Wall clock time and date at job start Tue Mar 31 2020 18:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99805 * 2 1 4 4 H 1.48508 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47095 * 299.99440 * 3 2 1 6 6 H 1.48496 * 109.47522 * 60.00035 * 3 2 1 7 7 C 1.37874 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00350 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00092 * 359.97438 * 7 2 1 10 10 O 1.42906 * 110.88434 * 62.42842 * 9 7 2 11 11 C 1.55154 * 111.03918 * 186.33240 * 9 7 2 12 12 C 1.54337 * 103.01952 * 153.40019 * 11 9 7 13 13 N 1.47021 * 107.26581 * 338.14082 * 12 11 9 14 14 C 1.34772 * 125.64960 * 178.85108 * 13 12 11 15 15 O 1.21589 * 120.00218 * 179.68778 * 14 13 12 16 16 N 1.34783 * 119.99911 * 359.69163 * 14 13 12 17 17 C 1.46499 * 119.99791 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.46914 * 179.97438 * 17 16 14 19 19 C 1.37957 * 120.07688 * 260.04722 * 18 17 16 20 20 C 1.38347 * 120.15001 * 179.97438 * 19 18 17 21 21 C 1.38386 * 120.30217 * 359.97438 * 20 19 18 22 22 C 1.37917 * 120.15331 * 359.97438 * 21 20 19 23 23 C 1.39612 * 120.07124 * 79.99971 * 18 17 16 24 24 C 1.47721 * 120.15273 * 0.30019 * 23 18 17 25 25 O 1.21469 * 119.99964 * 359.71887 * 24 23 18 26 26 O 1.34713 * 120.00125 * 179.72431 * 24 23 18 27 27 C 1.47423 * 108.70388 * 358.58682 * 13 12 11 28 28 H 0.96993 * 120.00115 * 0.02562 * 1 2 3 29 29 H 0.96701 * 113.99808 * 297.58012 * 10 9 7 30 30 H 1.09001 * 110.72040 * 271.95365 * 11 9 7 31 31 H 1.08995 * 110.72299 * 35.23087 * 11 9 7 32 32 H 1.08999 * 109.99071 * 218.66806 * 12 11 9 33 33 H 1.09003 * 109.77908 * 97.50031 * 12 11 9 34 34 H 0.96994 * 119.99875 * 359.97438 * 16 14 13 35 35 H 1.08993 * 109.47245 * 60.00273 * 17 16 14 36 36 H 1.09003 * 109.47247 * 299.99755 * 17 16 14 37 37 H 1.08005 * 119.92507 * 359.95071 * 19 18 17 38 38 H 1.08000 * 119.85086 * 179.97438 * 20 19 18 39 39 H 1.08004 * 119.92434 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.07857 * 180.02562 * 22 21 20 41 41 H 0.96698 * 117.00207 * 179.97438 * 26 24 23 42 42 H 1.08997 * 110.36962 * 143.19799 * 27 13 12 43 43 H 1.09000 * 110.36817 * 265.40992 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 8 0.4608 -2.6322 -1.1814 11 6 2.2192 -3.7010 0.1619 12 6 1.3292 -4.7798 0.8147 13 7 0.2064 -4.0859 1.4623 14 6 -0.8064 -4.6788 2.1248 15 8 -1.6823 -4.0021 2.6281 16 7 -0.8484 -6.0219 2.2296 17 6 -1.9490 -6.6663 2.9503 18 6 -1.7615 -8.1614 2.9208 19 6 -2.4684 -8.9292 2.0186 20 6 -2.2970 -10.3017 1.9899 21 6 -1.4162 -10.9138 2.8643 22 6 -0.7024 -10.1582 3.7708 23 6 -0.8713 -8.7723 3.8060 24 6 -0.1152 -7.9572 4.7786 25 8 -0.2635 -6.7519 4.8061 26 8 0.7388 -8.5504 5.6350 27 6 0.3754 -2.6337 1.2724 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2252 -1.9569 -1.2742 30 1 2.5837 -4.0347 -0.8097 31 1 3.0498 -3.4424 0.8185 32 1 1.9010 -5.3344 1.5587 33 1 0.9534 -5.4600 0.0503 34 1 -0.1498 -6.5617 1.8278 35 1 -2.8950 -6.4098 2.4735 36 1 -1.9578 -6.3211 3.9842 37 1 -3.1573 -8.4578 1.3333 38 1 -2.8531 -10.8982 1.2819 39 1 -1.2869 -11.9857 2.8364 40 1 -0.0151 -10.6371 4.4523 41 1 1.2112 -7.9757 6.2526 42 1 -0.5922 -2.1561 1.1186 43 1 0.8817 -2.1950 2.1322 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:43 Heat of formation + Delta-G solvation = -128.953750 kcal Electronic energy + Delta-G solvation = -29036.264493 eV Core-core repulsion = 24853.811721 eV Total energy + Delta-G solvation = -4182.452772 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.89178 -39.45988 -38.93361 -37.28918 -36.34002 -34.46215 -34.11643 -32.16922 -31.76214 -31.53108 -29.87321 -27.75069 -26.53531 -24.90953 -24.28884 -22.59915 -22.26611 -21.05727 -19.59104 -19.39237 -18.32660 -17.76711 -17.34207 -16.96451 -16.08468 -15.93200 -15.70513 -15.44351 -14.99575 -14.92332 -14.75586 -14.34928 -13.96312 -13.74625 -13.41216 -13.22908 -12.95253 -12.83877 -12.69304 -12.42039 -12.11509 -11.94425 -11.71613 -11.60409 -11.40871 -11.34297 -11.00712 -10.74997 -10.52575 -10.41900 -10.40579 -10.12041 -9.61319 -9.43560 -9.31882 -9.19390 -8.64795 -8.58711 -8.27529 -7.55797 -6.21647 -4.31281 0.32126 0.88155 2.32429 2.75237 3.18085 3.24319 3.32398 3.35742 3.57578 3.93912 4.30767 4.34208 4.41565 4.58169 4.67599 4.71788 4.92716 5.05472 5.12977 5.33591 5.48987 5.50268 5.62956 5.72835 5.77978 5.84764 5.91319 6.00802 6.08418 6.17523 6.20123 6.36070 6.44919 6.58181 6.77390 6.89706 6.97707 7.08559 7.32434 7.40868 7.70299 7.77452 7.80897 8.10441 8.66737 8.74913 9.30328 9.36436 9.44433 10.85380 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.021296 B = 0.002783 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.510858 B =10057.629717 C =10366.958184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.115 4.115 12 C 0.107 3.893 13 N -0.629 5.629 14 C 0.722 3.278 15 O -0.596 6.596 16 N -0.736 5.736 17 C 0.171 3.829 18 C -0.038 4.038 19 C -0.112 4.112 20 C -0.084 4.084 21 C -0.131 4.131 22 C -0.064 4.064 23 C -0.113 4.113 24 C 0.513 3.487 25 O -0.480 6.480 26 O -0.518 6.518 27 C 0.116 3.884 28 H 0.269 0.731 29 H 0.381 0.619 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.389 0.611 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.139 0.861 41 H 0.415 0.585 42 H 0.085 0.915 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.399 -23.181 6.562 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.153 4.153 12 C -0.017 4.017 13 N -0.366 5.366 14 C 0.425 3.575 15 O -0.475 6.475 16 N -0.392 5.392 17 C 0.047 3.953 18 C -0.039 4.039 19 C -0.131 4.131 20 C -0.102 4.102 21 C -0.149 4.149 22 C -0.083 4.083 23 C -0.115 4.115 24 C 0.356 3.644 25 O -0.368 6.368 26 O -0.330 6.330 27 C -0.006 4.006 28 H 0.079 0.921 29 H 0.230 0.770 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.222 0.778 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.157 0.843 41 H 0.274 0.726 42 H 0.103 0.897 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.135 -22.981 6.628 24.013 hybrid contribution 0.744 1.358 0.413 1.603 sum -1.392 -21.622 7.041 22.782 Atomic orbital electron populations 1.69735 1.05949 1.27718 1.49552 1.25085 0.95036 0.99725 0.93441 0.86362 0.80020 0.82858 0.77714 1.19634 1.20794 1.20809 1.21486 0.93618 0.90070 1.52309 0.91553 1.19640 0.86669 0.91490 0.81470 1.86096 1.51506 1.57126 1.44390 1.22580 0.97544 0.95259 0.99930 1.21885 0.88411 0.96004 0.95351 1.47874 1.23215 1.09603 1.55903 1.15390 0.81815 0.81128 0.79206 1.90871 1.39819 1.63140 1.53694 1.44805 1.28574 1.05260 1.60581 1.20178 0.90021 0.85244 0.99852 1.20153 0.93952 0.96375 0.93430 1.21169 0.99982 0.93763 0.98156 1.21481 0.96555 0.94668 0.97520 1.21214 0.97120 1.00456 0.96133 1.21471 0.97398 0.92118 0.97265 1.18978 1.00663 0.93532 0.98320 1.20928 0.77623 0.86292 0.79591 1.91026 1.61890 1.15099 1.68742 1.84508 1.54709 1.46077 1.47736 1.23086 1.02444 0.75785 0.99325 0.92098 0.76955 0.90867 0.90533 0.93478 0.92875 0.77830 0.91330 0.88461 0.84489 0.85033 0.85022 0.84336 0.72596 0.89710 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.35 10.69 55.43 0.59 -23.76 16 2 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.54 -14.25 8.27 -34.44 -0.28 -14.53 16 8 H 0.07 1.73 7.79 -52.49 -0.41 1.32 16 9 C 0.25 6.16 0.87 -89.62 -0.08 6.09 16 10 O -0.58 -15.14 13.16 -35.23 -0.46 -15.60 16 11 C -0.12 -2.36 6.13 -24.89 -0.15 -2.51 16 12 C 0.11 2.00 6.15 -3.06 -0.02 1.98 16 13 N -0.63 -13.96 3.33 -176.23 -0.59 -14.54 16 14 C 0.72 15.99 8.49 -86.92 -0.74 15.25 16 15 O -0.60 -15.54 16.60 5.29 0.09 -15.45 16 16 N -0.74 -12.50 4.81 -66.41 -0.32 -12.82 16 17 C 0.17 2.52 4.82 -5.19 -0.03 2.50 16 18 C -0.04 -0.42 5.28 -104.21 -0.55 -0.98 16 19 C -0.11 -0.98 9.66 -39.64 -0.38 -1.36 16 20 C -0.08 -0.56 10.04 -39.49 -0.40 -0.96 16 21 C -0.13 -0.84 10.03 -39.64 -0.40 -1.24 16 22 C -0.06 -0.50 9.62 -39.17 -0.38 -0.88 16 23 C -0.11 -1.18 5.87 -104.98 -0.62 -1.80 16 24 C 0.51 5.97 8.24 34.61 0.29 6.25 16 25 O -0.48 -7.46 13.55 -19.24 -0.26 -7.72 16 26 O -0.52 -4.32 12.68 -40.53 -0.51 -4.83 16 27 C 0.12 2.93 5.38 -2.53 -0.01 2.92 16 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.38 10.17 7.56 45.56 0.34 10.52 16 30 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.39 5.85 7.45 -40.82 -0.30 5.54 16 35 H 0.07 1.00 8.00 -51.93 -0.42 0.59 16 36 H 0.10 1.65 5.91 -51.93 -0.31 1.34 16 37 H 0.14 1.06 8.03 -52.48 -0.42 0.63 16 38 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.13 0.51 8.06 -52.48 -0.42 0.08 16 40 H 0.14 0.87 7.61 -52.49 -0.40 0.47 16 41 H 0.42 1.94 9.11 45.56 0.42 2.36 16 42 H 0.08 2.41 7.33 -51.93 -0.38 2.03 16 43 H 0.06 1.46 8.03 -51.93 -0.42 1.04 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -34.45 363.54 -8.81 -43.26 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -3.96 Total: 17.77 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: -3.84 Total: 12.51 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.31 Total: -51.13 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -1.15 Total: -43.61 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.45 -8.81 -43.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.698 kcal (2) G-P(sol) polarization free energy of solvation -34.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds