Wall clock time and date at job start Tue Mar 31 2020 18:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47176 * 2 1 4 4 H 1.09001 * 109.47553 * 54.99636 * 3 2 1 5 5 F 1.39907 * 109.47354 * 294.99676 * 3 2 1 6 6 C 1.50700 * 109.47126 * 175.00067 * 3 2 1 7 7 O 1.21276 * 120.00212 * 44.99876 * 6 3 2 8 8 N 1.34784 * 119.99584 * 224.99721 * 6 3 2 9 9 C 1.46503 * 119.99386 * 179.97438 * 8 6 3 10 10 C 1.52999 * 109.46711 * 180.02562 * 9 8 6 11 11 O 1.42900 * 113.28648 * 313.06998 * 10 9 8 12 12 C 1.53500 * 114.20754 * 179.97438 * 10 9 8 13 13 N 1.47060 * 87.99065 * 220.34841 * 12 10 9 14 14 C 1.34777 * 136.05953 * 207.08941 * 13 12 10 15 15 O 1.21274 * 120.00135 * 0.27285 * 14 13 12 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.46851 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99843 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00031 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99637 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99688 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00458 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47358 * 89.99657 * 22 20 18 24 24 H 1.48498 * 109.47273 * 210.00381 * 22 20 18 25 25 H 1.48505 * 109.46671 * 329.99771 * 22 20 18 26 26 C 1.47067 * 87.88230 * 27.34173 * 13 12 10 27 27 H 1.09005 * 109.46934 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46996 * 300.00151 * 1 2 3 29 29 H 1.09001 * 109.46775 * 60.00134 * 1 2 3 30 30 H 1.09001 * 109.46996 * 239.99849 * 2 1 3 31 31 H 1.09001 * 109.46775 * 119.99866 * 2 1 3 32 32 H 0.96996 * 120.00219 * 0.02562 * 8 6 3 33 33 H 1.08998 * 109.47011 * 60.00444 * 9 8 6 34 34 H 1.08993 * 109.47584 * 300.00264 * 9 8 6 35 35 H 0.96697 * 113.99686 * 46.92930 * 11 10 9 36 36 H 1.09004 * 113.46455 * 105.56615 * 12 10 9 37 37 H 1.08997 * 113.52171 * 335.14326 * 12 10 9 38 38 H 1.09000 * 109.47161 * 299.99737 * 16 14 13 39 39 H 1.09001 * 109.46740 * 59.99879 * 16 14 13 40 40 H 0.97002 * 120.00245 * 180.02562 * 21 20 18 41 41 H 1.09000 * 113.47067 * 87.44293 * 26 13 12 42 42 H 1.09009 * 113.47132 * 217.87779 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 9 1.6700 2.0680 -1.1955 6 6 3.5419 1.4442 0.1238 7 8 4.2064 0.6810 -0.5446 8 7 4.1467 2.2941 0.9774 9 6 5.6067 2.2954 1.0982 10 6 6.0323 3.3449 2.1269 11 8 5.3870 4.6071 1.9464 12 6 7.5496 3.4381 2.3402 13 7 7.2857 3.5938 3.7785 14 6 7.9107 4.1728 4.8228 15 8 8.9666 4.7455 4.6559 16 6 7.2942 4.1142 6.1967 17 16 8.3646 4.9750 7.3755 18 6 7.4303 4.7566 8.8532 19 1 6.4946 4.2180 8.8259 20 6 7.8963 5.2778 10.0523 21 7 7.1980 5.1151 11.1562 22 14 9.5136 6.2112 10.0993 23 1 9.2596 7.6542 9.8574 24 1 10.1475 6.0366 11.4308 25 1 10.4196 5.6848 9.0470 26 6 6.0426 2.8341 3.5771 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6152 2.9043 1.5123 33 1 6.0510 2.5326 0.1315 34 1 5.9455 1.3114 1.4221 35 1 4.4314 4.5446 1.8126 36 1 7.9988 4.3200 1.8833 37 1 8.0808 2.5189 2.0933 38 1 6.3156 4.5940 6.1766 39 1 7.1824 3.0735 6.5007 40 1 7.5234 5.4796 11.9942 41 1 6.1756 1.7551 3.6563 42 1 5.2078 3.2013 4.1741 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044789632.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:25 Heat of formation + Delta-G solvation = -127.692636 kcal Electronic energy + Delta-G solvation = -25821.645195 eV Core-core repulsion = 21651.230756 eV Total energy + Delta-G solvation = -4170.414440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.43528 -41.18973 -39.97946 -38.23191 -35.92789 -34.92293 -34.56963 -32.47594 -31.06167 -29.57969 -28.04436 -26.47603 -25.89331 -25.52498 -22.71537 -21.38070 -21.18349 -19.53288 -18.79480 -17.77498 -17.66481 -17.06555 -16.75998 -16.52165 -16.08062 -15.82590 -15.68589 -15.27144 -14.99563 -14.81438 -14.55024 -14.27063 -14.14194 -13.77835 -13.70380 -13.48740 -13.24576 -12.88634 -12.88439 -12.76869 -12.49319 -12.27791 -12.08772 -11.68399 -11.50924 -11.41242 -11.27557 -11.03511 -10.66765 -10.58107 -10.39339 -9.89471 -9.86268 -9.57917 -9.03892 -8.82077 -8.54730 -6.96572 -6.32525 -4.04793 1.78084 2.18148 2.48049 2.85437 3.03729 3.27741 3.31079 3.48175 3.53037 3.59078 3.76953 3.87807 4.00207 4.05967 4.27811 4.29165 4.36502 4.63108 4.73551 4.84064 4.94049 4.98051 5.04210 5.06118 5.06614 5.08791 5.14042 5.34292 5.35701 5.41303 5.48398 5.55365 5.64892 5.70856 5.77008 5.94689 6.57688 6.97589 7.37963 7.63450 7.90430 8.33525 8.37308 9.13528 10.76591 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.021120 B = 0.002048 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.431850 B =13665.378838 C =14545.504396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.142 4.142 3 C 0.084 3.916 4 H 0.102 0.898 5 F -0.188 7.188 6 C 0.495 3.505 7 O -0.513 6.513 8 N -0.723 5.723 9 C 0.105 3.895 10 C 0.078 3.922 11 O -0.517 6.517 12 C 0.123 3.877 13 N -0.644 5.644 14 C 0.565 3.435 15 O -0.512 6.512 16 C -0.114 4.114 17 S -0.140 6.140 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.266 1.266 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.076 3.924 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.401 0.599 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.375 0.625 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.271 0.729 41 H 0.097 0.903 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.682 -10.083 -23.492 28.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.180 4.180 3 C 0.044 3.956 4 H 0.120 0.880 5 F -0.169 7.169 6 C 0.279 3.721 7 O -0.386 6.386 8 N -0.378 5.378 9 C -0.019 4.019 10 C 0.035 3.965 11 O -0.322 6.322 12 C -0.001 4.001 13 N -0.382 5.382 14 C 0.355 3.645 15 O -0.386 6.386 16 C -0.265 4.265 17 S 0.086 5.914 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.682 3.318 23 H -0.191 1.191 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.048 4.048 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.236 0.764 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.223 0.777 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.889 -9.395 -23.759 27.773 hybrid contribution -1.537 -0.111 0.745 1.712 sum -12.426 -9.506 -23.014 27.828 Atomic orbital electron populations 1.21785 0.93877 1.02904 1.02642 1.22012 0.97552 0.93217 1.05209 1.21638 0.91389 0.96716 0.85821 0.87978 1.92909 1.91955 1.83849 1.48153 1.21026 0.90571 0.80599 0.79903 1.90770 1.66103 1.38700 1.43076 1.45972 1.08039 1.40132 1.43681 1.21915 0.79952 0.99684 1.00392 1.22805 0.95947 0.84474 0.93269 1.86711 1.24754 1.26283 1.94435 1.22888 0.92324 1.03552 0.81365 1.49314 1.24898 1.55830 1.08141 1.19867 0.83712 0.76960 0.84004 1.90723 1.21779 1.42263 1.83841 1.23202 1.04015 1.05542 0.93722 1.84826 1.31351 1.72709 1.02500 1.22288 1.10200 1.42379 0.92031 0.89395 1.24712 0.97412 0.94828 0.94352 1.69935 1.38297 1.44199 0.99181 0.86731 0.84324 0.81424 0.79363 1.19146 1.19877 1.15930 1.23802 0.88708 0.97510 0.94787 0.91529 0.92158 0.91856 0.89355 0.89597 0.76366 0.89372 0.89045 0.77659 0.89033 0.88065 0.88561 0.88587 0.91896 0.88552 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.83 37.16 0.37 -0.21 16 2 C -0.14 -0.67 5.41 -26.73 -0.14 -0.81 16 3 C 0.08 0.41 3.77 -27.89 -0.11 0.31 16 4 H 0.10 0.16 7.99 -51.93 -0.42 -0.25 16 5 F -0.19 -1.43 16.75 2.25 0.04 -1.39 16 6 C 0.50 3.39 7.17 -10.98 -0.08 3.32 16 7 O -0.51 -5.62 16.61 5.56 0.09 -5.52 16 8 N -0.72 -3.14 5.34 -60.30 -0.32 -3.46 16 9 C 0.10 0.57 5.42 -4.04 -0.02 0.55 16 10 C 0.08 0.54 1.74 -89.97 -0.16 0.39 16 11 O -0.52 -4.13 13.57 -35.23 -0.48 -4.61 16 12 C 0.12 1.20 8.04 -8.52 -0.07 1.13 16 13 N -0.64 -8.51 3.69 -185.06 -0.68 -9.19 16 14 C 0.56 10.47 8.10 -10.98 -0.09 10.38 16 15 O -0.51 -11.54 16.64 5.56 0.09 -11.45 16 16 C -0.11 -2.24 5.98 36.01 0.22 -2.03 16 17 S -0.14 -3.57 18.55 -107.50 -1.99 -5.57 16 18 C -0.52 -14.93 10.04 30.94 0.31 -14.62 16 19 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.33 13.97 55.49 0.78 -25.56 16 22 Si 0.86 21.72 27.74 -169.99 -4.72 17.01 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 26 C 0.08 0.62 7.86 -8.38 -0.07 0.55 16 27 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.27 7.94 -51.93 -0.41 -0.14 16 30 H 0.09 0.55 8.05 -51.93 -0.42 0.13 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.40 0.57 6.84 -40.82 -0.28 0.30 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.47 7.89 -51.93 -0.41 0.06 16 35 H 0.38 1.33 7.21 45.56 0.33 1.65 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.10 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 39 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.10 0.59 7.93 -51.93 -0.41 0.18 16 42 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -38.96 376.07 -6.86 -45.81 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -5.40 Total: -3.38 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 0.07 Total: 1.64 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.23 Total: -38.21 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.29 Total: -21.58 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.72 Total: 17.01 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.96 -6.86 -45.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044789632.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.880 kcal (2) G-P(sol) polarization free energy of solvation -38.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds