Wall clock time and date at job start Tue Mar 31 2020 18:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86792 * 120.00336 * 2 1 4 4 H 1.48498 * 109.47196 * 264.54316 * 3 2 1 5 5 H 1.48510 * 109.47106 * 24.53857 * 3 2 1 6 6 H 1.48492 * 109.47267 * 144.53861 * 3 2 1 7 7 C 1.38813 * 119.99502 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00105 * 337.61234 * 7 2 1 9 9 N 1.36940 * 119.99845 * 157.60351 * 7 2 1 10 10 C 1.47426 * 125.64782 * 341.52923 * 9 7 2 11 11 C 1.54908 * 104.92948 * 204.15046 * 10 9 7 12 12 C 1.55158 * 101.58024 * 322.93552 * 11 10 9 13 13 H 1.09001 * 110.71842 * 277.13774 * 12 11 10 14 14 N 1.46496 * 110.72089 * 153.86367 * 12 11 10 15 15 C 1.34782 * 120.00001 * 155.00143 * 14 12 11 16 16 O 1.21278 * 119.99943 * 359.97438 * 15 14 12 17 17 C 1.50697 * 120.00091 * 180.02562 * 15 14 12 18 18 H 1.09000 * 110.27127 * 60.61139 * 17 15 14 19 19 C 1.54346 * 110.30518 * 182.79304 * 17 15 14 20 20 C 1.54346 * 102.39601 * 145.26933 * 19 17 15 21 21 C 1.51364 * 105.17035 * 333.65410 * 20 19 17 22 22 C 1.38242 * 109.76138 * 17.18777 * 21 20 19 23 23 C 1.38459 * 119.85338 * 179.97438 * 22 21 20 24 24 C 1.38158 * 120.24683 * 0.02562 * 23 22 21 25 25 C 1.38182 * 119.94915 * 0.02562 * 24 23 22 26 26 C 1.38267 * 119.92154 * 359.97438 * 25 24 23 27 27 Cl 1.73597 * 119.90951 * 179.97438 * 26 25 24 28 28 C 1.47283 * 125.79385 * 161.52064 * 9 7 2 29 29 H 0.97002 * 119.99552 * 359.97438 * 1 2 3 30 30 H 1.09001 * 110.36505 * 85.25360 * 10 9 7 31 31 H 1.09001 * 110.36209 * 323.04424 * 10 9 7 32 32 H 1.08995 * 111.00473 * 81.00582 * 11 10 9 33 33 H 1.08996 * 111.00537 * 204.82150 * 11 10 9 34 34 H 0.96996 * 120.00219 * 334.99495 * 14 12 11 35 35 H 1.09001 * 110.82050 * 263.49758 * 19 17 15 36 36 H 1.08997 * 110.81697 * 27.04529 * 19 17 15 37 37 H 1.08998 * 110.30416 * 214.72407 * 20 19 17 38 38 H 1.09003 * 110.30302 * 92.57650 * 20 19 17 39 39 H 1.08006 * 119.87846 * 180.02562 * 23 22 21 40 40 H 1.07995 * 120.02143 * 180.02562 * 24 23 22 41 41 H 1.08004 * 120.04101 * 180.02562 * 25 24 23 42 42 H 1.09001 * 109.86001 * 59.50422 * 28 9 7 43 43 H 1.09000 * 110.00602 * 298.43522 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6131 1.9797 -1.3937 5 1 1.3948 2.6832 0.5815 6 1 3.4853 1.4761 0.8122 7 6 2.0102 -1.2022 -0.0005 8 1 1.5312 -2.1024 0.3553 9 7 3.3021 -1.2468 -0.4524 10 6 3.9504 -0.2320 -1.3029 11 6 5.0955 -0.9870 -2.0229 12 6 5.5827 -1.9501 -0.9081 13 1 6.2759 -1.4434 -0.2366 14 7 6.2010 -3.1445 -1.4888 15 6 7.1103 -3.8442 -0.7816 16 8 7.4171 -3.4846 0.3353 17 6 7.7468 -5.0725 -1.3792 18 1 8.2894 -4.8126 -2.2880 19 6 8.6952 -5.7352 -0.3576 20 6 8.5251 -7.2365 -0.6728 21 6 7.1405 -7.3611 -1.2715 22 6 6.6931 -6.1176 -1.6774 23 6 5.4427 -5.9909 -2.2583 24 6 4.6406 -7.1021 -2.4331 25 6 5.0863 -8.3454 -2.0267 26 6 6.3346 -8.4748 -1.4464 27 17 6.8939 -10.0367 -0.9354 28 6 4.2767 -2.3147 -0.1712 29 1 -0.4849 0.8401 0.0004 30 1 4.3540 0.5744 -0.6905 31 1 3.2408 0.1632 -2.0297 32 1 4.7180 -1.5424 -2.8814 33 1 5.8883 -0.3014 -2.3217 34 1 5.9558 -3.4319 -2.3822 35 1 9.7251 -5.4187 -0.5231 36 1 8.3804 -5.5154 0.6625 37 1 8.5963 -7.8254 0.2416 38 1 9.2783 -7.5598 -1.3914 39 1 5.0929 -5.0196 -2.5760 40 1 3.6661 -6.9991 -2.8869 41 1 4.4607 -9.2151 -2.1630 42 1 3.8975 -3.2682 -0.5387 43 1 4.4615 -2.3780 0.9012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015299708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:50 Heat of formation + Delta-G solvation = 10.153259 kcal Electronic energy + Delta-G solvation = -26358.899367 eV Core-core repulsion = 22623.187892 eV Total energy + Delta-G solvation = -3735.711475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.119 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04263 -39.31950 -37.67198 -36.77484 -35.71181 -34.25179 -32.27367 -31.43794 -29.63299 -29.41512 -28.47910 -27.42059 -24.34759 -23.04688 -22.38512 -21.45493 -21.15599 -20.16162 -20.00309 -17.57793 -17.10295 -16.85380 -16.25149 -15.84812 -15.63350 -15.27176 -15.04164 -14.58949 -14.24195 -13.90473 -13.66395 -13.52663 -13.45771 -13.13450 -12.72691 -12.46465 -12.20892 -12.04656 -11.95153 -11.80435 -11.73652 -11.55222 -11.39518 -11.26898 -11.18696 -11.07933 -11.03270 -10.76265 -10.17574 -10.05852 -9.88504 -9.46687 -8.98680 -8.93131 -8.89024 -8.66896 -7.07050 -5.95931 -3.26651 0.85156 0.92749 1.86973 2.59911 3.09751 3.32340 3.33917 3.47946 3.50547 3.98366 4.13215 4.47566 4.53437 4.60791 4.69960 4.82630 4.90699 4.97542 5.02588 5.09060 5.17551 5.24100 5.31104 5.37597 5.41326 5.50028 5.52895 5.64343 5.71037 5.82420 5.91051 5.92303 5.99517 6.07238 6.12204 6.13846 6.32105 6.47310 6.50683 6.54967 6.69796 6.78530 7.51103 7.67907 8.21459 8.29818 8.81496 9.66899 10.14526 11.20152 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.018599 B = 0.002923 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.123696 B = 9578.188850 C =10494.988075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 0.882 3.118 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.276 1.276 7 C -0.241 4.241 8 H 0.092 0.908 9 N -0.607 5.607 10 C 0.112 3.888 11 C -0.136 4.136 12 C 0.129 3.871 13 H 0.098 0.902 14 N -0.716 5.716 15 C 0.522 3.478 16 O -0.532 6.532 17 C -0.069 4.069 18 H 0.115 0.885 19 C -0.103 4.103 20 C -0.081 4.081 21 C -0.081 4.081 22 C -0.081 4.081 23 C -0.095 4.095 24 C -0.102 4.102 25 C -0.107 4.107 26 C -0.023 4.023 27 Cl -0.074 7.074 28 C 0.128 3.872 29 H 0.263 0.737 30 H 0.028 0.972 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.397 0.603 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.129 0.871 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.035 0.965 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.956 -16.430 -8.512 25.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.177 4.177 3 Si 0.712 3.288 4 H -0.212 1.212 5 H -0.230 1.230 6 H -0.202 1.202 7 C -0.368 4.368 8 H 0.110 0.890 9 N -0.335 5.335 10 C -0.014 4.014 11 C -0.175 4.175 12 C 0.024 3.976 13 H 0.116 0.884 14 N -0.367 5.367 15 C 0.307 3.693 16 O -0.408 6.408 17 C -0.090 4.090 18 H 0.133 0.867 19 C -0.141 4.141 20 C -0.118 4.118 21 C -0.082 4.082 22 C -0.082 4.082 23 C -0.113 4.113 24 C -0.120 4.120 25 C -0.126 4.126 26 C -0.050 4.050 27 Cl -0.045 7.045 28 C 0.001 3.999 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.233 0.767 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.053 0.947 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.980 -16.213 -7.596 25.374 hybrid contribution 0.122 0.726 -0.383 0.830 sum 18.102 -15.487 -7.980 25.124 Atomic orbital electron populations 1.69842 1.05531 1.26603 1.53233 1.24999 0.95180 0.97374 1.00116 0.86989 0.79288 0.84714 0.77762 1.21185 1.22985 1.20167 1.18636 0.84064 0.95508 1.38563 0.89024 1.44800 1.09753 1.22129 1.56797 1.21946 0.93386 0.92609 0.93446 1.23032 0.98758 0.98288 0.97435 1.22098 0.94936 0.84765 0.95812 0.88434 1.46149 1.42579 1.28646 1.19364 1.20310 0.79132 0.84023 0.85830 1.90711 1.62228 1.68948 1.18917 1.20932 0.95132 0.91991 1.00941 0.86684 1.22281 0.98998 0.92656 1.00135 1.21111 0.92236 0.97416 1.01058 1.20323 0.96871 0.91754 0.99212 1.20148 0.94781 0.93869 0.99384 1.20848 0.92685 0.99523 0.98253 1.21061 1.00080 0.91361 0.99499 1.21019 0.94111 0.98812 0.98610 1.20477 0.95349 0.85793 1.03332 1.98363 1.89543 1.26918 1.89689 1.21714 0.87823 0.92781 0.97577 0.92680 0.95445 0.91844 0.90714 0.90965 0.76705 0.89707 0.88740 0.89865 0.89573 0.85344 0.84358 0.84612 0.94659 0.94627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.99 13.97 55.49 0.78 -27.21 16 2 C 0.02 0.64 5.43 -17.43 -0.09 0.54 16 3 Si 0.88 22.52 24.27 -169.99 -4.13 18.39 16 4 H -0.28 -6.88 6.48 56.52 0.37 -6.51 16 5 H -0.30 -7.83 7.11 56.52 0.40 -7.42 16 6 H -0.28 -7.01 6.65 56.52 0.38 -6.64 16 7 C -0.24 -6.85 10.58 -15.06 -0.16 -7.01 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 9 N -0.61 -14.63 3.22 -169.86 -0.55 -15.17 16 10 C 0.11 2.35 4.69 -2.53 -0.01 2.33 16 11 C -0.14 -2.09 6.71 -24.58 -0.17 -2.25 16 12 C 0.13 2.07 3.32 -66.10 -0.22 1.85 16 13 H 0.10 1.69 7.55 -51.93 -0.39 1.29 16 14 N -0.72 -9.00 4.57 -52.03 -0.24 -9.24 16 15 C 0.52 6.92 7.13 -10.98 -0.08 6.84 16 16 O -0.53 -9.15 15.16 5.56 0.08 -9.07 16 17 C -0.07 -0.67 3.26 -91.89 -0.30 -0.97 16 18 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 19 C -0.10 -0.94 6.32 -25.32 -0.16 -1.10 16 20 C -0.08 -0.68 6.47 -26.85 -0.17 -0.85 16 21 C -0.08 -0.82 6.05 -104.17 -0.63 -1.45 16 22 C -0.08 -0.83 5.59 -104.21 -0.58 -1.41 16 23 C -0.09 -0.95 9.47 -39.53 -0.37 -1.33 16 24 C -0.10 -0.96 10.04 -39.63 -0.40 -1.35 16 25 C -0.11 -1.00 9.82 -39.59 -0.39 -1.39 16 26 C -0.02 -0.23 6.32 -39.45 -0.25 -0.48 16 27 Cl -0.07 -0.69 28.71 -51.86 -1.49 -2.18 16 28 C 0.13 2.59 7.01 -2.92 -0.02 2.57 16 29 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 30 H 0.03 0.61 5.57 -51.93 -0.29 0.32 16 31 H 0.06 1.41 6.62 -51.93 -0.34 1.06 16 32 H 0.07 1.02 8.01 -51.93 -0.42 0.61 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.40 3.91 6.51 -40.82 -0.27 3.64 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.08 7.06 -51.93 -0.37 0.72 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.13 1.18 5.92 -52.48 -0.31 0.87 16 40 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 42 H 0.04 0.71 8.03 -51.93 -0.42 0.29 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -33.53 354.99 -10.00 -43.53 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.80 Total: 1.07 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -4.01 Total: -5.47 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.01 Total: -51.63 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.08 Total: -9.07 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.13 Total: 18.39 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.49 Total: -2.18 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.53 -10.00 -43.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015299708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.685 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds