Wall clock time and date at job start Tue Mar 31 2020 18:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42899 * 110.63787 * 300.42070 * 9 7 2 11 11 C 1.55153 * 110.72079 * 177.27948 * 9 7 2 12 12 C 1.54905 * 101.58432 * 206.13591 * 11 9 7 13 13 N 1.47419 * 104.83258 * 37.00633 * 12 11 9 14 14 C 1.34781 * 125.64850 * 155.91019 * 13 12 11 15 15 O 1.21586 * 120.00055 * 179.97438 * 14 13 12 16 16 N 1.34770 * 119.99924 * 359.97438 * 14 13 12 17 17 C 1.46499 * 120.00278 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47609 * 179.97438 * 17 16 14 19 19 C 1.37969 * 120.07388 * 259.72771 * 18 17 16 20 20 C 1.38343 * 120.15069 * 179.71988 * 19 18 17 21 21 C 1.38386 * 120.29998 * 0.55105 * 20 19 18 22 22 C 1.37929 * 120.15243 * 359.72771 * 21 20 19 23 23 C 1.39599 * 120.07968 * 79.99507 * 18 17 16 24 24 C 1.47729 * 120.14663 * 0.02843 * 23 18 17 25 25 O 1.21466 * 120.00488 * 0.02562 * 24 23 18 26 26 O 1.34721 * 119.99828 * 179.97438 * 24 23 18 27 27 C 1.47319 * 108.73704 * 335.71934 * 13 12 11 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 0.96699 * 114.00083 * 59.29892 * 10 9 7 30 30 H 1.09004 * 111.00253 * 324.20924 * 11 9 7 31 31 H 1.09005 * 111.00483 * 88.05560 * 11 9 7 32 32 H 1.08994 * 110.37244 * 155.84858 * 12 11 9 33 33 H 1.09008 * 110.36329 * 278.17306 * 12 11 9 34 34 H 0.97003 * 119.99949 * 359.97438 * 16 14 13 35 35 H 1.09010 * 109.46776 * 299.99751 * 17 16 14 36 36 H 1.09003 * 109.47328 * 59.99105 * 17 16 14 37 37 H 1.08004 * 119.92373 * 359.96984 * 19 18 17 38 38 H 1.07994 * 119.85073 * 180.27229 * 20 19 18 39 39 H 1.07999 * 119.92599 * 179.74549 * 21 20 19 40 40 H 1.07997 * 120.07662 * 180.02562 * 22 21 20 41 41 H 0.96698 * 116.99811 * 179.97438 * 26 24 23 42 42 H 1.09004 * 110.06766 * 241.86643 * 27 13 12 43 43 H 1.08999 * 109.85130 * 120.60999 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4077 -2.5991 1.1440 11 6 2.2320 -3.6993 -0.0725 12 6 1.3499 -4.7854 -0.7371 13 7 0.5316 -4.0559 -1.7227 14 6 -0.0315 -4.5894 -2.8250 15 8 -0.6896 -3.8900 -3.5707 16 7 0.1350 -5.8981 -3.1006 17 6 -0.4775 -6.4781 -4.2984 18 6 -0.1414 -7.9452 -4.3743 19 6 0.8686 -8.3809 -5.2072 20 6 1.1823 -9.7267 -5.2737 21 6 0.4790 -10.6459 -4.5152 22 6 -0.5369 -10.2247 -3.6827 23 6 -0.8549 -8.8671 -3.6063 24 6 -1.9419 -8.4086 -2.7172 25 8 -2.2170 -7.2272 -2.6535 26 8 -2.6289 -9.3009 -1.9778 27 6 0.4269 -2.6481 -1.3017 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2492 -1.8928 1.2125 30 1 3.0959 -3.4634 -0.6939 31 1 2.5432 -4.0059 0.9262 32 1 1.9731 -5.5273 -1.2362 33 1 0.7117 -5.2632 0.0064 34 1 0.6604 -6.4560 -2.5059 35 1 -1.5595 -6.3550 -4.2491 36 1 -0.0941 -5.9716 -5.1842 37 1 1.4182 -7.6693 -5.8055 38 1 1.9767 -10.0619 -5.9240 39 1 0.7262 -11.6955 -4.5750 40 1 -1.0847 -10.9431 -3.0910 41 1 -3.3309 -8.9534 -1.4108 42 1 -0.6150 -2.3914 -1.1102 43 1 0.8344 -1.9987 -2.0765 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:39 Heat of formation + Delta-G solvation = -128.661510 kcal Electronic energy + Delta-G solvation = -29013.008996 eV Core-core repulsion = 24830.568897 eV Total energy + Delta-G solvation = -4182.440099 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.88906 -39.47335 -38.93533 -37.31963 -36.32762 -34.48784 -34.16641 -32.14385 -31.76948 -31.54487 -29.81502 -27.79040 -26.54338 -24.90438 -24.28159 -22.61998 -22.30687 -21.06466 -19.62287 -19.37159 -18.31710 -17.77279 -17.34017 -17.00891 -16.13074 -15.92670 -15.69360 -15.50446 -15.10141 -14.85743 -14.72833 -14.31469 -13.97476 -13.68767 -13.37126 -13.22196 -12.89125 -12.85806 -12.72969 -12.51437 -12.11202 -11.97412 -11.69740 -11.61879 -11.46295 -11.31922 -11.02299 -10.75465 -10.59625 -10.43322 -10.40620 -10.10759 -9.62314 -9.44498 -9.28715 -9.21339 -8.62903 -8.62005 -8.24825 -7.64099 -6.23537 -4.31927 0.31736 0.86855 2.33088 2.76455 3.16217 3.24060 3.32244 3.35665 3.55197 3.91641 4.30495 4.33031 4.40591 4.56874 4.63283 4.71242 4.91438 5.04274 5.12291 5.32603 5.44842 5.49136 5.61379 5.75017 5.79060 5.85096 5.90784 5.99518 6.08675 6.16573 6.18273 6.36176 6.44650 6.57464 6.78359 6.87055 6.96044 7.08310 7.33994 7.39228 7.71297 7.75006 7.78926 8.08775 8.64644 8.73091 9.27639 9.35972 9.45994 10.84319 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.021056 B = 0.002785 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.478004 B =10051.836283 C =10362.494588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.069 3.931 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.247 3.753 10 O -0.586 6.586 11 C -0.115 4.115 12 C 0.105 3.895 13 N -0.631 5.631 14 C 0.722 3.278 15 O -0.596 6.596 16 N -0.736 5.736 17 C 0.171 3.829 18 C -0.039 4.039 19 C -0.113 4.113 20 C -0.085 4.085 21 C -0.131 4.131 22 C -0.064 4.064 23 C -0.112 4.112 24 C 0.512 3.488 25 O -0.479 6.479 26 O -0.518 6.518 27 C 0.124 3.876 28 H 0.270 0.730 29 H 0.384 0.616 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.389 0.611 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.139 0.861 41 H 0.416 0.584 42 H 0.062 0.938 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.550 -23.120 -7.641 24.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.134 4.134 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.395 6.395 11 C -0.153 4.153 12 C -0.018 4.018 13 N -0.369 5.369 14 C 0.424 3.576 15 O -0.475 6.475 16 N -0.393 5.393 17 C 0.047 3.953 18 C -0.040 4.040 19 C -0.131 4.131 20 C -0.103 4.103 21 C -0.149 4.149 22 C -0.082 4.082 23 C -0.114 4.114 24 C 0.355 3.645 25 O -0.366 6.366 26 O -0.330 6.330 27 C 0.002 3.998 28 H 0.080 0.920 29 H 0.235 0.765 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.222 0.778 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.157 0.843 41 H 0.275 0.725 42 H 0.080 0.920 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.445 -22.811 -8.389 24.309 hybrid contribution -0.197 1.235 0.503 1.348 sum 0.249 -21.576 -7.885 22.974 Atomic orbital electron populations 1.69666 1.05986 1.27781 1.49818 1.25086 0.95051 0.99770 0.93459 0.86348 0.80020 0.82795 0.77719 1.19624 1.20780 1.20786 1.21546 0.93666 0.90114 1.52131 0.91521 1.19505 0.86234 0.91991 0.81581 1.86082 1.51711 1.54886 1.46841 1.22717 0.97515 0.95097 1.00006 1.22186 0.93206 0.95236 0.91181 1.47977 1.53472 1.12653 1.22759 1.15391 0.79907 0.81259 0.81084 1.90870 1.45603 1.60506 1.50557 1.44816 1.57897 1.08708 1.27857 1.20177 1.00863 0.86208 0.88036 1.20145 0.93976 0.95521 0.94331 1.21157 0.96680 0.96303 0.98970 1.21473 0.98396 0.92981 0.97429 1.21218 0.96315 1.00282 0.97084 1.21479 0.95898 0.94290 0.96562 1.18982 0.97671 0.94420 1.00319 1.20925 0.81234 0.83706 0.78646 1.91032 1.65687 1.17394 1.62535 1.84503 1.49477 1.43342 1.55723 1.22893 1.01382 0.77076 0.98460 0.92041 0.76517 0.90574 0.90689 0.92874 0.92287 0.77787 0.88442 0.91341 0.84531 0.85052 0.85018 0.84308 0.72531 0.91996 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.40 10.96 55.43 0.61 -23.80 16 2 C 0.07 1.85 5.27 -17.82 -0.09 1.76 16 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -14.29 8.11 -34.44 -0.28 -14.57 16 8 H 0.07 1.74 7.77 -52.49 -0.41 1.34 16 9 C 0.25 6.16 0.85 -89.94 -0.08 6.09 16 10 O -0.59 -15.20 13.08 -35.23 -0.46 -15.66 16 11 C -0.12 -2.36 6.23 -24.59 -0.15 -2.51 16 12 C 0.11 1.96 6.57 -2.53 -0.02 1.94 16 13 N -0.63 -13.94 3.33 -176.00 -0.59 -14.52 16 14 C 0.72 15.80 8.49 -86.92 -0.74 15.07 16 15 O -0.60 -15.41 16.67 5.29 0.09 -15.33 16 16 N -0.74 -12.31 4.80 -66.41 -0.32 -12.63 16 17 C 0.17 2.49 4.82 -5.20 -0.03 2.46 16 18 C -0.04 -0.42 5.28 -104.21 -0.55 -0.97 16 19 C -0.11 -0.95 9.66 -39.64 -0.38 -1.33 16 20 C -0.08 -0.55 10.04 -39.49 -0.40 -0.95 16 21 C -0.13 -0.82 10.03 -39.64 -0.40 -1.22 16 22 C -0.06 -0.50 9.62 -39.17 -0.38 -0.88 16 23 C -0.11 -1.17 5.87 -104.99 -0.62 -1.79 16 24 C 0.51 6.06 8.24 34.61 0.29 6.34 16 25 O -0.48 -7.59 13.54 -19.24 -0.26 -7.85 16 26 O -0.52 -4.46 12.68 -40.55 -0.51 -4.97 16 27 C 0.12 3.16 5.39 -2.90 -0.02 3.15 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.38 10.24 7.24 45.56 0.33 10.57 16 30 H 0.08 1.49 8.03 -51.93 -0.42 1.08 16 31 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.05 0.80 7.30 -51.93 -0.38 0.42 16 33 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 34 H 0.39 5.72 6.94 -40.82 -0.28 5.44 16 35 H 0.10 1.65 5.92 -51.92 -0.31 1.34 16 36 H 0.07 0.97 8.00 -51.93 -0.42 0.56 16 37 H 0.14 0.99 8.03 -52.48 -0.42 0.57 16 38 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 39 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.14 0.88 7.61 -52.49 -0.40 0.48 16 41 H 0.42 2.10 9.11 45.56 0.42 2.52 16 42 H 0.06 1.74 8.00 -51.93 -0.42 1.32 16 43 H 0.06 1.74 7.81 -51.93 -0.41 1.34 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -34.55 362.89 -8.76 -43.32 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -3.93 Total: 17.59 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: -3.83 Total: 12.58 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.30 Total: -50.95 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -1.15 Total: -43.81 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.55 -8.76 -43.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.346 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds