Wall clock time and date at job start Tue Mar 31 2020 17:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38311 * 119.93589 * 2 1 4 4 C 1.38380 * 120.31393 * 179.97438 * 3 2 1 5 5 C 1.37933 * 120.18388 * 359.97438 * 4 3 2 6 6 C 1.39588 * 119.86873 * 0.02562 * 5 4 3 7 7 C 1.47768 * 120.15710 * 180.02562 * 6 5 4 8 8 O 1.21566 * 119.99628 * 221.53927 * 7 6 5 9 9 N 1.34771 * 120.00445 * 41.53509 * 7 6 5 10 10 C 1.46750 * 125.32457 * 354.79106 * 9 7 6 11 11 C 1.53931 * 106.71739 * 161.92202 * 10 9 7 12 12 H 1.09006 * 113.60122 * 151.16391 * 11 10 9 13 13 C 1.53960 * 109.25288 * 278.36011 * 11 10 9 14 14 N 1.46784 * 106.62671 * 138.18741 * 13 11 10 15 15 C 1.36938 * 125.33763 * 161.51593 * 14 13 11 16 16 H 1.08005 * 119.99823 * 6.02921 * 15 14 13 17 17 C 1.38808 * 119.99921 * 186.02242 * 15 14 13 18 18 N 1.31617 * 120.00162 * 7.44503 * 17 15 14 19 19 Si 1.86799 * 119.99927 * 187.43505 * 17 15 14 20 20 H 1.48508 * 109.46783 * 84.99788 * 19 17 15 21 21 H 1.48501 * 109.47349 * 204.99332 * 19 17 15 22 22 H 1.48494 * 109.47527 * 324.99739 * 19 17 15 23 23 C 1.46666 * 109.32178 * 341.48867 * 14 13 11 24 24 C 1.53730 * 107.94500 * 0.54109 * 23 14 13 25 25 H 1.09003 * 113.05483 * 140.00537 * 24 23 14 26 26 C 1.46637 * 125.33104 * 175.09329 * 9 7 6 27 27 C 1.38115 * 119.93312 * 180.27919 * 2 1 3 28 28 Cl 1.73602 * 120.09271 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.47186 * 89.99567 * 1 2 3 30 30 H 1.09000 * 109.47658 * 210.00497 * 1 2 3 31 31 H 1.09001 * 109.47038 * 330.00094 * 1 2 3 32 32 H 1.07998 * 119.84378 * 359.97438 * 3 2 1 33 33 H 1.08003 * 119.90377 * 179.97438 * 4 3 2 34 34 H 1.08006 * 120.06771 * 180.02562 * 5 4 3 35 35 H 1.09002 * 110.00584 * 281.23464 * 10 9 7 36 36 H 1.08996 * 110.01388 * 42.60500 * 10 9 7 37 37 H 1.08994 * 110.03131 * 257.48037 * 13 11 10 38 38 H 1.09003 * 110.02538 * 18.90514 * 13 11 10 39 39 H 0.96996 * 120.00195 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.77207 * 240.92280 * 23 14 13 41 41 H 1.09000 * 109.77477 * 120.16474 * 23 14 13 42 42 H 1.09001 * 109.76249 * 300.21118 * 26 9 7 43 43 H 1.08999 * 109.75898 * 60.93422 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1986 0.0000 4 6 3.5810 1.2077 0.0005 5 6 4.2823 0.0200 0.0016 6 6 3.5935 -1.1941 0.0016 7 6 4.3384 -2.4702 0.0033 8 8 3.9650 -3.3929 -0.6947 9 7 5.4318 -2.6113 0.7786 10 6 6.0469 -1.5469 1.5798 11 6 6.9437 -2.2391 2.6219 12 1 7.7984 -1.6372 2.9309 13 6 6.0779 -2.7075 3.8057 14 7 6.5556 -4.0463 4.1717 15 6 6.3198 -4.6723 5.3666 16 1 5.6600 -4.2199 6.0922 17 6 6.9287 -5.8882 5.6451 18 7 7.8430 -6.3686 4.8293 19 14 6.4506 -6.8426 7.1781 20 1 5.2514 -7.6705 6.8918 21 1 7.5751 -7.7238 7.5834 22 1 6.1451 -5.8925 8.2776 23 6 7.3246 -4.6088 3.0565 24 6 7.3489 -3.5680 1.9254 25 1 8.3151 -3.5040 1.4249 26 6 6.1965 -3.8509 0.9486 27 6 2.1962 -1.1969 -0.0058 28 17 1.3288 -2.7007 -0.0138 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6536 2.1318 -0.0004 33 1 4.1132 2.1475 0.0001 34 1 5.3623 0.0293 0.0024 35 1 6.6483 -0.8997 0.9413 36 1 5.2746 -0.9635 2.0810 37 1 6.1966 -2.0258 4.6478 38 1 5.0306 -2.7537 3.5069 39 1 8.2687 -7.2180 5.0242 40 1 6.8486 -5.5242 2.7051 41 1 8.3425 -4.8237 3.3818 42 1 5.5511 -4.6293 1.3556 43 1 6.5985 -4.1707 -0.0128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049123738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:34 Heat of formation + Delta-G solvation = 20.630685 kcal Electronic energy + Delta-G solvation = -26772.816997 eV Core-core repulsion = 23037.559858 eV Total energy + Delta-G solvation = -3735.257139 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.119 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.65369 -39.34524 -37.89522 -36.48329 -35.02283 -33.30152 -32.17680 -31.23204 -30.13119 -29.64942 -27.31559 -25.85128 -25.50875 -24.01825 -22.52581 -21.92383 -20.19853 -19.56941 -19.40202 -17.36409 -16.86845 -16.62501 -16.14246 -15.90090 -15.42460 -14.74082 -14.52151 -14.40416 -14.05728 -13.86953 -13.54584 -13.29489 -13.06172 -12.83819 -12.63973 -12.47015 -12.20684 -11.95210 -11.85562 -11.79753 -11.63691 -11.60023 -11.31050 -10.90343 -10.85321 -10.79923 -10.38150 -10.11609 -10.04301 -9.92469 -9.69710 -9.67095 -9.11531 -8.88061 -8.63578 -8.38628 -6.83134 -5.71360 -3.07986 0.63764 0.89952 2.05276 2.72759 3.05506 3.40539 3.45789 3.46250 3.46919 4.32292 4.40068 4.48307 4.55717 4.74876 4.86519 4.89146 4.99178 5.14405 5.19889 5.31600 5.34649 5.40831 5.45704 5.50528 5.60035 5.68787 5.76013 5.79681 5.85345 5.92187 5.96718 6.06828 6.11362 6.24984 6.31779 6.42065 6.52246 6.60291 6.68216 6.82572 7.43014 7.60912 7.66169 7.79141 8.24614 8.26639 9.20586 9.81722 10.45578 11.37653 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.016115 B = 0.003311 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.119068 B = 8455.876222 C = 8921.295406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.118 4.118 5 C -0.087 4.087 6 C -0.109 4.109 7 C 0.568 3.432 8 O -0.521 6.521 9 N -0.600 5.600 10 C 0.107 3.893 11 C -0.110 4.110 12 H 0.100 0.900 13 C 0.144 3.856 14 N -0.600 5.600 15 C -0.230 4.230 16 H 0.077 0.923 17 C -0.006 4.006 18 N -0.919 5.919 19 Si 0.911 3.089 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.181 3.819 24 C -0.121 4.121 25 H 0.090 0.910 26 C 0.119 3.881 27 C 0.005 3.995 28 Cl -0.040 7.040 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.017 0.983 39 H 0.253 0.747 40 H 0.034 0.966 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.283 17.837 -11.376 22.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.085 4.085 3 C -0.111 4.111 4 C -0.136 4.136 5 C -0.106 4.106 6 C -0.113 4.113 7 C 0.355 3.645 8 O -0.397 6.397 9 N -0.333 5.333 10 C -0.016 4.016 11 C -0.130 4.130 12 H 0.119 0.881 13 C 0.018 3.982 14 N -0.326 5.326 15 C -0.358 4.358 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.567 5.567 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.056 3.944 24 C -0.141 4.141 25 H 0.108 0.892 26 C -0.002 4.002 27 C -0.022 4.022 28 Cl -0.010 7.010 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.035 0.965 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.559 16.973 -11.679 22.310 hybrid contribution -0.209 -0.631 0.822 1.057 sum -8.767 16.342 -10.857 21.490 Atomic orbital electron populations 1.20881 0.89878 1.03717 1.03071 1.19746 0.97008 0.91099 1.00690 1.21156 0.94285 0.97081 0.98582 1.21167 0.94166 0.98200 1.00078 1.21471 1.00716 0.90777 0.97640 1.19797 0.92168 0.94514 1.04783 1.17692 0.79595 0.87063 0.80139 1.90823 1.66955 1.41108 1.40845 1.48125 1.27241 1.12895 1.45069 1.22143 0.96433 0.90267 0.92777 1.22956 0.98174 0.96254 0.95571 0.88137 1.21264 0.94907 0.88367 0.93684 1.44205 1.61747 1.12825 1.13859 1.19017 1.22477 1.01875 0.92457 0.90508 1.24795 0.98295 0.98413 0.98766 1.69927 1.28192 1.20715 1.37836 0.86146 0.77487 0.79897 0.82285 1.21553 1.21680 1.20715 1.21112 0.98148 0.91234 0.83940 1.23133 0.96786 0.97150 0.96986 0.89176 1.22024 0.92948 0.86261 0.98997 1.20845 0.91013 0.88153 1.02232 1.98407 1.75736 1.30654 1.96248 0.90517 0.90620 0.90884 0.84804 0.84763 0.84273 0.91751 0.90666 0.94646 0.96516 0.93689 0.94784 0.91542 0.90604 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.60 36.01 0.35 -0.61 16 2 C -0.08 -0.87 5.88 -104.64 -0.62 -1.49 16 3 C -0.09 -0.76 9.69 -39.50 -0.38 -1.14 16 4 C -0.12 -0.96 10.03 -39.64 -0.40 -1.36 16 5 C -0.09 -0.91 8.08 -39.19 -0.32 -1.23 16 6 C -0.11 -1.51 5.40 -104.94 -0.57 -2.08 16 7 C 0.57 9.61 7.12 -12.37 -0.09 9.52 16 8 O -0.52 -10.44 15.70 5.31 0.08 -10.36 16 9 N -0.60 -9.66 3.30 -173.52 -0.57 -10.24 16 10 C 0.11 1.41 4.44 -3.42 -0.02 1.40 16 11 C -0.11 -1.73 4.17 -88.35 -0.37 -2.10 16 12 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 13 C 0.14 2.90 6.48 -3.39 -0.02 2.87 16 14 N -0.60 -15.05 3.38 -171.84 -0.58 -15.63 16 15 C -0.23 -6.38 10.23 -15.06 -0.15 -6.54 16 16 H 0.08 2.07 7.84 -52.48 -0.41 1.66 16 17 C -0.01 -0.17 5.45 -17.43 -0.09 -0.27 16 18 N -0.92 -26.68 10.41 55.49 0.58 -26.10 16 19 Si 0.91 22.15 29.56 -169.99 -5.02 17.13 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.18 4.23 4.84 -3.57 -0.02 4.21 16 24 C -0.12 -2.12 4.02 -88.60 -0.36 -2.48 16 25 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 26 C 0.12 2.11 6.22 -3.61 -0.02 2.09 16 27 C 0.01 0.07 6.33 -39.07 -0.25 -0.17 16 28 Cl -0.04 -0.59 25.22 -51.86 -1.31 -1.90 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.67 6.91 -51.93 -0.36 0.31 16 31 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 34 H 0.14 1.23 5.75 -52.48 -0.30 0.93 16 35 H 0.06 0.66 6.90 -51.93 -0.36 0.30 16 36 H 0.08 0.94 6.89 -51.93 -0.36 0.58 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.02 0.36 7.71 -51.93 -0.40 -0.04 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.03 0.89 7.24 -51.93 -0.38 0.51 16 41 H 0.07 1.73 6.86 -51.93 -0.36 1.38 16 42 H 0.08 1.58 7.29 -51.93 -0.38 1.20 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -32.93 353.45 -10.63 -43.56 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -5.81 Total: -2.40 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -3.32 Total: 0.62 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.58 Total: -51.97 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.31 Total: -1.90 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.93 -10.63 -43.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049123738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.187 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds