Wall clock time and date at job start Tue Mar 31 2020 18:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34224 * 125.77162 * 2 1 4 4 N 1.39127 * 107.11418 * 180.02562 * 3 2 1 5 5 C 1.36228 * 139.29458 * 180.37077 * 4 3 2 6 6 C 1.33013 * 116.10852 * 180.11178 * 5 4 3 7 7 C 1.46874 * 125.22741 * 179.78549 * 6 5 4 8 8 O 1.21667 * 119.99661 * 359.71985 * 7 6 5 9 9 N 1.34773 * 120.00113 * 179.72458 * 7 6 5 10 10 C 1.47025 * 125.64537 * 359.96716 * 9 7 6 11 11 C 1.54330 * 107.26887 * 178.97796 * 10 9 7 12 12 C 1.55155 * 102.94325 * 337.81091 * 11 10 9 13 13 H 1.09004 * 111.00411 * 277.38931 * 12 11 10 14 14 N 1.46490 * 111.00570 * 153.57545 * 12 11 10 15 15 C 1.46503 * 120.00147 * 303.18067 * 14 12 11 16 16 C 1.36940 * 120.00078 * 123.45356 * 14 12 11 17 17 H 1.07991 * 119.99916 * 23.21333 * 16 14 12 18 18 C 1.38815 * 119.99824 * 203.21330 * 16 14 12 19 19 N 1.31616 * 120.00450 * 14.40335 * 18 16 14 20 20 Si 1.86802 * 119.99672 * 194.40326 * 18 16 14 21 21 H 1.48498 * 109.47136 * 90.00164 * 20 18 16 22 22 H 1.48499 * 109.46967 * 210.00009 * 20 18 16 23 23 H 1.48499 * 109.47335 * 329.99721 * 20 18 16 24 24 C 1.47469 * 125.63269 * 179.97438 * 9 7 6 25 25 S 1.75800 * 109.54574 * 359.51894 * 6 5 4 26 26 C 1.35441 * 106.45666 * 359.97438 * 4 3 2 27 27 N 1.32276 * 108.78084 * 0.02562 * 26 4 3 28 28 H 1.09003 * 109.47352 * 269.98551 * 1 2 3 29 29 H 1.08997 * 109.46868 * 29.98303 * 1 2 3 30 30 H 1.09000 * 109.47235 * 149.98502 * 1 2 3 31 31 H 1.08002 * 126.44167 * 0.03354 * 3 2 1 32 32 H 1.08007 * 121.94949 * 359.92072 * 5 4 3 33 33 H 1.09005 * 109.88265 * 59.56588 * 10 9 7 34 34 H 1.08999 * 110.01715 * 298.46988 * 10 9 7 35 35 H 1.09004 * 110.71906 * 219.44592 * 11 10 9 36 36 H 1.08998 * 110.86681 * 96.24468 * 11 10 9 37 37 H 1.09000 * 109.47145 * 95.18538 * 15 14 12 38 38 H 1.08995 * 109.47326 * 215.18446 * 15 14 12 39 39 H 1.09002 * 109.46606 * 335.18452 * 15 14 12 40 40 H 0.96995 * 120.00366 * 179.97438 * 19 18 16 41 41 H 1.08994 * 110.34884 * 85.24550 * 24 9 7 42 42 H 1.09005 * 110.39707 * 322.90814 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2916 1.0890 0.0000 4 7 3.6097 0.6440 -0.0006 5 6 4.8724 1.1553 0.0048 6 6 5.8633 0.2680 -0.0015 7 6 7.2948 0.5967 -0.0019 8 8 7.6519 1.7597 -0.0013 9 7 8.2128 -0.3901 -0.0030 10 6 7.9216 -1.8312 -0.0032 11 6 9.2751 -2.5721 -0.0310 12 6 10.2416 -1.5085 -0.6158 13 1 10.1858 -1.4863 -1.7041 14 7 11.6161 -1.7453 -0.1680 15 6 11.9213 -1.7979 1.2640 16 6 12.6168 -1.9120 -1.0878 17 1 12.5047 -1.5144 -2.0856 18 6 13.7751 -2.5922 -0.7377 19 7 13.8069 -3.3156 0.3614 20 14 15.2889 -2.4807 -1.8265 21 1 16.1274 -1.3344 -1.3926 22 1 16.0724 -3.7372 -1.7151 23 1 14.8704 -2.2818 -3.2373 24 6 9.6755 -0.2028 -0.0041 25 16 5.1963 -1.3585 -0.0016 26 6 3.5577 -0.7095 -0.0003 27 7 2.2900 -1.0869 -0.0002 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3634 -0.8898 -0.5141 31 1 1.9617 2.1174 0.0005 32 1 5.0581 2.2193 0.0107 33 1 7.3384 -2.0915 -0.8867 34 1 7.3699 -2.1006 0.8974 35 1 9.2235 -3.4454 -0.6813 36 1 9.5810 -2.8596 0.9749 37 1 11.9127 -2.8349 1.5995 38 1 12.9065 -1.3667 1.4415 39 1 11.1717 -1.2310 1.8162 40 1 14.6161 -3.7911 0.6058 41 1 10.0415 -0.0710 1.0141 42 1 9.9483 0.6541 -0.6201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971678708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:26 Heat of formation + Delta-G solvation = 99.145689 kcal Electronic energy + Delta-G solvation = -25745.273723 eV Core-core repulsion = 22047.757707 eV Total energy + Delta-G solvation = -3697.516016 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.98079 -40.09658 -37.86494 -36.69189 -34.97701 -32.09184 -31.54364 -31.10230 -29.96217 -28.51557 -27.09900 -26.14139 -25.04130 -23.68860 -22.52140 -21.62986 -21.13378 -19.47944 -18.85225 -18.78452 -17.18270 -16.97674 -16.56876 -16.18805 -16.02743 -15.66233 -14.88364 -14.70724 -14.23333 -13.82453 -13.64158 -13.59273 -13.55766 -13.32210 -12.83684 -12.67193 -12.64906 -12.56552 -12.15622 -11.87202 -11.70060 -11.20563 -11.04122 -10.85192 -10.80955 -10.61601 -10.56158 -10.46971 -10.32508 -10.25799 -9.97417 -9.92100 -9.09908 -8.69659 -8.60478 -7.95247 -6.89623 -5.83859 -3.31863 0.20310 0.58520 1.24212 1.70694 2.05183 2.48882 2.91004 2.93247 3.33570 3.40764 3.41300 4.00292 4.25787 4.34785 4.39867 4.68052 4.81377 4.87399 4.96227 5.09382 5.19189 5.30272 5.33416 5.35210 5.46237 5.51371 5.59048 5.70729 5.76787 5.85593 6.09396 6.16980 6.22242 6.30932 6.44678 6.50267 6.67723 6.74983 7.24256 7.38304 7.40505 7.61203 7.71827 7.92487 8.27427 9.10558 9.72578 10.20649 11.20745 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.035277 B = 0.002343 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.530131 B =11948.191510 C =12304.252665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.048 3.952 3 C -0.059 4.059 4 N -0.405 5.405 5 C 0.124 3.876 6 C -0.243 4.243 7 C 0.609 3.391 8 O -0.530 6.530 9 N -0.601 5.601 10 C 0.083 3.917 11 C -0.143 4.143 12 C 0.174 3.826 13 H 0.082 0.918 14 N -0.583 5.583 15 C 0.156 3.844 16 C -0.264 4.264 17 H 0.071 0.929 18 C 0.007 3.993 19 N -0.902 5.902 20 Si 0.907 3.093 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.086 3.914 25 S 0.236 5.764 26 C 0.128 3.872 27 N -0.458 5.458 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.185 0.815 32 H 0.194 0.806 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.042 0.958 39 H 0.004 0.996 40 H 0.254 0.746 41 H 0.076 0.924 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.470 6.092 0.652 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.082 4.082 3 C -0.190 4.190 4 N -0.083 5.083 5 C -0.011 4.011 6 C -0.366 4.366 7 C 0.395 3.605 8 O -0.408 6.408 9 N -0.333 5.333 10 C -0.042 4.042 11 C -0.184 4.184 12 C 0.063 3.937 13 H 0.100 0.900 14 N -0.303 5.303 15 C 0.011 3.989 16 C -0.393 4.393 17 H 0.089 0.911 18 C -0.193 4.193 19 N -0.546 5.546 20 Si 0.737 3.263 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.037 4.037 25 S 0.489 5.511 26 C -0.237 4.237 27 N -0.182 5.182 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.202 0.798 32 H 0.211 0.789 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.022 0.978 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.889 4.598 0.730 22.379 hybrid contribution 0.428 2.130 -0.416 2.212 sum -21.462 6.728 0.314 22.494 Atomic orbital electron populations 1.20130 0.86289 1.03359 1.02923 1.20878 0.96907 0.87659 1.02770 1.22608 0.78695 1.01162 1.16547 1.43645 1.05699 1.08086 1.50887 1.20504 0.80128 1.01542 0.98924 1.23524 0.98255 0.97366 1.17442 1.16078 0.81980 0.84724 0.77712 1.90854 1.80267 1.18198 1.51504 1.48268 1.07973 1.06072 1.70993 1.22257 1.00005 0.80429 1.01540 1.23231 0.91905 0.99609 1.03664 1.21423 0.85261 0.89611 0.97454 0.90008 1.43807 1.01022 1.82561 1.02900 1.20856 0.96750 0.98841 0.82412 1.19210 0.95258 1.30116 0.94698 0.91143 1.25033 0.99537 0.96863 0.97825 1.70059 1.27437 1.31603 1.25507 0.86223 0.82997 0.77067 0.80039 1.21380 1.21713 1.20380 1.23148 0.76029 1.01907 1.02628 1.85423 0.84599 1.00753 1.80371 1.27337 1.01763 0.84446 1.10166 1.70532 0.96584 1.29437 1.21643 0.90640 0.90657 0.90502 0.79804 0.78902 0.90843 0.90978 0.89904 0.90030 0.94630 0.93888 0.97798 0.93568 0.90601 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.41 36.00 0.37 -0.08 16 2 C 0.05 0.50 7.05 -83.08 -0.59 -0.08 16 3 C -0.06 -0.57 11.92 -15.65 -0.19 -0.76 16 4 N -0.41 -4.66 3.14 -63.51 -0.20 -4.86 16 5 C 0.12 1.37 10.94 -17.41 -0.19 1.18 16 6 C -0.24 -3.00 6.27 -37.90 -0.24 -3.23 16 7 C 0.61 9.08 7.82 -12.77 -0.10 8.98 16 8 O -0.53 -9.31 17.01 5.22 0.09 -9.22 16 9 N -0.60 -8.91 3.33 -171.95 -0.57 -9.48 16 10 C 0.08 1.06 5.17 -3.06 -0.02 1.04 16 11 C -0.14 -2.20 6.53 -24.89 -0.16 -2.37 16 12 C 0.17 3.19 3.54 -65.79 -0.23 2.96 16 13 H 0.08 1.52 7.95 -51.93 -0.41 1.10 16 14 N -0.58 -13.41 2.95 -171.04 -0.51 -13.91 16 15 C 0.16 3.53 7.74 59.85 0.46 3.99 16 16 C -0.26 -6.80 9.60 -15.06 -0.14 -6.94 16 17 H 0.07 1.78 7.86 -52.49 -0.41 1.37 16 18 C 0.01 0.18 5.07 -17.43 -0.09 0.09 16 19 N -0.90 -25.01 10.82 55.49 0.60 -24.41 16 20 Si 0.91 21.03 29.58 -169.99 -5.03 16.01 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 C 0.09 1.46 6.45 -2.51 -0.02 1.45 16 25 S 0.24 2.67 18.66 -107.50 -2.01 0.66 16 26 C 0.13 1.65 8.92 -88.51 -0.79 0.86 16 27 N -0.46 -6.19 11.32 -9.73 -0.11 -6.30 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.18 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.19 1.75 7.97 -52.48 -0.42 1.33 16 33 H 0.07 0.83 6.82 -51.93 -0.35 0.48 16 34 H 0.07 0.82 6.97 -51.93 -0.36 0.46 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.34 7.21 -51.93 -0.37 0.96 16 37 H 0.04 0.87 7.34 -51.93 -0.38 0.49 16 38 H 0.04 1.07 7.40 -51.93 -0.38 0.68 16 39 H 0.00 0.07 6.15 -51.93 -0.32 -0.25 16 40 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.08 1.34 6.14 -51.93 -0.32 1.02 16 42 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 LS Contribution 354.35 15.07 5.34 5.34 Total: -1.00 -31.42 354.35 -9.71 -41.12 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -5.40 Total: -2.03 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -1.91 Total: 7.09 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.79 Total: -58.96 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.01 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -2.01 Total: 0.66 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.42 -9.71 -41.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971678708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.268 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds