Wall clock time and date at job start Tue Mar 31 2020 17:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99818 * 2 1 4 4 H 1.48495 * 109.47398 * 274.99200 * 3 2 1 5 5 H 1.48500 * 109.46962 * 34.99210 * 3 2 1 6 6 H 1.48498 * 109.47073 * 154.99027 * 3 2 1 7 7 C 1.38811 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99530 * 174.87280 * 7 2 1 9 9 N 1.36926 * 119.99786 * 354.59301 * 7 2 1 10 10 C 1.47067 * 136.06128 * 6.04691 * 9 7 2 11 11 C 1.53755 * 87.89088 * 152.96337 * 10 9 7 12 12 C 1.47073 * 136.05615 * 186.41909 * 9 7 2 13 13 H 1.08993 * 113.46943 * 92.24382 * 12 9 7 14 14 C 1.53003 * 113.46665 * 321.86091 * 12 9 7 15 15 N 1.46502 * 109.46741 * 74.50588 * 14 12 9 16 16 C 1.34777 * 119.99718 * 180.02562 * 15 14 12 17 17 O 1.21281 * 119.99967 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99906 * 180.02562 * 16 15 14 19 19 H 1.08996 * 115.55115 * 34.33003 * 18 16 15 20 20 C 1.53001 * 117.50012 * 248.62088 * 18 16 15 21 21 C 1.52998 * 60.00188 * 252.50764 * 20 18 16 22 22 H 1.09003 * 117.49995 * 107.48040 * 21 20 18 23 23 C 1.50698 * 117.52151 * 252.51887 * 21 20 18 24 24 C 1.38238 * 119.98687 * 8.34768 * 23 21 20 25 25 C 1.38211 * 120.01509 * 179.72627 * 24 23 21 26 26 C 1.38357 * 119.98781 * 0.55281 * 25 24 23 27 27 Cl 1.73594 * 120.01541 * 179.74424 * 26 25 24 28 28 C 1.38359 * 119.96959 * 359.72696 * 26 25 24 29 29 C 1.38215 * 119.98441 * 359.97438 * 28 26 25 30 30 H 0.97000 * 120.00621 * 359.97438 * 1 2 3 31 31 H 1.09007 * 113.46431 * 267.69808 * 10 9 7 32 32 H 1.08993 * 113.46580 * 38.13099 * 10 9 7 33 33 H 1.08999 * 114.39318 * 272.68088 * 11 10 9 34 34 H 1.09001 * 114.26767 * 139.79444 * 11 10 9 35 35 H 1.08994 * 109.47492 * 194.50815 * 14 12 9 36 36 H 1.09006 * 109.47021 * 314.50979 * 14 12 9 37 37 H 0.96994 * 120.00253 * 359.97438 * 15 14 12 38 38 H 1.08996 * 117.49634 * 359.97438 * 20 18 16 39 39 H 1.08999 * 117.50052 * 145.02172 * 20 18 16 40 40 H 1.08004 * 119.99254 * 0.02562 * 24 23 21 41 41 H 1.08000 * 120.00924 * 180.27239 * 25 24 23 42 42 H 1.07994 * 120.00421 * 180.02562 * 28 26 25 43 43 H 1.08002 * 119.98822 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1075 -1.3947 5 1 1.5043 2.6199 0.8029 6 1 3.5964 1.4121 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0870 -1.2038 -0.0841 9 7 1.3302 -2.3853 0.1107 10 6 -0.0814 -2.7970 0.1377 11 6 0.3635 -4.1573 -0.4242 12 6 1.6900 -3.8033 0.2623 13 1 1.7427 -4.1291 1.3010 14 6 2.9227 -4.2092 -0.5482 15 7 4.1274 -3.6848 0.0999 16 6 5.3396 -3.9193 -0.4406 17 8 5.4330 -4.5647 -1.4631 18 6 6.5789 -3.3804 0.2263 19 1 6.5502 -3.3476 1.3154 20 6 7.3419 -2.2673 -0.4946 21 6 7.9250 -3.6805 -0.4362 22 1 7.9141 -4.2679 -1.3544 23 6 9.1096 -3.9083 0.4670 24 6 9.5215 -2.9109 1.3311 25 6 10.6044 -3.1212 2.1638 26 6 11.2834 -4.3260 2.1243 27 17 12.6477 -4.5884 3.1650 28 6 10.8743 -5.3218 1.2551 29 6 9.7874 -5.1125 0.4273 30 1 -0.4851 0.8400 0.0004 31 1 -0.4966 -2.8577 1.1438 32 1 -0.7124 -2.2287 -0.5456 33 1 0.4202 -4.1982 -1.5119 34 1 -0.1517 -5.0127 0.0129 35 1 2.9818 -5.2963 -0.5999 36 1 2.8454 -3.8011 -1.5560 37 1 4.0526 -3.1683 0.9175 38 1 6.9476 -1.9250 -1.4514 39 1 7.8152 -1.5018 0.1202 40 1 8.9939 -1.9689 1.3590 41 1 10.9233 -2.3435 2.8420 42 1 11.4036 -6.2626 1.2241 43 1 9.4678 -5.8898 -0.2509 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038811368.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:13 Heat of formation + Delta-G solvation = 60.540281 kcal Electronic energy + Delta-G solvation = -25199.218501 eV Core-core repulsion = 21465.691971 eV Total energy + Delta-G solvation = -3733.526529 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.119 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.35761 -39.31562 -38.21498 -37.03121 -36.08814 -34.04554 -32.26224 -31.43121 -30.71661 -28.24072 -27.80920 -24.39929 -23.99729 -23.50749 -22.90569 -21.73205 -20.70537 -19.95465 -19.19877 -17.82584 -17.27734 -16.54251 -15.91229 -15.65753 -15.33147 -15.32128 -14.87201 -14.48330 -14.17367 -13.86936 -13.85155 -13.79773 -13.38845 -12.99190 -12.76150 -12.28072 -12.10620 -11.98763 -11.91790 -11.59861 -11.52632 -11.12476 -11.11654 -11.01909 -10.85132 -10.74147 -10.59770 -10.55980 -10.04250 -9.89879 -9.68500 -9.37593 -9.24086 -8.86272 -8.73728 -8.59339 -6.93577 -5.82901 -3.14683 0.75560 0.96198 1.81175 2.68819 3.16571 3.34029 3.38156 3.41388 3.49239 3.89286 4.33807 4.39617 4.44736 4.54865 4.63445 4.75543 4.92682 4.99334 5.11247 5.16855 5.19755 5.34874 5.37725 5.49235 5.52578 5.66139 5.69758 5.80732 5.85200 5.88366 5.90701 5.99540 6.06907 6.28028 6.28384 6.36907 6.45497 6.56171 6.68424 6.85969 7.19424 7.33884 7.53604 7.87258 7.92264 8.52183 8.97841 9.65261 10.58969 11.34819 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.002365 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.725039 B =11838.461253 C =12940.375998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.216 4.216 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.154 3.846 11 C -0.162 4.162 12 C 0.126 3.874 13 H 0.048 0.952 14 C 0.122 3.878 15 N -0.707 5.707 16 C 0.539 3.461 17 O -0.553 6.553 18 C -0.172 4.172 19 H 0.124 0.876 20 C -0.142 4.142 21 C -0.091 4.091 22 H 0.129 0.871 23 C -0.042 4.042 24 C -0.108 4.108 25 C -0.107 4.107 26 C -0.041 4.041 27 Cl -0.076 7.076 28 C -0.108 4.108 29 C -0.097 4.097 30 H 0.254 0.746 31 H 0.026 0.974 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.405 0.595 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.109 -9.407 4.116 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.343 4.343 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.028 3.972 11 C -0.201 4.201 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.356 5.356 16 C 0.325 3.675 17 O -0.432 6.432 18 C -0.193 4.193 19 H 0.142 0.858 20 C -0.179 4.179 21 C -0.110 4.110 22 H 0.147 0.853 23 C -0.042 4.042 24 C -0.126 4.126 25 C -0.125 4.125 26 C -0.067 4.067 27 Cl -0.047 7.047 28 C -0.127 4.127 29 C -0.116 4.116 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.239 0.761 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 19.292 -9.511 3.463 21.786 hybrid contribution 0.451 1.232 0.767 1.520 sum 19.743 -8.279 4.230 21.823 Atomic orbital electron populations 1.69843 1.05054 1.25362 1.55997 1.24822 0.95635 0.97471 1.02409 0.86193 0.78710 0.83850 0.77585 1.21615 1.21648 1.20585 1.18854 0.90590 0.81417 1.43436 0.90088 1.45685 1.02576 1.00027 1.84442 1.22032 0.88647 0.89078 0.97436 1.23722 0.97014 0.98935 1.00418 1.22417 0.91924 0.87653 0.96140 0.93472 1.21820 0.83363 0.97306 0.97805 1.45891 1.05674 1.54913 1.29139 1.19487 0.83975 0.79782 0.84283 1.90660 1.86914 1.41024 1.24556 1.22358 0.91076 1.05604 1.00243 0.85806 1.23145 1.01012 0.90957 1.02771 1.21081 0.89521 1.00388 0.99980 0.85284 1.19280 0.95264 0.93829 0.95818 1.21103 0.96521 0.99602 0.95368 1.21039 0.95697 0.95990 0.99800 1.20952 0.92561 0.96541 0.96686 1.98370 1.43478 1.96687 1.66153 1.21046 0.97421 0.98688 0.95508 1.20997 0.94645 0.97023 0.98903 0.93642 0.95578 0.91281 0.90214 0.92341 0.92272 0.91134 0.76070 0.87356 0.87400 0.84667 0.84863 0.84870 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.51 11.61 55.49 0.64 -25.87 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 21.40 29.56 -169.99 -5.02 16.38 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.22 -5.64 10.54 -15.06 -0.16 -5.80 16 8 H 0.08 2.03 7.61 -52.49 -0.40 1.63 16 9 N -0.60 -14.34 3.65 -176.82 -0.64 -14.98 16 10 C 0.15 3.46 7.33 -8.37 -0.06 3.40 16 11 C -0.16 -2.88 8.04 -26.08 -0.21 -3.09 16 12 C 0.13 2.37 4.10 -72.39 -0.30 2.08 16 13 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 14 C 0.12 2.15 5.52 -4.04 -0.02 2.12 16 15 N -0.71 -11.62 5.33 -60.29 -0.32 -11.94 16 16 C 0.54 8.67 7.61 -10.99 -0.08 8.59 16 17 O -0.55 -10.57 16.26 5.56 0.09 -10.48 16 18 C -0.17 -2.10 5.82 -91.77 -0.53 -2.64 16 19 H 0.12 1.32 8.14 -51.93 -0.42 0.89 16 20 C -0.14 -1.55 9.56 -26.73 -0.26 -1.80 16 21 C -0.09 -1.00 5.55 -91.77 -0.51 -1.51 16 22 H 0.13 1.55 7.67 -51.93 -0.40 1.15 16 23 C -0.04 -0.41 5.61 -104.62 -0.59 -0.99 16 24 C -0.11 -0.96 9.30 -39.59 -0.37 -1.33 16 25 C -0.11 -0.93 9.83 -39.55 -0.39 -1.31 16 26 C -0.04 -0.37 6.32 -39.49 -0.25 -0.62 16 27 Cl -0.08 -0.65 28.96 -51.86 -1.50 -2.15 16 28 C -0.11 -0.93 9.83 -39.55 -0.39 -1.32 16 29 C -0.10 -0.89 9.74 -39.59 -0.39 -1.27 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.74 7.29 -51.93 -0.38 1.36 16 33 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.40 6.36 8.47 -40.82 -0.35 6.02 16 38 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.11 0.95 6.17 -51.93 -0.32 0.63 16 40 H 0.14 1.02 6.02 -52.48 -0.32 0.71 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 377.72 15.07 5.69 5.69 Total: -1.00 -31.18 377.72 -11.60 -42.78 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.94 Total: 6.36 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -4.60 Total: -5.79 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.32 Total: -52.79 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.18 -11.60 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038811368.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.324 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds