Wall clock time and date at job start Tue Mar 31 2020 18:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86792 * 120.00336 * 2 1 4 4 H 1.48498 * 109.47196 * 264.54316 * 3 2 1 5 5 H 1.48510 * 109.47106 * 24.53857 * 3 2 1 6 6 H 1.48492 * 109.47267 * 144.53861 * 3 2 1 7 7 C 1.38813 * 119.99502 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00105 * 337.61234 * 7 2 1 9 9 N 1.36940 * 119.99845 * 157.60351 * 7 2 1 10 10 C 1.47426 * 125.64782 * 341.52923 * 9 7 2 11 11 C 1.54908 * 104.92948 * 204.15046 * 10 9 7 12 12 C 1.55158 * 101.58024 * 322.93552 * 11 10 9 13 13 H 1.09001 * 110.71842 * 277.13774 * 12 11 10 14 14 N 1.46496 * 110.72089 * 153.86367 * 12 11 10 15 15 C 1.34782 * 120.00001 * 155.00143 * 14 12 11 16 16 O 1.21278 * 119.99943 * 359.97438 * 15 14 12 17 17 C 1.50697 * 120.00091 * 180.02562 * 15 14 12 18 18 H 1.09000 * 110.27127 * 60.61139 * 17 15 14 19 19 C 1.54346 * 110.30518 * 182.79304 * 17 15 14 20 20 C 1.54346 * 102.39601 * 145.26933 * 19 17 15 21 21 C 1.51364 * 105.17035 * 333.65410 * 20 19 17 22 22 C 1.38242 * 109.76138 * 17.18777 * 21 20 19 23 23 C 1.38459 * 119.85338 * 179.97438 * 22 21 20 24 24 C 1.38158 * 120.24683 * 0.02562 * 23 22 21 25 25 C 1.38182 * 119.94915 * 0.02562 * 24 23 22 26 26 C 1.38267 * 119.92154 * 359.97438 * 25 24 23 27 27 Cl 1.73597 * 119.90951 * 179.97438 * 26 25 24 28 28 C 1.47283 * 125.79385 * 161.52064 * 9 7 2 29 29 H 0.97002 * 119.99552 * 359.97438 * 1 2 3 30 30 H 1.09001 * 110.36505 * 85.25360 * 10 9 7 31 31 H 1.09001 * 110.36209 * 323.04424 * 10 9 7 32 32 H 1.08995 * 111.00473 * 81.00582 * 11 10 9 33 33 H 1.08996 * 111.00537 * 204.82150 * 11 10 9 34 34 H 0.96996 * 120.00219 * 334.99495 * 14 12 11 35 35 H 1.09001 * 110.82050 * 263.49758 * 19 17 15 36 36 H 1.08997 * 110.81697 * 27.04529 * 19 17 15 37 37 H 1.08998 * 110.30416 * 214.72407 * 20 19 17 38 38 H 1.09003 * 110.30302 * 92.57650 * 20 19 17 39 39 H 1.08006 * 119.87846 * 180.02562 * 23 22 21 40 40 H 1.07995 * 120.02143 * 180.02562 * 24 23 22 41 41 H 1.08004 * 120.04101 * 180.02562 * 25 24 23 42 42 H 1.09001 * 109.86001 * 59.50422 * 28 9 7 43 43 H 1.09000 * 110.00602 * 298.43522 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6131 1.9797 -1.3937 5 1 1.3948 2.6832 0.5815 6 1 3.4853 1.4761 0.8122 7 6 2.0102 -1.2022 -0.0005 8 1 1.5312 -2.1024 0.3553 9 7 3.3021 -1.2468 -0.4524 10 6 3.9504 -0.2320 -1.3029 11 6 5.0955 -0.9870 -2.0229 12 6 5.5827 -1.9501 -0.9081 13 1 6.2759 -1.4434 -0.2366 14 7 6.2010 -3.1445 -1.4888 15 6 7.1103 -3.8442 -0.7816 16 8 7.4171 -3.4846 0.3353 17 6 7.7468 -5.0725 -1.3792 18 1 8.2894 -4.8126 -2.2880 19 6 8.6952 -5.7352 -0.3576 20 6 8.5251 -7.2365 -0.6728 21 6 7.1405 -7.3611 -1.2715 22 6 6.6931 -6.1176 -1.6774 23 6 5.4427 -5.9909 -2.2583 24 6 4.6406 -7.1021 -2.4331 25 6 5.0863 -8.3454 -2.0267 26 6 6.3346 -8.4748 -1.4464 27 17 6.8939 -10.0367 -0.9354 28 6 4.2767 -2.3147 -0.1712 29 1 -0.4849 0.8401 0.0004 30 1 4.3540 0.5744 -0.6905 31 1 3.2408 0.1632 -2.0297 32 1 4.7180 -1.5424 -2.8814 33 1 5.8883 -0.3014 -2.3217 34 1 5.9558 -3.4319 -2.3822 35 1 9.7251 -5.4187 -0.5231 36 1 8.3804 -5.5154 0.6625 37 1 8.5963 -7.8254 0.2416 38 1 9.2783 -7.5598 -1.3914 39 1 5.0929 -5.0196 -2.5760 40 1 3.6661 -6.9991 -2.8869 41 1 4.4607 -9.2151 -2.1630 42 1 3.8975 -3.2682 -0.5387 43 1 4.4615 -2.3780 0.9012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015299708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:49 Heat of formation + Delta-G solvation = -10.833454 kcal Electronic energy + Delta-G solvation = -26359.809419 eV Core-core repulsion = 22623.187892 eV Total energy + Delta-G solvation = -3736.621527 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.119 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.90370 -40.38454 -39.10071 -37.53361 -36.49883 -35.67553 -34.11951 -32.41687 -31.22931 -30.15650 -29.70416 -28.58054 -26.16583 -23.78108 -23.39039 -22.83523 -22.19615 -21.46152 -21.09210 -19.08914 -18.31673 -17.86939 -17.45930 -17.18521 -16.74655 -16.38719 -16.05972 -15.68178 -15.52158 -15.40425 -14.81426 -14.67336 -14.46216 -14.24046 -14.06748 -13.84840 -13.77738 -13.18058 -13.07509 -12.91261 -12.69726 -12.60431 -12.55641 -12.48828 -12.44703 -12.11849 -12.10771 -11.88457 -11.80022 -11.65298 -11.52342 -10.99854 -10.85022 -10.14529 -9.68707 -9.62018 -9.10190 -8.20388 -5.48183 0.10717 0.20069 1.13592 1.28427 1.39710 1.48005 1.56618 2.05532 2.39216 2.57704 3.02372 3.23816 3.33330 3.39522 3.58397 3.72742 3.84705 3.92019 4.01161 4.08584 4.16076 4.26648 4.35072 4.40485 4.43718 4.49723 4.60502 4.73301 4.79222 4.81835 4.89825 4.92820 4.97355 5.01969 5.05807 5.14191 5.21743 5.27089 5.34815 5.40040 5.48850 5.63525 5.76379 6.06874 6.50183 6.71793 7.19947 7.49670 8.04860 8.99443 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.018599 B = 0.002923 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.123696 B = 9578.188850 C =10494.988075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.034 4.034 3 Si 0.947 3.053 4 H -0.258 1.258 5 H -0.308 1.308 6 H -0.275 1.275 7 C -0.239 4.239 8 H 0.055 0.945 9 N -0.624 5.624 10 C 0.099 3.901 11 C -0.115 4.115 12 C 0.145 3.855 13 H 0.089 0.911 14 N -0.702 5.702 15 C 0.521 3.479 16 O -0.575 6.575 17 C -0.059 4.059 18 H 0.151 0.849 19 C -0.102 4.102 20 C -0.076 4.076 21 C -0.091 4.091 22 C -0.092 4.092 23 C -0.105 4.105 24 C -0.110 4.110 25 C -0.111 4.111 26 C -0.036 4.036 27 Cl -0.071 7.071 28 C 0.126 3.874 29 H 0.264 0.736 30 H 0.024 0.976 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.414 0.586 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.135 0.865 40 H 0.153 0.847 41 H 0.150 0.850 42 H 0.036 0.964 43 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.628 -16.400 -10.744 28.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.229 4.229 3 Si 0.776 3.224 4 H -0.183 1.183 5 H -0.237 1.237 6 H -0.201 1.201 7 C -0.367 4.367 8 H 0.073 0.927 9 N -0.352 5.352 10 C -0.025 4.025 11 C -0.153 4.153 12 C 0.039 3.961 13 H 0.107 0.893 14 N -0.355 5.355 15 C 0.308 3.692 16 O -0.453 6.453 17 C -0.079 4.079 18 H 0.168 0.832 19 C -0.140 4.140 20 C -0.113 4.113 21 C -0.092 4.092 22 C -0.093 4.093 23 C -0.123 4.123 24 C -0.128 4.128 25 C -0.130 4.130 26 C -0.063 4.063 27 Cl -0.042 7.042 28 C 0.000 4.000 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.253 0.747 35 H 0.126 0.874 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.153 0.847 40 H 0.171 0.829 41 H 0.168 0.832 42 H 0.054 0.946 43 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 20.693 -16.211 -9.880 28.082 hybrid contribution -0.753 0.564 0.365 1.010 sum 19.940 -15.647 -9.515 27.073 Atomic orbital electron populations 1.69966 1.07206 1.27405 1.55560 1.25640 0.95840 1.00754 1.00677 0.85938 0.77529 0.79940 0.79037 1.18285 1.23670 1.20106 1.18545 0.86087 0.94365 1.37746 0.92746 1.44870 1.09039 1.23763 1.57480 1.22120 0.94836 0.92521 0.93067 1.22970 0.97436 0.98049 0.96894 1.21701 0.92504 0.86103 0.95836 0.89299 1.45962 1.42000 1.27573 1.19968 1.20961 0.78553 0.84506 0.85173 1.90705 1.63588 1.70171 1.20884 1.20980 0.94990 0.89837 1.02113 0.83216 1.22278 1.00060 0.93220 0.98410 1.21136 0.91922 0.96788 1.01467 1.20572 0.97719 0.91764 0.99148 1.20254 0.95087 0.94098 0.99828 1.21025 0.92829 1.00040 0.98446 1.21306 1.00708 0.91282 0.99472 1.21263 0.94136 0.99452 0.98142 1.20648 0.95773 0.86091 1.03760 1.98361 1.89527 1.26668 1.89689 1.21808 0.89486 0.91921 0.96804 0.92722 0.95874 0.92897 0.88393 0.87163 0.74685 0.87428 0.91591 0.90013 0.87377 0.84710 0.82937 0.83202 0.94618 0.97293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.54 13.97 21.65 0.30 -60.24 16 2 C -0.03 -2.04 5.43 84.86 0.46 -1.58 16 3 Si 0.95 46.80 24.27 68.60 1.66 48.46 16 4 H -0.26 -11.50 6.48 99.48 0.64 -10.86 16 5 H -0.31 -15.43 7.11 99.48 0.71 -14.73 16 6 H -0.28 -13.42 6.65 99.48 0.66 -12.76 16 7 C -0.24 -14.01 10.58 84.03 0.89 -13.12 16 8 H 0.05 3.50 8.06 -2.91 -0.02 3.47 16 9 N -0.62 -30.07 3.22 -691.31 -2.22 -32.29 16 10 C 0.10 3.95 4.69 86.85 0.41 4.36 16 11 C -0.12 -3.08 6.71 31.99 0.21 -2.87 16 12 C 0.14 4.34 3.32 46.18 0.15 4.49 16 13 H 0.09 2.91 7.55 -2.39 -0.02 2.89 16 14 N -0.70 -15.81 4.57 -436.92 -2.00 -17.80 16 15 C 0.52 12.81 7.13 87.66 0.62 13.43 16 16 O -0.57 -19.39 15.16 -3.02 -0.05 -19.44 16 17 C -0.06 -0.98 3.26 -11.62 -0.04 -1.02 16 18 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 19 C -0.10 -1.67 6.32 31.51 0.20 -1.47 16 20 C -0.08 -1.11 6.47 30.52 0.20 -0.91 16 21 C -0.09 -1.69 6.05 -19.57 -0.12 -1.81 16 22 C -0.09 -1.70 5.59 -19.60 -0.11 -1.81 16 23 C -0.11 -1.92 9.47 22.30 0.21 -1.71 16 24 C -0.11 -1.90 10.04 22.24 0.22 -1.67 16 25 C -0.11 -1.94 9.82 22.26 0.22 -1.72 16 26 C -0.04 -0.68 6.32 22.36 0.14 -0.54 16 27 Cl -0.07 -1.25 28.71 -2.72 -0.08 -1.32 16 28 C 0.13 5.11 7.01 86.68 0.61 5.72 16 29 H 0.26 15.82 8.31 -92.71 -0.77 15.04 16 30 H 0.02 0.97 5.57 -2.39 -0.01 0.95 16 31 H 0.05 2.22 6.62 -2.39 -0.02 2.20 16 32 H 0.10 2.22 8.01 -2.39 -0.02 2.20 16 33 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.41 6.65 6.51 -92.71 -0.60 6.04 16 35 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.48 7.06 -2.39 -0.02 1.47 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.14 2.17 5.92 -2.91 -0.02 2.15 16 40 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.04 1.43 8.03 -2.39 -0.02 1.41 16 43 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -75.88 354.99 2.24 -73.64 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.33 Total: 11.20 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 4.28 Total: -2.21 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -3.92 Total: -110.33 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.05 Total: -19.44 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.66 Total: 48.46 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.32 kcal Total: -75.88 2.24 -73.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015299708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.809 kcal (2) G-P(sol) polarization free energy of solvation -75.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds