Wall clock time and date at job start Tue Mar 31 2020 17:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00087 * 2 1 4 4 H 1.48491 * 109.47165 * 270.00037 * 3 2 1 5 5 H 1.48501 * 109.47109 * 30.00285 * 3 2 1 6 6 H 1.48498 * 109.46766 * 149.99725 * 3 2 1 7 7 C 1.37880 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99665 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99996 * 180.02562 * 7 2 1 10 10 N 1.46903 * 109.46850 * 179.97438 * 9 7 2 11 11 C 1.46955 * 110.99782 * 170.00196 * 10 9 7 12 12 C 1.53046 * 109.36628 * 183.18747 * 11 10 9 13 13 N 1.46957 * 109.36197 * 301.59553 * 12 11 10 14 14 C 1.46903 * 110.99915 * 183.18416 * 13 12 11 15 15 C 1.50696 * 109.47011 * 169.99862 * 14 13 12 16 16 N 1.30930 * 126.39965 * 90.00517 * 15 14 13 17 17 C 1.35395 * 105.57939 * 179.97438 * 16 15 14 18 18 C 1.47728 * 126.44956 * 179.73369 * 17 16 15 19 19 C 1.34859 * 125.26804 * 179.72599 * 18 17 16 20 20 C 1.37831 * 114.72131 * 179.85739 * 19 18 17 21 21 C 1.33718 * 115.06695 * 0.42954 * 20 19 18 22 22 S 1.75860 * 109.75123 * 359.76848 * 21 20 19 23 23 N 1.31042 * 107.09717 * 0.02562 * 17 16 15 24 24 O 1.21287 * 110.04731 * 359.97438 * 23 17 16 25 25 C 1.46955 * 110.87812 * 59.32141 * 13 12 11 26 26 C 1.46957 * 110.99915 * 293.79638 * 10 9 7 27 27 H 0.97006 * 119.99779 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46984 * 59.99472 * 9 7 2 29 29 H 1.08997 * 109.46999 * 299.99492 * 9 7 2 30 30 H 1.09000 * 109.49184 * 63.21690 * 11 10 9 31 31 H 1.09004 * 109.48749 * 303.15571 * 11 10 9 32 32 H 1.09003 * 109.49251 * 181.63131 * 12 11 10 33 33 H 1.08999 * 109.48737 * 61.56413 * 12 11 10 34 34 H 1.09002 * 109.47018 * 50.00118 * 14 13 12 35 35 H 1.08995 * 109.47753 * 290.00514 * 14 13 12 36 36 H 1.07999 * 122.64144 * 0.02562 * 19 18 17 37 37 H 1.07998 * 122.46624 * 180.17314 * 20 19 18 38 38 H 1.08007 * 125.12087 * 179.73065 * 21 20 19 39 39 H 1.09000 * 109.49184 * 60.64661 * 25 13 12 40 40 H 1.09004 * 109.48749 * 180.70781 * 25 13 12 41 41 H 1.08999 * 109.49210 * 296.78153 * 26 10 9 42 42 H 1.08997 * 109.49032 * 56.82538 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5792 -0.0001 11 6 5.4506 -2.6253 -0.2377 12 6 5.9069 -4.0844 -0.3095 13 7 5.5600 -4.7657 0.9455 14 6 6.0495 -6.1508 0.9454 15 6 5.8970 -6.7375 2.3250 16 7 4.8535 -7.3812 2.7846 17 6 5.1662 -7.7187 4.0579 18 6 4.3071 -8.4566 5.0065 19 6 4.6453 -8.7851 6.2700 20 6 3.6749 -9.4730 6.9662 21 6 2.5524 -9.7172 6.2818 22 16 2.6876 -9.0492 4.6606 23 7 6.3719 -7.2621 4.2925 24 8 6.8018 -6.6984 3.3084 25 6 4.1105 -4.7196 1.1832 26 6 3.6542 -3.2605 1.2550 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6808 0.8905 29 1 3.8752 -0.6798 -0.8895 30 1 5.9691 -2.1219 0.5782 31 1 5.6809 -2.1255 -1.1786 32 1 6.9863 -4.1211 -0.4568 33 1 5.4088 -4.5806 -1.1424 34 1 7.1012 -6.1644 0.6591 35 1 5.4717 -6.7404 0.2338 36 1 5.6004 -8.5270 6.7032 37 1 3.8126 -9.7950 7.9878 38 1 1.6925 -10.2456 6.6665 39 1 3.5919 -5.2230 0.3673 40 1 3.8802 -5.2193 2.1241 41 1 4.1523 -2.7643 2.0879 42 1 2.5749 -3.2235 1.4026 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076176521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:59 Heat of formation + Delta-G solvation = 130.447893 kcal Electronic energy + Delta-G solvation = -25612.082536 eV Core-core repulsion = 21915.923886 eV Total energy + Delta-G solvation = -3696.158650 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -45.69864 -39.04319 -38.22569 -36.18221 -35.45773 -33.12759 -32.28092 -30.58785 -29.97585 -29.17100 -26.97285 -25.43174 -24.40560 -23.54396 -23.32618 -22.03609 -21.10471 -19.39010 -19.24625 -18.60613 -18.31347 -16.88096 -16.81647 -16.05302 -15.89720 -15.36283 -15.05309 -14.48024 -14.43725 -14.08270 -13.78740 -13.71521 -13.64810 -13.13516 -13.09133 -12.82092 -12.62014 -12.35085 -12.15384 -12.10351 -11.91194 -11.51719 -11.36352 -11.04784 -11.03374 -10.88606 -10.68425 -10.55985 -10.43969 -10.12747 -9.85817 -9.28705 -8.90672 -8.83159 -8.58242 -8.49011 -7.41910 -6.06254 -4.03875 0.16976 1.03324 1.12897 1.62656 1.94795 2.55912 2.63403 3.19078 3.27778 3.35472 3.37493 3.78548 3.97326 4.41106 4.60030 4.69191 4.71431 4.82201 5.01260 5.09512 5.16455 5.19680 5.25494 5.33447 5.40315 5.56049 5.64427 5.66262 5.68778 5.78946 5.88991 5.93154 6.00599 6.01519 6.22820 6.41282 6.59388 6.77584 6.84529 6.91517 7.05020 7.56942 7.86266 7.91936 8.00343 8.63727 9.01662 9.55312 11.06763 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.013913 B = 0.002658 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.079955 B =10532.511800 C =11895.327301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.080 0.920 9 C 0.163 3.837 10 N -0.529 5.529 11 C 0.053 3.947 12 C 0.064 3.936 13 N -0.538 5.538 14 C 0.142 3.858 15 C 0.209 3.791 16 N -0.472 5.472 17 C 0.238 3.762 18 C -0.132 4.132 19 C -0.093 4.093 20 C -0.140 4.140 21 C -0.211 4.211 22 S 0.194 5.806 23 N -0.370 5.370 24 O 0.092 5.908 25 C 0.055 3.945 26 C 0.068 3.932 27 H 0.264 0.736 28 H -0.011 1.011 29 H 0.025 0.975 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.172 0.828 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.029 0.971 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.378 -19.950 8.361 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.548 4.548 8 H 0.098 0.902 9 C 0.037 3.963 10 N -0.254 5.254 11 C -0.076 4.076 12 C -0.063 4.063 13 N -0.265 5.265 14 C 0.012 3.988 15 C -0.013 4.013 16 N -0.205 5.205 17 C -0.033 4.033 18 C -0.251 4.251 19 C -0.128 4.128 20 C -0.171 4.171 21 C -0.349 4.349 22 S 0.459 5.541 23 N -0.077 5.077 24 O 0.030 5.970 25 C -0.073 4.073 26 C -0.060 4.060 27 H 0.073 0.927 28 H 0.007 0.993 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.131 0.869 35 H 0.104 0.896 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.189 0.811 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.251 -20.044 7.810 24.276 hybrid contribution 1.323 1.050 1.238 2.095 sum 12.574 -18.993 9.048 24.510 Atomic orbital electron populations 1.69897 1.06126 1.26847 1.51005 1.24902 0.94739 0.98865 0.94820 0.86864 0.80326 0.84019 0.78573 1.20131 1.21218 1.19259 1.21022 0.88698 0.94714 1.50413 0.90164 1.20154 0.97101 0.83937 0.95148 1.62135 1.10248 1.19238 1.33760 1.22128 0.90353 0.94337 1.00816 1.22188 1.00033 0.95138 0.88931 1.62176 1.16310 1.11610 1.36371 1.20544 1.03779 0.90527 0.83911 1.28572 0.83389 0.94139 0.95161 1.72110 1.24845 1.16195 1.07395 1.22668 0.90439 0.99859 0.90319 1.21305 0.98899 1.08867 0.96065 1.20345 1.01391 0.98914 0.92162 1.20025 0.93057 1.02127 1.01854 1.26090 1.03281 1.07234 0.98245 1.84602 1.08340 1.50080 1.11119 1.75014 1.12787 1.12952 1.06902 1.85290 1.40710 1.54681 1.16288 1.22374 0.85251 0.98557 1.01125 1.22016 1.02008 0.91283 0.90722 0.92656 0.99294 0.95707 0.94870 0.90498 0.90340 0.93288 0.86870 0.89593 0.83599 0.83555 0.81090 0.93211 0.90836 0.95321 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 21.41 27.47 -169.99 -4.67 16.75 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.51 -14.37 9.03 -34.44 -0.31 -14.68 16 8 H 0.08 2.46 7.37 -52.49 -0.39 2.07 16 9 C 0.16 3.90 3.79 -4.98 -0.02 3.89 16 10 N -0.53 -10.80 4.70 -235.92 -1.11 -11.91 16 11 C 0.05 0.85 5.61 -3.77 -0.02 0.83 16 12 C 0.06 0.80 5.61 -3.77 -0.02 0.78 16 13 N -0.54 -7.05 4.70 -235.92 -1.11 -8.16 16 14 C 0.14 1.41 5.59 -4.98 -0.03 1.38 16 15 C 0.21 2.56 7.12 -12.98 -0.09 2.47 16 16 N -0.47 -6.53 10.79 -9.88 -0.11 -6.63 16 17 C 0.24 3.30 8.02 -156.04 -1.25 2.04 16 18 C -0.13 -1.60 6.44 -36.90 -0.24 -1.84 16 19 C -0.09 -0.95 10.05 -40.93 -0.41 -1.36 16 20 C -0.14 -1.13 10.16 -41.32 -0.42 -1.55 16 21 C -0.21 -1.64 11.23 29.15 0.33 -1.32 16 22 S 0.19 1.98 23.32 -107.50 -2.51 -0.53 16 23 N -0.37 -5.17 12.16 30.99 0.38 -4.80 16 24 O 0.09 1.19 11.29 18.00 0.20 1.39 16 25 C 0.05 0.86 5.44 -3.77 -0.02 0.84 16 26 C 0.07 1.32 5.43 -3.77 -0.02 1.30 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H -0.01 -0.26 7.18 -51.93 -0.37 -0.63 16 29 H 0.02 0.59 7.45 -51.93 -0.39 0.20 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 32 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 0.77 8.03 -51.93 -0.42 0.35 16 35 H 0.09 0.78 8.12 -51.93 -0.42 0.36 16 36 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 37 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.17 0.85 8.06 -52.48 -0.42 0.43 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.18 6.59 -51.93 -0.34 0.83 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 2.05 6.79 -51.93 -0.35 1.70 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -32.54 360.83 -10.98 -43.51 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -5.64 Total: -3.02 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -2.62 Total: -5.34 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -1.17 Total: -58.20 kcal Atomic # 8 Polarization: 1.19 SS G_CDS: 0.20 Total: 1.39 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.51 Total: -0.53 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.54 -10.98 -43.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076176521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.961 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds