Wall clock time and date at job start Tue Mar 31 2020 17:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45192 * 109.47564 * 2 1 4 4 C 1.34230 * 117.00453 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99837 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00313 * 179.97438 * 4 3 2 7 7 C 1.53000 * 109.46897 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.47140 * 55.00211 * 7 6 4 9 9 C 1.50701 * 109.46877 * 174.99948 * 7 6 4 10 10 H 1.07999 * 120.00541 * 240.00195 * 9 7 6 11 11 C 1.37885 * 119.99652 * 60.00597 * 9 7 6 12 12 N 1.31510 * 120.00050 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 119.99637 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47147 * 89.99896 * 13 11 9 15 15 H 1.48498 * 109.46982 * 209.99520 * 13 11 9 16 16 H 1.48494 * 109.47626 * 329.99603 * 13 11 9 17 17 O 1.42898 * 109.47349 * 294.99977 * 7 6 4 18 18 C 1.35263 * 116.99726 * 150.00026 * 17 7 6 19 19 N 1.32218 * 120.82067 * 359.97438 * 18 17 7 20 20 C 1.32898 * 121.43540 * 180.02562 * 19 18 17 21 21 O 1.35382 * 118.61186 * 180.02562 * 20 19 18 22 22 N 1.31767 * 122.77377 * 359.97438 * 20 19 18 23 23 C 1.33923 * 120.49311 * 0.03853 * 22 20 19 24 24 N 1.33568 * 121.76408 * 180.02562 * 23 22 20 25 25 C 1.31554 * 119.58902 * 179.69145 * 24 23 22 26 26 C 1.39528 * 120.74402 * 0.52904 * 25 24 23 27 27 N 1.31507 * 120.66309 * 359.46032 * 26 25 24 28 28 C 1.33136 * 119.59676 * 0.26199 * 27 26 25 29 29 H 1.08999 * 109.47295 * 300.00427 * 1 2 3 30 30 H 1.08996 * 109.46884 * 59.99589 * 1 2 3 31 31 H 1.09001 * 109.47672 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47295 * 239.99573 * 2 1 3 33 33 H 1.09001 * 109.46819 * 119.99677 * 2 1 3 34 34 H 1.09001 * 109.46898 * 60.00872 * 6 4 3 35 35 H 1.08998 * 109.47355 * 300.00353 * 6 4 3 36 36 H 0.96999 * 120.00284 * 180.02562 * 12 11 9 37 37 H 0.96691 * 113.99790 * 90.00403 * 21 20 19 38 38 H 1.08006 * 119.62599 * 180.27047 * 25 24 23 39 39 H 1.08002 * 119.67178 * 179.74764 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3688 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9373 0.0000 7 6 5.4488 2.8571 0.0001 8 1 5.7808 2.2490 -0.8415 9 6 6.0246 4.2442 -0.1243 10 1 6.6594 4.4923 -0.9620 11 6 5.7409 5.1966 0.8316 12 7 4.9676 4.8946 1.8515 13 14 6.4552 6.9157 0.6778 14 1 5.5212 7.7724 -0.0960 15 1 6.6504 7.4935 2.0317 16 1 7.7618 6.8479 -0.0245 17 8 5.8945 2.2640 1.2214 18 6 7.0479 1.5588 1.1764 19 7 7.7210 1.4325 0.0454 20 6 8.8551 0.7421 -0.0128 21 8 9.4978 0.6500 -1.2008 22 7 9.3809 0.1442 1.0371 23 6 8.7769 0.2111 2.2305 24 7 9.2876 -0.3847 3.3114 25 6 8.6615 -0.2862 4.4642 26 6 7.4651 0.4242 4.5677 27 7 6.9449 1.0185 3.5163 28 6 7.5646 0.9363 2.3408 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.5846 3.4699 0.8896 35 1 3.5853 3.4690 -0.8904 36 1 4.7677 5.5647 2.5238 37 1 10.1402 1.3558 -1.3561 38 1 9.0762 -0.7641 5.3395 39 1 6.9636 0.4905 5.5219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226992099.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:18 Heat of formation + Delta-G solvation = -86.230354 kcal Electronic energy + Delta-G solvation = -29158.600429 eV Core-core repulsion = 24874.459939 eV Total energy + Delta-G solvation = -4284.140490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.116 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.04153 -41.53844 -40.70786 -39.79655 -37.80768 -37.47511 -36.10776 -35.09840 -33.80391 -32.97044 -32.22323 -31.43672 -28.28782 -27.13485 -26.09291 -24.87562 -24.12517 -23.44847 -21.90830 -21.44270 -20.17832 -19.53492 -19.06557 -18.78032 -18.43718 -17.85188 -17.49342 -17.44497 -17.22698 -16.51262 -16.18565 -15.92254 -15.54719 -15.31027 -15.01230 -14.80159 -14.31903 -14.06220 -13.73461 -13.61240 -13.42273 -13.20632 -13.04366 -12.92836 -12.85312 -12.82863 -12.79292 -12.63743 -12.50276 -12.28682 -11.64651 -11.55214 -11.51130 -11.31403 -10.99668 -10.91790 -10.75498 -9.84397 -9.72855 -8.26173 -6.52205 -0.98837 -0.81795 0.69167 1.23424 1.38181 1.42369 1.51002 1.56023 1.73331 1.80579 2.02632 2.34176 2.50172 2.84079 2.87956 3.08260 3.15022 3.61779 3.78612 3.87354 3.89100 3.96345 4.09205 4.30290 4.31868 4.40398 4.53341 4.61306 4.81453 4.89712 4.90882 5.10543 5.18778 5.25565 5.37132 5.46681 5.62794 5.87829 6.10337 6.26796 6.43971 6.48190 6.66437 6.80232 6.91313 7.26688 8.75028 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.007661 B = 0.005498 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3654.199733 B = 5091.397076 C = 6753.919716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 O -0.362 6.362 4 C 0.464 3.536 5 O -0.546 6.546 6 C -0.097 4.097 7 C 0.217 3.783 8 H 0.042 0.958 9 C -0.564 4.564 10 H 0.065 0.935 11 C 0.046 3.954 12 N -0.874 5.874 13 Si 0.957 3.043 14 H -0.261 1.261 15 H -0.283 1.283 16 H -0.276 1.276 17 O -0.253 6.253 18 C 0.465 3.535 19 N -0.604 5.604 20 C 0.564 3.436 21 O -0.454 6.454 22 N -0.561 5.561 23 C 0.325 3.675 24 N -0.456 5.456 25 C 0.158 3.842 26 C 0.051 3.949 27 N -0.402 5.402 28 C -0.076 4.076 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.272 0.728 37 H 0.435 0.565 38 H 0.250 0.750 39 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.738 -6.658 4.720 8.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.279 6.279 4 C 0.309 3.691 5 O -0.436 6.436 6 C -0.134 4.134 7 C 0.164 3.836 8 H 0.060 0.940 9 C -0.601 4.601 10 H 0.083 0.917 11 C -0.161 4.161 12 N -0.509 5.509 13 Si 0.782 3.218 14 H -0.185 1.185 15 H -0.208 1.208 16 H -0.201 1.201 17 O -0.148 6.148 18 C 0.266 3.734 19 N -0.353 5.353 20 C 0.257 3.743 21 O -0.261 6.261 22 N -0.298 5.298 23 C 0.079 3.921 24 N -0.174 5.174 25 C -0.021 4.021 26 C -0.125 4.125 27 N -0.117 5.117 28 C -0.208 4.208 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.082 0.918 37 H 0.299 0.701 38 H 0.266 0.734 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.700 -7.305 3.779 8.398 hybrid contribution 0.343 1.242 0.227 1.308 sum -1.357 -6.063 4.006 7.392 Atomic orbital electron populations 1.21804 0.89635 1.04480 1.03842 1.23283 0.97640 0.79660 1.01907 1.86540 1.23984 1.33506 1.83903 1.24591 0.80482 0.93466 0.70532 1.90592 1.61218 1.44414 1.47410 1.21726 0.94942 0.89077 1.07686 1.20041 0.89811 0.92581 0.81201 0.93958 1.21441 1.33220 0.94648 1.10777 0.91689 1.25750 0.94021 1.02274 0.94007 1.69948 1.34386 1.35583 1.11030 0.85578 0.79085 0.79565 0.77610 1.18529 1.20823 1.20105 1.86520 1.30481 1.57102 1.40672 1.20368 0.85235 0.81499 0.86322 1.67681 1.12646 1.26504 1.28427 1.19897 0.84943 0.84377 0.85059 1.84581 1.58079 1.54561 1.28833 1.67766 1.36110 1.28055 0.97911 1.19649 0.87979 0.91846 0.92578 1.68530 1.32120 1.18398 0.98327 1.25432 0.90502 0.90360 0.95797 1.25111 0.95241 0.93295 0.98895 1.68482 1.30711 1.14344 0.98179 1.20242 0.98739 1.07046 0.94730 0.91327 0.90920 0.87830 0.91673 0.92394 0.85482 0.85639 0.91836 0.70073 0.73444 0.75237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 10.29 71.98 0.74 -2.01 16 2 C 0.05 1.41 6.19 71.98 0.45 1.86 16 3 O -0.36 -13.31 10.22 -51.41 -0.53 -13.84 16 4 C 0.46 20.21 7.84 71.24 0.56 20.77 16 5 O -0.55 -26.71 15.17 27.03 0.41 -26.30 16 6 C -0.10 -4.39 5.22 29.85 0.16 -4.24 16 7 C 0.22 11.05 1.61 29.85 0.05 11.10 16 8 H 0.04 2.25 6.84 -2.39 -0.02 2.23 16 9 C -0.56 -29.44 8.90 25.60 0.23 -29.21 16 10 H 0.06 3.40 7.81 -2.91 -0.02 3.38 16 11 C 0.05 2.30 5.24 84.66 0.44 2.75 16 12 N -0.87 -45.49 10.93 21.45 0.23 -45.25 16 13 Si 0.96 40.35 29.54 68.60 2.03 42.37 16 14 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 15 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 17 O -0.25 -13.44 8.25 -71.68 -0.59 -14.03 16 18 C 0.47 23.34 7.57 85.51 0.65 23.99 16 19 N -0.60 -28.96 8.81 -425.11 -3.75 -32.70 16 20 C 0.56 23.88 8.65 180.56 1.56 25.44 16 21 O -0.45 -15.43 13.63 -86.74 -1.18 -16.61 16 22 N -0.56 -23.77 10.53 -312.70 -3.29 -27.06 16 23 C 0.32 13.38 7.65 135.00 1.03 14.41 16 24 N -0.46 -14.99 10.56 -193.27 -2.04 -17.03 16 25 C 0.16 3.34 11.21 85.05 0.95 4.29 16 26 C 0.05 1.25 11.21 85.05 0.95 2.20 16 27 N -0.40 -15.80 10.33 -187.58 -1.94 -17.74 16 28 C -0.08 -3.40 6.63 40.68 0.27 -3.13 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.86 8.13 -2.39 -0.02 1.85 16 33 H 0.06 1.75 8.13 -2.39 -0.02 1.73 16 34 H 0.13 6.19 6.22 -2.39 -0.01 6.17 16 35 H 0.13 5.09 8.14 -2.39 -0.02 5.07 16 36 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 37 H 0.44 9.63 9.06 -74.06 -0.67 8.96 16 38 H 0.25 1.73 8.06 -2.91 -0.02 1.71 16 39 H 0.23 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -78.92 350.68 -2.14 -81.07 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.46 Total: 18.90 kcal Atomic # 6 Polarization: 60.20 SS G_CDS: 8.04 Total: 68.24 kcal Atomic # 7 Polarization: -129.02 SS G_CDS: -10.78 Total: -139.80 kcal Atomic # 8 Polarization: -68.89 SS G_CDS: -1.89 Total: -70.78 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.37 kcal Total: -78.92 -2.14 -81.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226992099.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.163 kcal (2) G-P(sol) polarization free energy of solvation -78.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds