Wall clock time and date at job start Tue Mar 31 2020 17:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45192 * 109.47564 * 2 1 4 4 C 1.34230 * 117.00453 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99837 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00313 * 179.97438 * 4 3 2 7 7 C 1.53000 * 109.46897 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.47140 * 55.00211 * 7 6 4 9 9 C 1.50701 * 109.46877 * 174.99948 * 7 6 4 10 10 H 1.07999 * 120.00541 * 240.00195 * 9 7 6 11 11 C 1.37885 * 119.99652 * 60.00597 * 9 7 6 12 12 N 1.31510 * 120.00050 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 119.99637 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47147 * 89.99896 * 13 11 9 15 15 H 1.48498 * 109.46982 * 209.99520 * 13 11 9 16 16 H 1.48494 * 109.47626 * 329.99603 * 13 11 9 17 17 O 1.42898 * 109.47349 * 294.99977 * 7 6 4 18 18 C 1.35263 * 116.99726 * 150.00026 * 17 7 6 19 19 N 1.32218 * 120.82067 * 359.97438 * 18 17 7 20 20 C 1.32898 * 121.43540 * 180.02562 * 19 18 17 21 21 O 1.35382 * 118.61186 * 180.02562 * 20 19 18 22 22 N 1.31767 * 122.77377 * 359.97438 * 20 19 18 23 23 C 1.33923 * 120.49311 * 0.03853 * 22 20 19 24 24 N 1.33568 * 121.76408 * 180.02562 * 23 22 20 25 25 C 1.31554 * 119.58902 * 179.69145 * 24 23 22 26 26 C 1.39528 * 120.74402 * 0.52904 * 25 24 23 27 27 N 1.31507 * 120.66309 * 359.46032 * 26 25 24 28 28 C 1.33136 * 119.59676 * 0.26199 * 27 26 25 29 29 H 1.08999 * 109.47295 * 300.00427 * 1 2 3 30 30 H 1.08996 * 109.46884 * 59.99589 * 1 2 3 31 31 H 1.09001 * 109.47672 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47295 * 239.99573 * 2 1 3 33 33 H 1.09001 * 109.46819 * 119.99677 * 2 1 3 34 34 H 1.09001 * 109.46898 * 60.00872 * 6 4 3 35 35 H 1.08998 * 109.47355 * 300.00353 * 6 4 3 36 36 H 0.96999 * 120.00284 * 180.02562 * 12 11 9 37 37 H 0.96691 * 113.99790 * 90.00403 * 21 20 19 38 38 H 1.08006 * 119.62599 * 180.27047 * 25 24 23 39 39 H 1.08002 * 119.67178 * 179.74764 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3688 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9373 0.0000 7 6 5.4488 2.8571 0.0001 8 1 5.7808 2.2490 -0.8415 9 6 6.0246 4.2442 -0.1243 10 1 6.6594 4.4923 -0.9620 11 6 5.7409 5.1966 0.8316 12 7 4.9676 4.8946 1.8515 13 14 6.4552 6.9157 0.6778 14 1 5.5212 7.7724 -0.0960 15 1 6.6504 7.4935 2.0317 16 1 7.7618 6.8479 -0.0245 17 8 5.8945 2.2640 1.2214 18 6 7.0479 1.5588 1.1764 19 7 7.7210 1.4325 0.0454 20 6 8.8551 0.7421 -0.0128 21 8 9.4978 0.6500 -1.2008 22 7 9.3809 0.1442 1.0371 23 6 8.7769 0.2111 2.2305 24 7 9.2876 -0.3847 3.3114 25 6 8.6615 -0.2862 4.4642 26 6 7.4651 0.4242 4.5677 27 7 6.9449 1.0185 3.5163 28 6 7.5646 0.9363 2.3408 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.5846 3.4699 0.8896 35 1 3.5853 3.4690 -0.8904 36 1 4.7677 5.5647 2.5238 37 1 10.1402 1.3558 -1.3561 38 1 9.0762 -0.7641 5.3395 39 1 6.9636 0.4905 5.5219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226992099.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:19 Heat of formation + Delta-G solvation = -57.104399 kcal Electronic energy + Delta-G solvation = -29157.337433 eV Core-core repulsion = 24874.459939 eV Total energy + Delta-G solvation = -4282.877494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.116 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.59717 -39.91991 -39.26601 -38.17692 -36.34126 -35.94655 -34.62281 -33.35908 -32.25924 -31.65672 -30.71568 -29.95401 -26.51488 -25.67748 -24.67132 -23.41499 -22.67905 -21.95662 -20.39361 -19.90210 -18.63714 -18.02576 -17.55731 -17.20809 -16.93069 -16.24282 -15.94732 -15.90249 -15.56982 -14.98008 -14.76709 -14.57232 -13.95060 -13.89046 -13.72643 -13.28360 -12.74759 -12.72266 -12.36142 -12.15084 -11.94159 -11.83705 -11.61863 -11.47726 -11.37447 -11.34064 -11.16540 -11.12659 -10.92945 -10.60115 -10.20777 -9.88634 -9.82647 -9.69111 -9.41958 -9.31096 -8.90216 -8.38690 -8.14464 -6.39201 -4.58655 0.41892 0.55528 2.17318 2.91030 2.94499 3.09073 3.18736 3.19228 3.21321 3.26360 3.55788 3.93175 4.13362 4.26804 4.31188 4.41316 4.86270 5.00955 5.04651 5.09839 5.11337 5.21915 5.32836 5.39900 5.42398 5.79906 5.85866 5.86193 6.02857 6.18132 6.31919 6.45978 6.63825 6.78633 6.90557 7.14153 7.47098 7.53304 7.66682 7.74004 7.76164 8.08887 8.40093 8.45651 8.58709 9.17860 10.62341 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.007661 B = 0.005498 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3654.199733 B = 5091.397076 C = 6753.919716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.364 6.364 4 C 0.457 3.543 5 O -0.518 6.518 6 C -0.103 4.103 7 C 0.214 3.786 8 H 0.062 0.938 9 C -0.548 4.548 10 H 0.075 0.925 11 C 0.080 3.920 12 N -0.855 5.855 13 Si 0.900 3.100 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.271 1.271 17 O -0.232 6.232 18 C 0.494 3.506 19 N -0.585 5.585 20 C 0.575 3.425 21 O -0.457 6.457 22 N -0.558 5.558 23 C 0.342 3.658 24 N -0.437 5.437 25 C 0.127 3.873 26 C 0.023 3.977 27 N -0.350 5.350 28 C -0.048 4.048 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.142 0.858 35 H 0.109 0.891 36 H 0.271 0.729 37 H 0.414 0.586 38 H 0.181 0.819 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.682 -5.920 2.551 6.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.282 6.282 4 C 0.301 3.699 5 O -0.406 6.406 6 C -0.140 4.140 7 C 0.161 3.839 8 H 0.080 0.920 9 C -0.584 4.584 10 H 0.093 0.907 11 C -0.128 4.128 12 N -0.489 5.489 13 Si 0.726 3.274 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.196 1.196 17 O -0.125 6.125 18 C 0.294 3.706 19 N -0.334 5.334 20 C 0.267 3.733 21 O -0.260 6.260 22 N -0.295 5.295 23 C 0.096 3.904 24 N -0.155 5.155 25 C -0.051 4.051 26 C -0.152 4.152 27 N -0.065 5.065 28 C -0.184 4.184 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.159 0.841 35 H 0.127 0.873 36 H 0.081 0.919 37 H 0.274 0.726 38 H 0.197 0.803 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.653 -6.581 1.684 6.991 hybrid contribution 0.277 1.220 0.656 1.413 sum -1.376 -5.361 2.340 6.009 Atomic orbital electron populations 1.21776 0.93171 1.02385 1.03370 1.22871 0.94937 0.81640 1.02073 1.86563 1.25897 1.31108 1.84622 1.24859 0.79650 0.94203 0.71139 1.90606 1.60298 1.43709 1.45988 1.21886 0.96071 0.88399 1.07689 1.20178 0.88668 0.93409 0.81690 0.91976 1.21349 1.32806 0.93666 1.10620 0.90704 1.25170 0.93813 0.99396 0.94431 1.69847 1.33686 1.34746 1.10648 0.86454 0.79880 0.83224 0.77792 1.19909 1.20845 1.19559 1.86588 1.29297 1.55800 1.40837 1.19994 0.85203 0.80477 0.84916 1.67754 1.11840 1.25823 1.27970 1.19785 0.85041 0.84277 0.84181 1.84614 1.57651 1.53427 1.30310 1.67705 1.36081 1.28299 0.97454 1.19411 0.87988 0.91258 0.91770 1.68371 1.31383 1.17940 0.97799 1.24245 0.92012 0.93175 0.95626 1.24016 0.95526 0.96896 0.98716 1.68480 1.29072 1.11501 0.97469 1.20328 0.97886 1.05848 0.94357 0.91559 0.91653 0.90794 0.91822 0.91764 0.84050 0.87272 0.91907 0.72628 0.80252 0.80526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.29 37.16 0.38 -1.23 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.36 -6.62 10.22 -39.26 -0.40 -7.02 16 4 C 0.46 9.60 7.84 36.01 0.28 9.88 16 5 O -0.52 -12.11 15.17 -24.05 -0.36 -12.47 16 6 C -0.10 -2.24 5.22 -27.88 -0.15 -2.38 16 7 C 0.21 5.15 1.61 -27.88 -0.04 5.11 16 8 H 0.06 1.54 6.84 -51.93 -0.36 1.18 16 9 C -0.55 -13.70 8.90 -34.44 -0.31 -14.01 16 10 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 11 C 0.08 1.98 5.24 -17.82 -0.09 1.89 16 12 N -0.85 -21.72 10.93 55.43 0.61 -21.11 16 13 Si 0.90 19.42 29.54 -169.99 -5.02 14.40 16 14 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 17 O -0.23 -5.86 8.25 -31.91 -0.26 -6.12 16 18 C 0.49 11.78 7.57 -16.03 -0.12 11.66 16 19 N -0.58 -13.26 8.81 -14.35 -0.13 -13.38 16 20 C 0.57 11.68 8.65 -91.22 -0.79 10.89 16 21 O -0.46 -7.55 13.63 -17.84 -0.24 -7.79 16 22 N -0.56 -11.59 10.53 -14.39 -0.15 -11.75 16 23 C 0.34 7.04 7.65 -157.75 -1.21 5.83 16 24 N -0.44 -7.69 10.56 -12.44 -0.13 -7.82 16 25 C 0.13 1.64 11.21 -17.19 -0.19 1.45 16 26 C 0.02 0.32 11.21 -17.21 -0.19 0.13 16 27 N -0.35 -6.97 10.33 -10.64 -0.11 -7.08 16 28 C -0.05 -1.06 6.63 -84.63 -0.56 -1.62 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 33 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 34 H 0.14 3.30 6.22 -51.93 -0.32 2.98 16 35 H 0.11 2.13 8.14 -51.93 -0.42 1.71 16 36 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 37 H 0.41 4.46 9.06 45.56 0.41 4.87 16 38 H 0.18 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.18 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 350.68 15.07 5.28 5.28 Total: -1.00 -33.56 350.68 -6.87 -40.43 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -3.19 Total: 5.74 kcal Atomic # 6 Polarization: 31.46 SS G_CDS: -2.76 Total: 28.70 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 0.09 Total: -61.15 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.27 Total: -33.41 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.56 -6.87 -40.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226992099.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.671 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds