22 F -0.122 7.122 23 C -0.182 4.182 24 C -0.034 4.034 25 C 0.099 3.901 26 S -0.611 6.611 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.127 0.873 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.148 0.852 36 H 0.186 0.814 37 H 0.184 0.816 38 H 0.112 0.888 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.650 2.929 3.798 9.891 hybrid contribution -0.020 1.292 -0.510 1.389 sum 8.630 4.221 3.288 10.154 Atomic orbital electron populations 1.22046 0.73012 1.05291 1.04317 1.46250 1.09690 1.04074 1.61713 1.21694 0.84362 0.89360 0.93940 1.18916 0.96881 0.85278 1.47721 0.86416 1.26800 0.94106 1.05890 0.91713 1.69953 1.02903 1.36980 1.29357 0.84857 0.79479 0.73879 0.79606 1.18574 1.19737 1.17283 1.79241 1.14935 0.82687 1.43256 1.49274 1.03796 1.06978 1.56495 1.22056 0.82936 0.92737 0.91477 1.65376 1.27244 1.19586 1.11228 1.21895 0.92362 0.92543 0.99657 1.21002 0.96208 0.94044 0.98163 1.20825 0.94908 0.96768 1.00534 1.21307 0.93041 0.98988 0.96326 1.21413 1.02052 0.91028 1.02488 1.17272 0.88493 0.84087 1.01495 1.91472 1.81406 1.51357 1.87919 1.21197 0.93801 0.98341 1.04843 1.21643 0.82458 0.94500 1.04840 1.22844 0.85316 0.92338 0.89612 1.92698 1.85258 1.00534 1.82604 0.90020 0.89329 0.87341 0.89703 0.91946 0.86746 0.89359 0.88875 0.85232 0.81389 0.81647 0.88766 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.22 10.64 127.77 1.36 4.58 16 2 N -0.52 -22.90 3.17 -548.30 -1.74 -24.63 16 3 C 0.35 16.74 7.50 133.52 1.00 17.74 16 4 C -0.45 -19.41 8.98 23.16 0.21 -19.21 16 5 H 0.12 4.47 7.11 -2.91 -0.02 4.45 16 6 C 0.04 1.61 5.50 85.28 0.47 2.08 16 7 N -0.77 -34.58 11.90 21.84 0.26 -34.32 16 8 Si 1.00 30.86 29.56 68.60 2.03 32.89 16 9 H -0.26 -7.84 7.11 99.48 0.71 -7.13 16 10 H -0.27 -8.31 7.11 99.48 0.71 -7.61 16 11 H -0.25 -7.28 7.11 99.48 0.71 -6.57 16 12 N -0.37 -18.10 8.91 -55.16 -0.49 -18.59 16 13 N -0.38 -17.59 3.14 -359.73 -1.13 -18.72 16 14 C 0.32 12.81 5.79 170.81 0.99 13.80 16 15 N -0.51 -18.73 5.71 -909.49 -5.20 -23.92 16 16 C 0.06 2.34 6.49 85.49 0.56 2.90 16 17 C -0.09 -2.97 6.20 -19.68 -0.12 -3.09 16 18 C -0.11 -3.12 10.04 22.26 0.22 -2.90 16 19 C -0.08 -1.70 10.04 22.26 0.22 -1.47 16 20 C -0.15 -3.27 10.03 22.31 0.22 -3.05 16 21 C 0.11 2.82 7.30 22.36 0.16 2.98 16 22 F -0.14 -3.78 17.27 44.97 0.78 -3.00 16 23 C -0.18 -5.33 6.10 -19.64 -0.12 -5.45 16 24 C 0.09 2.76 6.62 85.48 0.57 3.32 16 25 C 0.47 22.43 7.84 179.06 1.40 23.83 16 26 S -0.73 -36.71 29.49 -56.49 -1.67 -38.38 16 27 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 28 H 0.09 3.05 7.62 -2.39 -0.02 3.03 16 29 H 0.11 3.11 7.32 -2.39 -0.02 3.09 16 30 H 0.29 11.88 8.30 -92.71 -0.77 11.11 16 31 H 0.06 2.50 7.99 -2.39 -0.02 2.48 16 32 H 0.11 4.57 7.63 -2.39 -0.02 4.55 16 33 H 0.09 3.92 5.26 -2.39 -0.01 3.91 16 34 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 35 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 36 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.09 2.56 7.80 -2.39 -0.02 2.54 16 39 H 0.12 3.13 8.14 -2.38 -0.02 3.11 16 Total: -1.00 -62.53 347.19 1.08 -61.44 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 1.10 Total: 31.17 kcal Atomic # 6 Polarization: 28.92 SS G_CDS: 7.14 Total: 36.07 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -8.30 Total: -120.19 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.78 Total: -3.00 kcal Atomic # 14 Polarization: 30.86 SS G_CDS: 2.03 Total: 32.89 kcal Atomic # 16 Polarization: -36.71 SS G_CDS: -1.67 Total: -38.38 kcal Total: -62.53 1.08 -61.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840159708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.925 kcal (2) G-P(sol) polarization free energy of solvation -62.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds