Wall clock time and date at job start Tue Mar 31 2020 17:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99718 * 2 1 4 4 H 1.48501 * 109.47042 * 269.99953 * 3 2 1 5 5 H 1.48491 * 109.47226 * 30.00099 * 3 2 1 6 6 H 1.48501 * 109.46887 * 150.00283 * 3 2 1 7 7 C 1.38810 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99785 * 192.42548 * 7 2 1 9 9 N 1.36936 * 120.00002 * 12.42069 * 7 2 1 10 10 C 1.46885 * 120.46995 * 34.58612 * 9 7 2 11 11 C 1.53333 * 108.76012 * 124.43897 * 10 9 7 12 12 C 1.52672 * 109.11220 * 52.41232 * 11 10 9 13 13 C 1.53474 * 113.62474 * 170.86788 * 12 11 10 14 14 N 1.47670 * 85.98667 * 269.02460 * 13 12 11 15 15 C 1.34778 * 134.45466 * 155.67582 * 14 13 12 16 16 O 1.21560 * 119.99509 * 184.93503 * 15 14 13 17 17 C 1.47841 * 120.00321 * 4.93531 * 15 14 13 18 18 C 1.39601 * 120.13619 * 6.94625 * 17 15 14 19 19 C 1.37947 * 119.87416 * 179.97438 * 18 17 15 20 20 C 1.38357 * 120.16390 * 359.97438 * 19 18 17 21 21 C 1.38450 * 120.27952 * 0.02562 * 20 19 18 22 22 Cl 1.73601 * 119.93754 * 180.02562 * 21 20 19 23 23 C 1.38101 * 120.11589 * 359.78666 * 21 20 19 24 24 C 1.47658 * 91.08566 * 335.67975 * 14 13 12 25 25 C 1.52682 * 113.18105 * 302.40449 * 12 11 10 26 26 C 1.46897 * 120.46359 * 214.56296 * 9 7 2 27 27 H 0.97000 * 120.00568 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.58283 * 4.65672 * 10 9 7 29 29 H 1.08995 * 109.58457 * 244.22610 * 10 9 7 30 30 H 1.09003 * 109.53710 * 292.51957 * 11 10 9 31 31 H 1.08999 * 109.52745 * 172.29774 * 11 10 9 32 32 H 1.08998 * 113.79086 * 23.29365 * 13 12 11 33 33 H 1.08995 * 113.79576 * 154.75970 * 13 12 11 34 34 H 1.07993 * 120.06409 * 359.95550 * 18 17 15 35 35 H 1.08003 * 119.91221 * 180.02562 * 19 18 17 36 36 H 1.07996 * 119.85963 * 180.02562 * 20 19 18 37 37 H 1.08001 * 120.07443 * 180.23343 * 23 21 20 38 38 H 1.09002 * 113.79662 * 270.04871 * 24 14 13 39 39 H 1.09004 * 113.79360 * 138.58060 * 24 14 13 40 40 H 1.08996 * 109.53357 * 177.49487 * 25 12 11 41 41 H 1.09005 * 109.53037 * 297.71663 * 25 12 11 42 42 H 1.09003 * 109.58681 * 115.79167 * 26 9 7 43 43 H 1.08998 * 109.71474 * 355.41925 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0713 -1.2131 0.2007 9 7 1.3496 -2.3740 -0.2561 10 6 0.2321 -2.4066 -1.2088 11 6 0.5302 -3.4595 -2.2829 12 6 0.8736 -4.7830 -1.6037 13 6 0.9738 -5.9657 -2.5766 14 7 -0.4620 -6.1773 -2.3044 15 6 -1.4748 -6.7585 -2.9775 16 8 -2.6061 -6.7081 -2.5356 17 6 -1.2098 -7.4572 -4.2531 18 6 0.1026 -7.6432 -4.6909 19 6 0.3437 -8.2964 -5.8817 20 6 -0.7117 -8.7677 -6.6422 21 6 -2.0159 -8.5869 -6.2143 22 17 -3.3334 -9.1824 -7.1751 23 6 -2.2704 -7.9380 -5.0220 24 6 -0.3436 -5.4969 -0.9993 25 6 2.0573 -4.6773 -0.6451 26 6 1.7489 -3.6165 0.4182 27 1 -0.4851 0.8400 0.0004 28 1 0.1222 -1.4282 -1.6766 29 1 -0.6871 -2.6689 -0.6849 30 1 1.3740 -3.1319 -2.8902 31 1 -0.3467 -3.5919 -2.9166 32 1 1.1880 -5.6727 -3.6044 33 1 1.6125 -6.7744 -2.2215 34 1 0.9277 -7.2762 -4.0986 35 1 1.3589 -8.4410 -6.2208 36 1 -0.5173 -9.2788 -7.5735 37 1 -3.2879 -7.8006 -4.6870 38 1 -0.0964 -6.1661 -0.1752 39 1 -1.1765 -4.8310 -0.7733 40 1 2.2222 -5.6403 -0.1620 41 1 2.9504 -4.3888 -1.1994 42 1 0.9359 -3.9637 1.0559 43 1 2.6373 -3.4370 1.0238 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050737702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:47 Heat of formation + Delta-G solvation = 47.014432 kcal Electronic energy + Delta-G solvation = -26270.853871 eV Core-core repulsion = 22536.740816 eV Total energy + Delta-G solvation = -3734.113054 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.119 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.98219 -39.51833 -37.96795 -36.72480 -35.89531 -32.68713 -31.66025 -31.22466 -30.23647 -29.98082 -27.22496 -26.44427 -24.47466 -23.43186 -22.85470 -22.39108 -20.91834 -19.80428 -18.19265 -17.61507 -16.95543 -16.35832 -16.13896 -15.66074 -15.23489 -15.14658 -14.85109 -14.28929 -14.07649 -13.89892 -13.65126 -13.56993 -13.40268 -13.06222 -12.82481 -12.36045 -12.30847 -12.00153 -11.84501 -11.75027 -11.61278 -11.41349 -11.28793 -11.03855 -10.79466 -10.50874 -10.36929 -10.17946 -9.97113 -9.87310 -9.63444 -9.43052 -9.41455 -9.13621 -8.61774 -8.49749 -6.60155 -5.81494 -3.32267 0.45278 0.81868 1.73953 2.63750 2.78480 3.35196 3.42269 3.43424 3.50781 4.14986 4.39616 4.45951 4.48719 4.66802 4.72526 4.94362 5.00013 5.05237 5.18000 5.29463 5.38853 5.41545 5.46245 5.50679 5.56158 5.67404 5.82080 5.86730 5.91037 5.95670 6.02798 6.03921 6.23989 6.32501 6.38767 6.53980 6.56560 6.63227 6.78685 6.92433 7.29534 7.61124 7.70554 7.78006 8.11142 8.47257 9.19913 9.80832 10.40516 11.26392 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.022742 B = 0.002446 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.888288 B =11446.366700 C =11645.258369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.008 3.992 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.258 4.258 8 H 0.062 0.938 9 N -0.589 5.589 10 C 0.176 3.824 11 C -0.117 4.117 12 C -0.072 4.072 13 C 0.092 3.908 14 N -0.631 5.631 15 C 0.576 3.424 16 O -0.538 6.538 17 C -0.111 4.111 18 C -0.094 4.094 19 C -0.115 4.115 20 C -0.090 4.090 21 C -0.044 4.044 22 Cl -0.066 7.066 23 C -0.055 4.055 24 C 0.118 3.882 25 C -0.120 4.120 26 C 0.146 3.854 27 H 0.255 0.745 28 H 0.083 0.917 29 H 0.020 0.980 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.146 0.854 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.018 0.982 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.937 -18.753 -12.073 22.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.191 4.191 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.388 4.388 8 H 0.080 0.920 9 N -0.312 5.312 10 C 0.050 3.950 11 C -0.156 4.156 12 C -0.073 4.073 13 C -0.031 4.031 14 N -0.365 5.365 15 C 0.366 3.634 16 O -0.416 6.416 17 C -0.114 4.114 18 C -0.112 4.112 19 C -0.133 4.133 20 C -0.109 4.109 21 C -0.071 4.071 22 Cl -0.037 7.037 23 C -0.074 4.074 24 C -0.003 4.003 25 C -0.160 4.160 26 C 0.019 3.981 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.164 0.836 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.164 0.836 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.036 0.964 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.920 -18.705 -11.992 22.238 hybrid contribution 0.258 0.695 -0.209 0.771 sum 1.178 -18.009 -12.200 21.785 Atomic orbital electron populations 1.69989 1.05329 1.25643 1.53372 1.25240 0.95318 0.98546 1.00011 0.86304 0.79134 0.83662 0.77697 1.21392 1.21709 1.20362 1.19122 0.91087 0.84115 1.44490 0.91985 1.43939 1.37698 1.04009 1.45541 1.20705 0.89209 0.96737 0.88385 1.21976 1.00244 0.94064 0.99349 1.22013 0.95421 0.94507 0.95314 1.23667 0.80814 0.97554 1.01029 1.49878 1.08979 1.56468 1.21189 1.17770 0.83940 0.77955 0.83777 1.90791 1.21138 1.60231 1.69440 1.19920 0.93713 1.01781 0.96033 1.22049 0.96652 0.96211 0.96327 1.21122 0.99285 0.98343 0.94555 1.21269 0.90540 0.98811 1.00278 1.20808 0.89408 1.02486 0.94404 1.98382 1.47593 1.86837 1.70861 1.21170 1.00520 0.94160 0.91558 1.23342 0.98538 0.93272 0.85158 1.21973 0.96477 0.99524 0.97983 1.20898 0.97817 0.87071 0.92270 0.93532 0.89869 0.96212 0.91985 0.93093 0.89680 0.89456 0.83635 0.84335 0.84531 0.83604 0.89782 0.89433 0.92676 0.91590 0.96362 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.68 11.36 55.49 0.63 -25.05 16 2 C 0.01 0.23 4.98 -17.43 -0.09 0.14 16 3 Si 0.90 21.17 29.57 -169.99 -5.03 16.15 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.26 -6.79 9.52 -15.06 -0.14 -6.94 16 8 H 0.06 1.61 7.86 -52.49 -0.41 1.19 16 9 N -0.59 -13.87 2.93 -172.20 -0.50 -14.38 16 10 C 0.18 3.97 5.16 -3.66 -0.02 3.95 16 11 C -0.12 -2.06 5.22 -26.73 -0.14 -2.20 16 12 C -0.07 -1.03 0.77 -154.42 -0.12 -1.15 16 13 C 0.09 1.02 5.34 -3.16 -0.02 1.00 16 14 N -0.63 -8.86 3.43 -181.38 -0.62 -9.48 16 15 C 0.58 8.91 7.99 -12.33 -0.10 8.82 16 16 O -0.54 -10.28 17.10 5.31 0.09 -10.19 16 17 C -0.11 -1.38 5.87 -104.97 -0.62 -2.00 16 18 C -0.09 -0.90 9.09 -39.18 -0.36 -1.25 16 19 C -0.11 -0.88 10.03 -39.64 -0.40 -1.28 16 20 C -0.09 -0.73 9.82 -39.46 -0.39 -1.12 16 21 C -0.04 -0.45 6.31 -39.55 -0.25 -0.70 16 22 Cl -0.07 -0.62 28.95 -51.86 -1.50 -2.12 16 23 C -0.05 -0.65 9.37 -39.15 -0.37 -1.02 16 24 C 0.12 1.76 7.62 -3.15 -0.02 1.74 16 25 C -0.12 -1.74 5.26 -26.72 -0.14 -1.88 16 26 C 0.15 2.78 6.38 -3.65 -0.02 2.76 16 27 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 28 H 0.08 2.15 6.30 -51.93 -0.33 1.83 16 29 H 0.02 0.48 7.49 -51.93 -0.39 0.09 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.89 8.01 -51.93 -0.42 0.47 16 32 H 0.09 0.85 6.81 -51.93 -0.35 0.49 16 33 H 0.09 0.76 8.01 -51.93 -0.42 0.34 16 34 H 0.15 1.19 4.07 -52.49 -0.21 0.97 16 35 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 36 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.15 1.83 7.67 -52.49 -0.40 1.43 16 38 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 39 H 0.09 1.52 7.41 -51.93 -0.38 1.13 16 40 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.02 0.36 8.07 -51.93 -0.42 -0.06 16 43 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 LS Contribution 359.93 15.07 5.42 5.42 Total: -1.00 -31.09 359.93 -10.51 -41.59 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.81 Total: -0.83 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -3.19 Total: -1.12 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.50 Total: -48.91 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.15 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.09 -10.51 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050737702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.609 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds