Wall clock time and date at job start Tue Mar 31 2020 18:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47176 * 2 1 4 4 H 1.09001 * 109.47553 * 54.99636 * 3 2 1 5 5 F 1.39907 * 109.47354 * 294.99676 * 3 2 1 6 6 C 1.50700 * 109.47126 * 175.00067 * 3 2 1 7 7 O 1.21276 * 120.00212 * 44.99876 * 6 3 2 8 8 N 1.34784 * 119.99584 * 224.99721 * 6 3 2 9 9 C 1.46503 * 119.99386 * 179.97438 * 8 6 3 10 10 C 1.52999 * 109.46711 * 180.02562 * 9 8 6 11 11 O 1.42900 * 113.28648 * 313.06998 * 10 9 8 12 12 C 1.53500 * 114.20754 * 179.97438 * 10 9 8 13 13 N 1.47060 * 87.99065 * 220.34841 * 12 10 9 14 14 C 1.34777 * 136.05953 * 207.08941 * 13 12 10 15 15 O 1.21274 * 120.00135 * 0.27285 * 14 13 12 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.46851 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99843 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00031 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99637 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99688 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00458 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47358 * 89.99657 * 22 20 18 24 24 H 1.48498 * 109.47273 * 210.00381 * 22 20 18 25 25 H 1.48505 * 109.46671 * 329.99771 * 22 20 18 26 26 C 1.47067 * 87.88230 * 27.34173 * 13 12 10 27 27 H 1.09005 * 109.46934 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46996 * 300.00151 * 1 2 3 29 29 H 1.09001 * 109.46775 * 60.00134 * 1 2 3 30 30 H 1.09001 * 109.46996 * 239.99849 * 2 1 3 31 31 H 1.09001 * 109.46775 * 119.99866 * 2 1 3 32 32 H 0.96996 * 120.00219 * 0.02562 * 8 6 3 33 33 H 1.08998 * 109.47011 * 60.00444 * 9 8 6 34 34 H 1.08993 * 109.47584 * 300.00264 * 9 8 6 35 35 H 0.96697 * 113.99686 * 46.92930 * 11 10 9 36 36 H 1.09004 * 113.46455 * 105.56615 * 12 10 9 37 37 H 1.08997 * 113.52171 * 335.14326 * 12 10 9 38 38 H 1.09000 * 109.47161 * 299.99737 * 16 14 13 39 39 H 1.09001 * 109.46740 * 59.99879 * 16 14 13 40 40 H 0.97002 * 120.00245 * 180.02562 * 21 20 18 41 41 H 1.09000 * 113.47067 * 87.44293 * 26 13 12 42 42 H 1.09009 * 113.47132 * 217.87779 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 9 1.6700 2.0680 -1.1955 6 6 3.5419 1.4442 0.1238 7 8 4.2064 0.6810 -0.5446 8 7 4.1467 2.2941 0.9774 9 6 5.6067 2.2954 1.0982 10 6 6.0323 3.3449 2.1269 11 8 5.3870 4.6071 1.9464 12 6 7.5496 3.4381 2.3402 13 7 7.2857 3.5938 3.7785 14 6 7.9107 4.1728 4.8228 15 8 8.9666 4.7455 4.6559 16 6 7.2942 4.1142 6.1967 17 16 8.3646 4.9750 7.3755 18 6 7.4303 4.7566 8.8532 19 1 6.4946 4.2180 8.8259 20 6 7.8963 5.2778 10.0523 21 7 7.1980 5.1151 11.1562 22 14 9.5136 6.2112 10.0993 23 1 9.2596 7.6542 9.8574 24 1 10.1475 6.0366 11.4308 25 1 10.4196 5.6848 9.0470 26 6 6.0426 2.8341 3.5771 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6152 2.9043 1.5123 33 1 6.0510 2.5326 0.1315 34 1 5.9455 1.3114 1.4221 35 1 4.4314 4.5446 1.8126 36 1 7.9988 4.3200 1.8833 37 1 8.0808 2.5189 2.0933 38 1 6.3156 4.5940 6.1766 39 1 7.1824 3.0735 6.5007 40 1 7.5234 5.4796 11.9942 41 1 6.1756 1.7551 3.6563 42 1 5.2078 3.2013 4.1741 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044789632.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:24 Heat of formation + Delta-G solvation = -159.698196 kcal Electronic energy + Delta-G solvation = -25823.033060 eV Core-core repulsion = 21651.230756 eV Total energy + Delta-G solvation = -4171.802305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.91655 -41.97960 -40.65624 -39.44627 -36.73674 -35.47187 -34.92935 -34.69056 -32.22988 -30.50025 -28.74917 -27.87601 -27.20467 -26.49810 -23.13569 -22.03745 -21.72968 -20.65856 -19.74455 -19.24198 -18.18316 -18.14622 -17.38705 -17.30987 -17.13308 -16.90005 -16.75337 -16.42457 -16.07635 -15.68287 -15.53891 -15.11609 -15.03826 -14.90336 -14.65826 -14.52392 -14.14323 -13.91089 -13.63651 -13.53305 -13.35661 -13.26086 -13.03443 -12.99872 -12.86093 -12.65870 -12.13392 -11.99279 -11.88313 -11.81968 -11.35591 -11.18924 -10.98165 -10.87551 -10.57076 -10.33079 -9.88422 -9.03755 -8.53368 -6.24953 0.90750 1.26651 1.30212 1.39981 1.46439 1.49695 1.74747 1.90813 2.23417 2.62666 2.71797 2.84821 2.98399 3.33377 3.42737 3.51677 3.56069 3.72649 3.93269 3.95790 4.14576 4.31212 4.37299 4.42575 4.46340 4.48086 4.52899 4.59934 4.62997 4.75715 4.78508 4.79990 5.06446 5.10267 5.18737 5.37269 5.69089 6.09307 6.20270 6.49050 6.59537 6.91752 6.94756 6.98677 8.58797 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.021120 B = 0.002048 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.431850 B =13665.378838 C =14545.504396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.142 4.142 3 C 0.082 3.918 4 H 0.144 0.856 5 F -0.204 7.204 6 C 0.495 3.505 7 O -0.560 6.560 8 N -0.707 5.707 9 C 0.114 3.886 10 C 0.105 3.895 11 O -0.539 6.539 12 C 0.110 3.890 13 N -0.646 5.646 14 C 0.563 3.437 15 O -0.567 6.567 16 C -0.098 4.098 17 S -0.178 6.178 18 C -0.527 4.527 19 H 0.064 0.936 20 C 0.047 3.953 21 N -0.914 5.914 22 Si 0.913 3.087 23 H -0.263 1.263 24 H -0.257 1.257 25 H -0.239 1.239 26 C 0.073 3.927 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.417 0.583 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.395 0.605 36 H 0.073 0.927 37 H 0.131 0.869 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.278 0.722 41 H 0.127 0.873 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.759 -10.649 -24.286 30.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.180 4.180 3 C 0.043 3.957 4 H 0.162 0.838 5 F -0.185 7.185 6 C 0.279 3.721 7 O -0.437 6.437 8 N -0.362 5.362 9 C -0.010 4.010 10 C 0.062 3.938 11 O -0.347 6.347 12 C -0.012 4.012 13 N -0.381 5.381 14 C 0.352 3.648 15 O -0.445 6.445 16 C -0.248 4.248 17 S 0.049 5.951 18 C -0.674 4.674 19 H 0.083 0.917 20 C -0.159 4.159 21 N -0.552 5.552 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.182 1.182 25 H -0.163 1.163 26 C -0.049 4.049 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.256 0.744 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.246 0.754 36 H 0.091 0.909 37 H 0.149 0.851 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.087 0.913 41 H 0.145 0.855 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.051 -9.972 -24.569 29.126 hybrid contribution -1.345 -0.013 0.842 1.587 sum -13.396 -9.985 -23.727 29.019 Atomic orbital electron populations 1.21779 0.93044 1.03241 1.02929 1.22009 0.98210 0.93130 1.04664 1.21887 0.90200 0.97290 0.86328 0.83832 1.92875 1.91979 1.84152 1.49535 1.21373 0.91285 0.80036 0.79360 1.90756 1.67191 1.40738 1.45015 1.45823 1.07763 1.39599 1.43057 1.21768 0.80472 0.99404 0.99403 1.22429 0.93851 0.84472 0.93070 1.86682 1.26679 1.26937 1.94429 1.23293 0.94869 1.04212 0.78872 1.49265 1.26116 1.54416 1.08351 1.19506 0.83292 0.77470 0.84558 1.90694 1.24041 1.45107 1.84687 1.23128 1.02989 1.05553 0.93167 1.84789 1.33205 1.74255 1.02871 1.22409 1.09649 1.41710 0.93680 0.91739 1.25535 1.00494 0.95713 0.94150 1.70005 1.39975 1.45356 0.99889 0.85891 0.80624 0.80162 0.79855 1.18730 1.18167 1.16260 1.24231 0.86688 0.98723 0.95282 0.91247 0.90617 0.92764 0.91625 0.88507 0.74386 0.90001 0.87943 0.75354 0.90862 0.85137 0.87255 0.86928 0.91301 0.85521 0.88251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.83 71.98 0.71 -0.15 16 2 C -0.14 -1.12 5.41 30.59 0.17 -0.95 16 3 C 0.08 0.62 3.77 29.85 0.11 0.73 16 4 H 0.14 -0.14 7.99 -2.39 -0.02 -0.16 16 5 F -0.20 -2.82 16.75 44.97 0.75 -2.06 16 6 C 0.49 5.67 7.17 87.66 0.63 6.29 16 7 O -0.56 -11.65 16.61 -3.02 -0.05 -11.70 16 8 N -0.71 -3.75 5.34 -463.06 -2.47 -6.22 16 9 C 0.11 0.87 5.42 86.38 0.47 1.34 16 10 C 0.10 1.13 1.74 -10.37 -0.02 1.11 16 11 O -0.54 -7.04 13.57 -148.98 -2.02 -9.06 16 12 C 0.11 1.92 8.04 83.17 0.67 2.58 16 13 N -0.65 -15.67 3.69 -858.27 -3.16 -18.84 16 14 C 0.56 20.32 8.10 87.66 0.71 21.03 16 15 O -0.57 -25.68 16.64 -3.01 -0.05 -25.73 16 16 C -0.10 -3.73 5.98 71.24 0.43 -3.30 16 17 S -0.18 -9.07 18.55 -56.49 -1.05 -10.12 16 18 C -0.53 -30.45 10.04 67.96 0.68 -29.76 16 19 H 0.06 3.90 8.03 -2.91 -0.02 3.87 16 20 C 0.05 2.73 5.50 84.86 0.47 3.19 16 21 N -0.91 -55.07 13.97 21.65 0.30 -54.77 16 22 Si 0.91 44.90 27.74 68.60 1.90 46.81 16 23 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.24 -11.79 6.74 99.48 0.67 -11.12 16 26 C 0.07 0.91 7.86 83.26 0.65 1.56 16 27 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 28 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.05 0.41 7.94 -2.39 -0.02 0.39 16 30 H 0.06 0.82 8.05 -2.39 -0.02 0.80 16 31 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.42 -0.56 6.84 -92.71 -0.63 -1.20 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.10 0.66 7.89 -2.39 -0.02 0.64 16 35 H 0.39 1.37 7.21 -74.06 -0.53 0.84 16 36 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.13 1.53 8.10 -2.39 -0.02 1.51 16 38 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 39 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 40 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 41 H 0.13 0.93 7.93 -2.39 -0.02 0.92 16 42 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -87.40 376.07 -0.32 -87.72 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -0.15 Total: 0.29 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 5.67 Total: 3.67 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -5.33 Total: -79.83 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -2.12 Total: -46.49 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.75 Total: -2.06 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.81 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.05 Total: -10.12 kcal Total: -87.40 -0.32 -87.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044789632.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.974 kcal (2) G-P(sol) polarization free energy of solvation -87.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds