Wall clock time and date at job start Tue Mar 31 2020 17:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37912 * 120.06792 * 2 1 4 4 C 1.38489 * 120.13298 * 180.02562 * 3 2 1 5 5 Cl 1.73596 * 119.86883 * 179.72549 * 4 3 2 6 6 C 1.38544 * 120.26020 * 359.97438 * 4 3 2 7 7 C 1.37866 * 120.13421 * 0.02562 * 6 4 3 8 8 C 1.39589 * 120.06235 * 180.02562 * 2 1 3 9 9 C 1.47785 * 120.13360 * 0.02562 * 8 2 1 10 10 O 1.21565 * 119.99719 * 305.05162 * 9 8 2 11 11 N 1.34776 * 120.00132 * 125.05253 * 9 8 2 12 12 C 1.47166 * 120.71136 * 184.06725 * 11 9 8 13 13 C 1.53879 * 108.02718 * 132.75755 * 12 11 9 14 14 H 1.08995 * 112.09524 * 181.92097 * 13 12 11 15 15 C 1.54550 * 107.82970 * 306.51190 * 13 12 11 16 16 C 1.54272 * 104.85261 * 89.07997 * 15 13 12 17 17 C 1.54545 * 104.84656 * 359.97438 * 16 15 13 18 18 H 1.09006 * 112.18148 * 146.41694 * 17 16 15 19 19 C 1.47161 * 120.71023 * 3.79427 * 11 9 8 20 20 N 1.48306 * 104.35683 * 24.71147 * 17 16 15 21 21 C 1.36936 * 128.07747 * 139.11932 * 20 17 16 22 22 H 1.07999 * 119.99464 * 204.22135 * 21 20 17 23 23 C 1.38807 * 120.00062 * 24.21728 * 21 20 17 24 24 N 1.31618 * 120.00365 * 5.23030 * 23 21 20 25 25 Si 1.86805 * 119.99981 * 185.23369 * 23 21 20 26 26 H 1.48499 * 109.46844 * 359.97438 * 25 23 21 27 27 H 1.48490 * 109.47370 * 119.99926 * 25 23 21 28 28 H 1.48496 * 109.46726 * 240.00047 * 25 23 21 29 29 H 1.09001 * 109.46911 * 85.17187 * 1 2 3 30 30 H 1.08997 * 109.47463 * 205.17079 * 1 2 3 31 31 H 1.08999 * 109.46910 * 325.17376 * 1 2 3 32 32 H 1.08006 * 119.93508 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.92880 * 179.97438 * 6 4 3 34 34 H 1.07997 * 120.06697 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.74802 * 252.39023 * 12 11 9 36 36 H 1.08999 * 109.74962 * 13.07108 * 12 11 9 37 37 H 1.08999 * 110.36251 * 207.92450 * 15 13 12 38 38 H 1.09007 * 110.36109 * 330.23234 * 15 13 12 39 39 H 1.09006 * 110.36246 * 241.14653 * 16 15 13 40 40 H 1.09004 * 110.36687 * 118.83918 * 16 15 13 41 41 H 1.08998 * 109.74757 * 346.86935 * 19 11 9 42 42 H 1.09001 * 109.75110 * 107.60441 * 19 11 9 43 43 H 0.97002 * 120.00135 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1980 1.1935 0.0000 4 6 3.5829 1.1951 -0.0005 5 17 4.4458 2.7014 -0.0077 6 6 4.2825 -0.0008 -0.0005 7 6 3.6027 -1.2002 -0.0005 8 6 2.2063 -1.2081 -0.0005 9 6 1.4718 -2.4905 -0.0017 10 8 0.6447 -2.7179 0.8597 11 7 1.7189 -3.4078 -0.9577 12 6 0.9350 -4.6514 -1.0266 13 6 0.4983 -4.8587 -2.4875 14 1 -0.1186 -5.7491 -2.6086 15 6 -0.2163 -3.5706 -2.9551 16 6 0.9075 -2.6782 -3.5212 17 6 2.1993 -3.5078 -3.3437 18 1 2.9153 -3.3313 -4.1465 19 6 2.7743 -3.1846 -1.9586 20 7 1.7311 -4.9146 -3.3097 21 6 2.3039 -6.0098 -3.8992 22 1 1.7001 -6.8734 -4.1356 23 6 3.6605 -6.0099 -4.1931 24 7 4.4163 -5.0015 -3.8131 25 14 4.4136 -7.4411 -5.1281 26 1 3.3591 -8.4398 -5.4375 27 1 5.0131 -6.9455 -6.3929 28 1 5.4672 -8.0760 -4.2963 29 1 -0.3633 0.0865 -1.0240 30 1 -0.3634 -0.9300 0.4371 31 1 -0.3633 0.8436 0.5869 32 1 1.6581 2.1289 0.0004 33 1 5.3624 0.0067 -0.0014 34 1 4.1491 -2.1318 -0.0010 35 1 1.5487 -5.4920 -0.7028 36 1 0.0564 -4.5689 -0.3868 37 1 -0.9448 -3.8018 -3.7322 38 1 -0.7026 -3.0793 -2.1122 39 1 0.9738 -1.7479 -2.9569 40 1 0.7317 -2.4706 -4.5768 41 1 3.0964 -2.1437 -1.9283 42 1 3.6214 -3.8391 -1.7530 43 1 5.3643 -5.0014 -4.0189 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029451237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:41 Heat of formation + Delta-G solvation = 19.101365 kcal Electronic energy + Delta-G solvation = -27743.703131 eV Core-core repulsion = 24008.379676 eV Total energy + Delta-G solvation = -3735.323456 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.119 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.58724 -39.06723 -37.63143 -36.51298 -33.88016 -32.78514 -32.50063 -31.31037 -30.26697 -29.31197 -27.32634 -26.20582 -24.19681 -23.83335 -23.00394 -21.76716 -19.99943 -19.67777 -18.70530 -17.56411 -16.48168 -16.25403 -15.84651 -15.60046 -15.20046 -14.69323 -14.27488 -13.95420 -13.77955 -13.60134 -13.39313 -13.09870 -13.01574 -12.86005 -12.79747 -12.36932 -12.00526 -11.82905 -11.76371 -11.64224 -11.51317 -11.29224 -11.03388 -10.95270 -10.87725 -10.82444 -10.42529 -10.06779 -9.94130 -9.78437 -9.61086 -9.46771 -8.95888 -8.75079 -8.63162 -8.13973 -6.81322 -5.95562 -3.33764 0.84418 1.19889 1.98034 2.94005 3.29819 3.37220 3.38689 3.40195 3.68600 4.35513 4.65881 4.71118 4.78192 5.05504 5.14046 5.25532 5.27123 5.39916 5.58833 5.63391 5.67979 5.69888 5.74101 5.76672 5.89345 5.99428 5.99761 6.08939 6.11002 6.17919 6.26083 6.37066 6.43713 6.49181 6.56672 6.59622 6.65390 6.69453 6.83732 6.91948 7.19818 7.38138 7.61953 7.98217 8.08275 8.55639 8.97778 9.58964 10.39890 11.19315 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.014468 B = 0.003999 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.828558 B = 7000.309003 C = 8136.163483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.027 4.027 3 C -0.120 4.120 4 C -0.017 4.017 5 Cl -0.074 7.074 6 C -0.120 4.120 7 C -0.067 4.067 8 C -0.110 4.110 9 C 0.552 3.448 10 O -0.556 6.556 11 N -0.579 5.579 12 C 0.102 3.898 13 C 0.133 3.867 14 H 0.079 0.921 15 C -0.123 4.123 16 C -0.136 4.136 17 C 0.173 3.827 18 H 0.106 0.894 19 C 0.098 3.902 20 N -0.583 5.583 21 C -0.229 4.229 22 H 0.074 0.926 23 C 0.004 3.996 24 N -0.911 5.911 25 Si 0.911 3.089 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.290 1.290 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.179 11.759 5.674 13.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.029 4.029 3 C -0.138 4.138 4 C -0.044 4.044 5 Cl -0.045 7.045 6 C -0.139 4.139 7 C -0.086 4.086 8 C -0.113 4.113 9 C 0.340 3.660 10 O -0.437 6.437 11 N -0.309 5.309 12 C -0.022 4.022 13 C 0.024 3.976 14 H 0.097 0.903 15 C -0.162 4.162 16 C -0.176 4.176 17 C 0.065 3.935 18 H 0.124 0.876 19 C -0.026 4.026 20 N -0.304 5.304 21 C -0.358 4.358 22 H 0.092 0.908 23 C -0.194 4.194 24 N -0.556 5.556 25 Si 0.741 3.259 26 H -0.204 1.204 27 H -0.216 1.216 28 H -0.216 1.216 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.111 0.889 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.286 11.608 5.980 13.465 hybrid contribution 0.842 -0.498 -0.497 1.098 sum -2.444 11.110 5.483 12.628 Atomic orbital electron populations 1.21058 0.90043 1.04937 1.02792 1.19784 0.96652 0.90730 0.95690 1.20809 0.91810 0.98429 1.02788 1.21040 0.92406 0.87019 1.03955 1.98365 1.77055 1.32203 1.96859 1.20952 1.00668 0.90302 1.01990 1.21323 0.92785 0.98450 0.96042 1.19959 0.93951 0.93817 1.03600 1.18192 0.82609 0.83350 0.81882 1.90701 1.36045 1.79201 1.37705 1.48199 1.35532 1.18547 1.28597 1.22410 0.95261 0.85174 0.99346 1.22008 0.90335 0.96057 0.89154 0.90259 1.22464 0.97468 0.96986 0.99320 1.22642 0.97756 0.97681 0.99472 1.21562 0.93140 0.84016 0.94773 0.87607 1.22734 0.89992 1.00192 0.89653 1.45101 1.25641 1.03149 1.56517 1.19003 0.90571 0.93810 1.32381 0.90847 1.24990 0.95713 0.97973 1.00702 1.69830 1.05394 1.31118 1.49286 0.86082 0.79056 0.81689 0.79097 1.20368 1.21643 1.21644 0.90791 0.88861 0.91186 0.84642 0.84443 0.84195 0.91690 0.90704 0.92664 0.92740 0.93181 0.92748 0.91831 0.88935 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.68 36.01 0.35 -1.29 16 2 C -0.03 -0.37 5.91 -104.23 -0.62 -0.99 16 3 C -0.12 -1.43 9.49 -39.61 -0.38 -1.81 16 4 C -0.02 -0.21 6.33 -39.38 -0.25 -0.46 16 5 Cl -0.07 -0.79 28.95 -51.86 -1.50 -2.30 16 6 C -0.12 -1.49 9.81 -39.60 -0.39 -1.88 16 7 C -0.07 -0.95 7.56 -39.19 -0.30 -1.24 16 8 C -0.11 -1.70 4.79 -104.97 -0.50 -2.21 16 9 C 0.55 9.92 6.54 -12.36 -0.08 9.83 16 10 O -0.56 -11.12 14.61 5.31 0.08 -11.04 16 11 N -0.58 -10.74 2.26 -172.96 -0.39 -11.13 16 12 C 0.10 1.94 5.88 -3.22 -0.02 1.92 16 13 C 0.13 2.57 4.32 -65.67 -0.28 2.28 16 14 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 15 C -0.12 -2.14 6.18 -25.25 -0.16 -2.30 16 16 C -0.14 -2.46 6.18 -25.25 -0.16 -2.62 16 17 C 0.17 3.64 3.07 -65.91 -0.20 3.44 16 18 H 0.11 2.53 6.90 -51.93 -0.36 2.17 16 19 C 0.10 1.89 4.69 -3.47 -0.02 1.88 16 20 N -0.58 -13.31 2.78 -152.89 -0.43 -13.74 16 21 C -0.23 -5.81 10.34 -15.06 -0.16 -5.96 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C 0.00 0.11 5.43 -17.43 -0.09 0.01 16 24 N -0.91 -23.65 10.18 55.49 0.57 -23.09 16 25 Si 0.91 20.54 29.56 -169.99 -5.02 15.51 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 28 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.38 5.56 -51.93 -0.29 1.09 16 31 H 0.07 0.71 8.12 -51.93 -0.42 0.28 16 32 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 33 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.14 1.96 7.46 -52.49 -0.39 1.57 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.07 1.36 7.14 -51.93 -0.37 0.98 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.91 7.84 -51.92 -0.41 0.50 16 39 H 0.05 0.85 7.83 -51.93 -0.41 0.45 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 1.12 5.18 -51.93 -0.27 0.85 16 42 H 0.09 2.07 7.23 -51.93 -0.38 1.70 16 43 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -27.19 352.11 -10.43 -37.63 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.80 Total: 4.24 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -3.24 Total: -1.39 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.25 Total: -47.96 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.19 -10.43 -37.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029451237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.726 kcal (2) G-P(sol) polarization free energy of solvation -27.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds