Wall clock time and date at job start Tue Mar 31 2020 17:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99718 * 2 1 4 4 H 1.48501 * 109.47042 * 269.99953 * 3 2 1 5 5 H 1.48491 * 109.47226 * 30.00099 * 3 2 1 6 6 H 1.48501 * 109.46887 * 150.00283 * 3 2 1 7 7 C 1.38810 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99785 * 192.42548 * 7 2 1 9 9 N 1.36936 * 120.00002 * 12.42069 * 7 2 1 10 10 C 1.46885 * 120.46995 * 34.58612 * 9 7 2 11 11 C 1.53333 * 108.76012 * 124.43897 * 10 9 7 12 12 C 1.52672 * 109.11220 * 52.41232 * 11 10 9 13 13 C 1.53474 * 113.62474 * 170.86788 * 12 11 10 14 14 N 1.47670 * 85.98667 * 269.02460 * 13 12 11 15 15 C 1.34778 * 134.45466 * 155.67582 * 14 13 12 16 16 O 1.21560 * 119.99509 * 184.93503 * 15 14 13 17 17 C 1.47841 * 120.00321 * 4.93531 * 15 14 13 18 18 C 1.39601 * 120.13619 * 6.94625 * 17 15 14 19 19 C 1.37947 * 119.87416 * 179.97438 * 18 17 15 20 20 C 1.38357 * 120.16390 * 359.97438 * 19 18 17 21 21 C 1.38450 * 120.27952 * 0.02562 * 20 19 18 22 22 Cl 1.73601 * 119.93754 * 180.02562 * 21 20 19 23 23 C 1.38101 * 120.11589 * 359.78666 * 21 20 19 24 24 C 1.47658 * 91.08566 * 335.67975 * 14 13 12 25 25 C 1.52682 * 113.18105 * 302.40449 * 12 11 10 26 26 C 1.46897 * 120.46359 * 214.56296 * 9 7 2 27 27 H 0.97000 * 120.00568 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.58283 * 4.65672 * 10 9 7 29 29 H 1.08995 * 109.58457 * 244.22610 * 10 9 7 30 30 H 1.09003 * 109.53710 * 292.51957 * 11 10 9 31 31 H 1.08999 * 109.52745 * 172.29774 * 11 10 9 32 32 H 1.08998 * 113.79086 * 23.29365 * 13 12 11 33 33 H 1.08995 * 113.79576 * 154.75970 * 13 12 11 34 34 H 1.07993 * 120.06409 * 359.95550 * 18 17 15 35 35 H 1.08003 * 119.91221 * 180.02562 * 19 18 17 36 36 H 1.07996 * 119.85963 * 180.02562 * 20 19 18 37 37 H 1.08001 * 120.07443 * 180.23343 * 23 21 20 38 38 H 1.09002 * 113.79662 * 270.04871 * 24 14 13 39 39 H 1.09004 * 113.79360 * 138.58060 * 24 14 13 40 40 H 1.08996 * 109.53357 * 177.49487 * 25 12 11 41 41 H 1.09005 * 109.53037 * 297.71663 * 25 12 11 42 42 H 1.09003 * 109.58681 * 115.79167 * 26 9 7 43 43 H 1.08998 * 109.71474 * 355.41925 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0713 -1.2131 0.2007 9 7 1.3496 -2.3740 -0.2561 10 6 0.2321 -2.4066 -1.2088 11 6 0.5302 -3.4595 -2.2829 12 6 0.8736 -4.7830 -1.6037 13 6 0.9738 -5.9657 -2.5766 14 7 -0.4620 -6.1773 -2.3044 15 6 -1.4748 -6.7585 -2.9775 16 8 -2.6061 -6.7081 -2.5356 17 6 -1.2098 -7.4572 -4.2531 18 6 0.1026 -7.6432 -4.6909 19 6 0.3437 -8.2964 -5.8817 20 6 -0.7117 -8.7677 -6.6422 21 6 -2.0159 -8.5869 -6.2143 22 17 -3.3334 -9.1824 -7.1751 23 6 -2.2704 -7.9380 -5.0220 24 6 -0.3436 -5.4969 -0.9993 25 6 2.0573 -4.6773 -0.6451 26 6 1.7489 -3.6165 0.4182 27 1 -0.4851 0.8400 0.0004 28 1 0.1222 -1.4282 -1.6766 29 1 -0.6871 -2.6689 -0.6849 30 1 1.3740 -3.1319 -2.8902 31 1 -0.3467 -3.5919 -2.9166 32 1 1.1880 -5.6727 -3.6044 33 1 1.6125 -6.7744 -2.2215 34 1 0.9277 -7.2762 -4.0986 35 1 1.3589 -8.4410 -6.2208 36 1 -0.5173 -9.2788 -7.5735 37 1 -3.2879 -7.8006 -4.6870 38 1 -0.0964 -6.1661 -0.1752 39 1 -1.1765 -4.8310 -0.7733 40 1 2.2222 -5.6403 -0.1620 41 1 2.9504 -4.3888 -1.1994 42 1 0.9359 -3.9637 1.0559 43 1 2.6373 -3.4370 1.0238 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050737702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:46 Heat of formation + Delta-G solvation = 29.279950 kcal Electronic energy + Delta-G solvation = -26271.622895 eV Core-core repulsion = 22536.740816 eV Total energy + Delta-G solvation = -3734.882079 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.119 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.09124 -40.44604 -39.09236 -37.50912 -37.45739 -34.34238 -32.72267 -32.04260 -31.70824 -31.43306 -28.61949 -27.49634 -26.10313 -24.46940 -23.93230 -23.57051 -22.47878 -20.82544 -19.65287 -18.61624 -18.25740 -17.71168 -17.08563 -16.87456 -16.66235 -16.10481 -15.97907 -15.61940 -15.40871 -15.17857 -14.88555 -14.75667 -14.52269 -14.38149 -13.92612 -13.88018 -13.40133 -13.11556 -13.04771 -12.88571 -12.83111 -12.61086 -12.54269 -12.52443 -12.19698 -12.04681 -11.99234 -11.80312 -11.41518 -11.25727 -11.21673 -10.74349 -10.53408 -10.21301 -9.87226 -9.70656 -8.54732 -7.84613 -5.38460 -0.33546 0.09654 1.00499 1.47867 1.48473 1.57626 1.68392 1.73480 2.52268 2.66163 3.21743 3.27258 3.40509 3.70898 3.76609 3.89122 3.91405 3.99797 4.10313 4.21269 4.24789 4.30200 4.46956 4.48938 4.58492 4.66375 4.73731 4.76302 4.82730 4.86559 4.92349 5.07887 5.10380 5.13972 5.17437 5.22377 5.28966 5.33398 5.44195 5.55167 5.65464 5.68933 5.76169 6.45469 6.62112 6.97730 7.19197 7.89709 8.43407 9.20450 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.022742 B = 0.002446 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.888288 B =11446.366700 C =11645.258369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.050 4.050 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.264 1.264 7 C -0.259 4.259 8 H 0.069 0.931 9 N -0.607 5.607 10 C 0.185 3.815 11 C -0.101 4.101 12 C -0.073 4.073 13 C 0.110 3.890 14 N -0.632 5.632 15 C 0.568 3.432 16 O -0.594 6.594 17 C -0.133 4.133 18 C -0.087 4.087 19 C -0.101 4.101 20 C -0.080 4.080 21 C -0.053 4.053 22 Cl -0.067 7.067 23 C -0.074 4.074 24 C 0.112 3.888 25 C -0.103 4.103 26 C 0.137 3.863 27 H 0.248 0.752 28 H 0.042 0.958 29 H -0.014 1.014 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.107 0.893 33 H 0.133 0.867 34 H 0.166 0.834 35 H 0.181 0.819 36 H 0.166 0.834 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.046 0.954 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.009 0.991 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.955 -21.351 -13.969 26.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.246 4.246 3 Si 0.794 3.206 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.188 1.188 7 C -0.390 4.390 8 H 0.086 0.914 9 N -0.331 5.331 10 C 0.059 3.941 11 C -0.140 4.140 12 C -0.074 4.074 13 C -0.011 4.011 14 N -0.365 5.365 15 C 0.360 3.640 16 O -0.476 6.476 17 C -0.136 4.136 18 C -0.105 4.105 19 C -0.119 4.119 20 C -0.099 4.099 21 C -0.079 4.079 22 Cl -0.038 7.038 23 C -0.094 4.094 24 C -0.010 4.010 25 C -0.142 4.142 26 C 0.012 3.988 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.004 0.996 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.151 0.849 34 H 0.183 0.817 35 H 0.199 0.801 36 H 0.183 0.817 37 H 0.141 0.859 38 H 0.125 0.875 39 H 0.065 0.935 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.027 0.973 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.001 -21.333 -13.894 25.945 hybrid contribution -1.005 1.475 0.403 1.830 sum 3.996 -19.858 -13.490 24.337 Atomic orbital electron populations 1.70172 1.06947 1.25729 1.55578 1.26011 0.95977 1.01845 1.00766 0.85294 0.78217 0.79557 0.77542 1.21182 1.22675 1.18832 1.19500 0.91543 0.85257 1.42681 0.91364 1.44204 1.37438 1.04965 1.46466 1.20401 0.88133 0.96322 0.89251 1.21686 1.00234 0.94520 0.97603 1.21879 0.95211 0.93882 0.96456 1.23855 0.79255 0.96601 1.01367 1.49955 1.10317 1.55581 1.20643 1.18356 0.83361 0.77661 0.84666 1.90751 1.23378 1.62517 1.70991 1.19748 0.95427 1.03356 0.95093 1.22261 0.95359 0.95794 0.97135 1.21591 1.00995 0.96198 0.93096 1.21693 0.89494 0.97624 1.01095 1.20915 0.90502 1.02647 0.93878 1.98380 1.48014 1.86774 1.70601 1.21077 0.99709 0.95740 0.92890 1.23370 0.97452 0.93560 0.86667 1.21820 0.96311 0.99625 0.96442 1.21119 0.97341 0.86574 0.93742 0.94349 0.93994 0.99600 0.91229 0.93627 0.87521 0.84907 0.81698 0.80130 0.81685 0.85921 0.87457 0.93494 0.88413 0.90569 0.97284 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.31 11.36 21.65 0.25 -56.07 16 2 C -0.05 -2.80 4.98 84.86 0.42 -2.38 16 3 Si 0.97 44.37 29.57 68.60 2.03 46.40 16 4 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 7 C -0.26 -13.78 9.52 84.03 0.80 -12.98 16 8 H 0.07 3.48 7.86 -2.91 -0.02 3.46 16 9 N -0.61 -29.04 2.93 -698.73 -2.05 -31.08 16 10 C 0.18 8.80 5.16 86.42 0.45 9.24 16 11 C -0.10 -3.55 5.22 30.60 0.16 -3.39 16 12 C -0.07 -1.94 0.77 -52.03 -0.04 -1.98 16 13 C 0.11 1.92 5.34 86.31 0.46 2.38 16 14 N -0.63 -16.80 3.43 -846.04 -2.90 -19.70 16 15 C 0.57 17.73 7.99 86.79 0.69 18.42 16 16 O -0.59 -24.24 17.10 -3.90 -0.07 -24.31 16 17 C -0.13 -3.16 5.87 -20.09 -0.12 -3.28 16 18 C -0.09 -1.30 9.09 22.53 0.20 -1.10 16 19 C -0.10 -1.00 10.03 22.23 0.22 -0.78 16 20 C -0.08 -0.99 9.82 22.35 0.22 -0.77 16 21 C -0.05 -0.98 6.31 22.29 0.14 -0.84 16 22 Cl -0.07 -1.20 28.95 -2.72 -0.08 -1.28 16 23 C -0.07 -1.79 9.37 22.55 0.21 -1.58 16 24 C 0.11 3.26 7.62 86.32 0.66 3.92 16 25 C -0.10 -2.59 5.26 30.60 0.16 -2.43 16 26 C 0.14 5.09 6.38 86.42 0.55 5.64 16 27 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.04 2.31 6.30 -2.39 -0.02 2.29 16 29 H -0.01 -0.75 7.49 -2.39 -0.02 -0.76 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.05 1.62 8.01 -2.39 -0.02 1.60 16 32 H 0.11 1.50 6.81 -2.39 -0.02 1.48 16 33 H 0.13 1.29 8.01 -2.39 -0.02 1.28 16 34 H 0.17 1.70 4.07 -2.91 -0.01 1.68 16 35 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 36 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 37 H 0.12 3.41 7.67 -2.91 -0.02 3.38 16 38 H 0.11 2.63 8.07 -2.39 -0.02 2.61 16 39 H 0.05 1.74 7.41 -2.38 -0.02 1.73 16 40 H 0.10 1.73 8.12 -2.39 -0.02 1.71 16 41 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.01 0.35 8.07 -2.39 -0.02 0.33 16 43 H 0.06 2.08 7.93 -2.39 -0.02 2.06 16 Total: -1.00 -75.40 359.93 3.40 -72.00 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 1.03 Total: 5.93 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.19 Total: 8.11 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -4.70 Total: -106.85 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.07 Total: -24.31 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -75.40 3.40 -72.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050737702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.280 kcal (2) G-P(sol) polarization free energy of solvation -75.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds